jgi.p|Nanoce1779_2|669156, mRNA_2578 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669156
Unique Name	mRNA_2578
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3400
Alignment location	scaffold_5:693897..697296 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669242
Track	FilteredModels2
ProteinId	669156

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:693897..697296 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669156	gene_2578	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669156	mRNA_2578-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2578	CDS_2578	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:693897..697296+
coding sequence from alignment at scaffold_5:693897..697296+

mRNA sequence

>mRNA_2578 ID=mRNA_2578|Name=jgi.p|Nanoce1779_2|669156|organism=Nannochloropsis oceanica|type=mRNA|length=3400bp
CCCTTGCCACTTGCCGCCAATGTCCAAAGAGCCAATTGCGCAGGCGCATT
TCTTCGGGATAGAAGTCTCGCGTGCCCCGGGGAGGTTGGAGGTCGAGCTT
GGCCTTCTGTGGTTGGCTTGTGCCTTTCTTGTCGGCTCTGCGGTGGGTTG
AGATTTGGTTAAAAGGAGTCAGTAAGACGCACGCATTTTCGTTTCCCCTC
CTGCCATCCTCAAGACGCACCTCTTATTAGAGTCCTGTTTGACAGCAGCA
CTAGCGCGTCCGCCATCTGCGGCATCTGACGCCATAAGGGTCTGGTGCCC
AAGGCTTCTGACCCTGACGAGGCTAGCGGAGGAGGGGAGACGGCGTGACA
AAAGGGGGACTTCGGACACCGAGGCTCTTCTGCCCGCCGCCGCGCCATAA
CACCTCCAGGCTAGGCATGTTGCGGCCTTCATGAAAATAGCGCAGGCCGC
AGCCAAGAAGATGGTGACAAGGACGCTCTGGCTACTGCTGCTAGAGGCAC
CACGCACGCGTTTGGTCATGGGAAGCAGAAAGGAGATGAGGGGCTTGTGG
ACAGGTTGCACCACACAAAAGGCGCCCAACCCGACAAAAAGACACCTGTG
CGCAAGCCGAAAGAACGTGTTTGTGAGAGTGTAAGCCTGACTTCTCATTA
AAAGTGAGTAAACATAAAAATACACAATTGAATCCTGCTGGAAAAACATT
CCCACTTCCTCCATCCCTCCCTTCCACCAACCAAGATGCACACATCCACA
TCATCGCAGGAACACGGCATGCCAGCGGGCGGTGTGAGGGTCTCGGTTGC
GGTCCCTCTGCTCGCATGCTCCTGCCTCATTTTTTGCAGTACAATGGCGC
GGCCCTCAGCCTTCCTTCTAAGCCTCCCGTCTCGTTCACACCGCCCCCTC
CTTGCTCGTCTTTTCGCCTCGTCAGTGCCAAACAAATCAGAACGGCTGAG
GTTAAATATAGCAATTGTTGGTGGCGGTTTGTCTGGCCTGTCGACAGCTT
GGCATCTGGCAGGCCGTGTTCAACGCCTTACCATCTATGACAGCATGGCA
CCAGGGCAGGCCTCGGCCTCGGCCGTTGCGGGCGGCTTACTCCACCCACT
CACGCCCAAGAACCGCATAATTTGGTCAGGACTGGAAGGATTCGAAGCCA
CTCTCCGCCTCGTGGAGGCAAGCAAGGCAGCGCTCTTGAATGCAGGAGAT
GAAGCTGCCGCCCGTCGGCTGCACTCATCACCGGGCACCATTCTTCGTCC
AGCATTGATTCCACAACACGTCCTCAACTACCAGGCAGCCGCCGCCAAGC
TCCCGGAATGGCTAAAATGGCTGGAGGGAGAGGAATGGCAATGTAAAGCC
AACAATCCGGGGCATGGATTGCTGTTGCGGAATAGTATTGTGTTGTCCAT
GCCTGACTACTTGCGAGGCCTCTGGCTGTCACTTCAACAAACACACGGCA
ACACCACCATGTTGACATGGGAACAGTGCACCTTTTCCAATGCTCAGGCT
ATCAAACATAAAAAAAAAAATGCAGGAGCTGCAGCGTACGATGTAATCGT
CCTAGCCTCAGGGGCCGGCATCTGCTCTTTCCCCGCACTGAAGCATCTAC
CCATTGAGCTGGTCACAGGACGCACTTTACTGGTGGATCAAGAGGAAGAA
GATAAGGAAGGGAGGGAAGAGAGCGCGGCGGGGACCTCATTGGGCTCAGC
ATTGCTCTGCGGCGAATATGTAGTGCCGGGGGTGGACTTGAGGAGGGGCG
AAGACTGGACGAAGGCAGAGAGGAGAGTGCTGAGGTGTGGTTCGACAAAG
GAATACGTGAAAGATCCTTGGGGACAAGTGGCCAAAGTGAAAGGCGGGGA
GGAGAAAGAGGAAAAGGGCGAGGAGAAGATGAGGGCTTTGCGAGAGAAAG
CGGAGAGGATCTACCCTCCTTTGAAAAGGAGACCTGCCGCGTACCGTATC
ACGACTGGTACTCGCGTAGCCACGCCAAGAAGTGATCTTGGCAGGGTTCC
TATACTCGGTCGTGTTTCTTTGAGAGGAAAGGAGGGAGGAAAGGAGGAAG
GGGAGGAGGTGGAGACGTGGTTGTACACCGGGTTGGGTGGGAGGGGCTTG
ATTCATCATGCCTTTCTGGGGGCAAAACTGGCAGAGGCTATCTTGATGGG
GGATGAGACATTACTGCCCTTCCAGGTACGGGCACCCCTTGTCAAGCAGA
GGGAAAAAAGATTTTGGTGAAGGTATGAGTGGTCGTAGGAAAATCATGAG
AGAAATACAGAATCTTAACCGTGGTAGGAGTGCAAGGCATTGGCACTGTA
AGTAATGCATGTCAGTTCATCGTAAAATAGAAAAAAGAAAAGCACACAAA
CGCACACTGCAAGAGGGGAAATCCTTTTTATCCTTCTCAAAGCCACTCTA
TGTGTCGTTTTCTCCGTGCTTTTCTAAATCTCTTCCTACTGCAAAATTCT
TCCAGTCCCACATACATATACATGTATACACACACATATATATATACATA
TATACATATATATGTGTTATTAATATCAATTTAGGCGGCGGTTAACCAGC
CAATTCTCATATTGTTCCATCACTCTCTCCATACAACATCGGCCACTCTC
CTCTCCACTCTCTTCCCTCGCTCTGGCCTTCCTACCATGACGCAATTTGA
CTACAGGCAGAGTTAATTTCCTCTAGCTGCCCGCTATTGTTCATGTCAGT
GTGCTTTTGAGCATATGTCAGTATACCTTGGCACGCCCTTTCCCCCTCTC
TACCTACCTACATAGCTTGTCCGACCTTGTTCTTGCAGGAGAGTCTCCAC
TGTGAGTTTAGGAAAGCGAAGGGGGAAATGGAAAGAGGGAGGGAGGAGTT
GTGAGATGTGATGCAAAAAGTGTCAAGCACGATAAGAACATGTAATTCAG
AGCACGAGAAACGAAATTTGAGCCGCGCGCATCATCTCCCCTCCCTTTAA
AGACAGAGCAAGCTTACTTGATGAGAAAAAGGTTTCAAAATCATCGTCCA
ACACACGAAAATCTCCCAAATCAAGTAAGTCTCCACTTTCGTCCCTCCGT
TGCAGCTTCCCATCAATGATGTAATGTGGGATCCCGTCATAGTAGACCTG
GACACATGCACACTCTTTTGTTGCATGTTCTCCTGCGCACTTCTTTTGTG
CCTCCCCTACTTCTTTTTCGGTCAGTTTCCCCTTTTCGGAGGTGGAGGGG
GAGGGAGGCAAGTCGGGGAGAGGGGGGGGAAGGGCAGCGACAGGAGGCGG
CGGAGGAGAAGGAGGGTCGTCGTGTTTGTGGCCTTCTCGACATTCGAGGA
CACGGTCGGGCGAGAGGAAGTCGACATGCTGCCCGTGAAGCACGCGTGTA
AACAGTTTCGGTTGCCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGC

protein sequence of jgi.p|Nanoce1779_2|669156

>mRNA_2578-protein ID=mRNA_2578-protein|Name=jgi.p|Nanoce1779_2|669156|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MHTSTSSQEHGMPAGGVRVSVAVPLLACSCLIFCSTMARPSAFLLSLPSR
SHRPLLARLFASSVPNKSERLRLNIAIVGGGLSGLSTAWHLAGRVQRLTI
YDSMAPGQASASAVAGGLLHPLTPKNRIIWSGLEGFEATLRLVEASKAAL
LNAGDEAAARRLHSSPGTILRPALIPQHVLNYQAAAAKLPEWLKWLEGEE
WQCKANNPGHGLLLRNSIVLSMPDYLRGLWLSLQQTHGNTTMLTWEQCTF
SNAQAIKHKKKNAGAAAYDVIVLASGAGICSFPALKHLPIELVTGRTLLV
DQEEEDKEGREESAAGTSLGSALLCGEYVVPGVDLRRGEDWTKAERRVLR
CGSTKEYVKDPWGQVAKVKGGEEKEEKGEEKMRALREKAERIYPPLKRRP
AAYRITTGTRVATPRSDLGRVPILGRVSLRGKEGGKEEGEEVETWLYTGL
GGRGLIHHAFLGAKLAEAILMGDETLLPFQVRAPLVKQREKRFW*

mRNA from alignment at scaffold_5:693897..697296+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2578 ID=mRNA_2578|Name=jgi.p|Nanoce1779_2|669156|organism=Nannochloropsis oceanica|type=mRNA|length=3400bp|location=Sequence derived from alignment at scaffold_5:693897..697296+ (Nannochloropsis oceanica)
CCCTTGCCACTTGCCGCCAATGTCCAAAGAGCCAATTGCGCAGGCGCATT
TCTTCGGGATAGAAGTCTCGCGTGCCCCGGGGAGGTTGGAGGTCGAGCTT
GGCCTTCTGTGGTTGGCTTGTGCCTTTCTTGTCGGCTCTGCGGTGGGTTG
AGATTTGGTTAAAAGGAGTCAGTAAGACGCACGCATTTTCGTTTCCCCTC
CTGCCATCCTCAAGACGCACCTCTTATTAGAGTCCTGTTTGACAGCAGCA
CTAGCGCGTCCGCCATCTGCGGCATCTGACGCCATAAGGGTCTGGTGCCC
AAGGCTTCTGACCCTGACGAGGCTAGCGGAGGAGGGGAGACGGCGTGACA
AAAGGGGGACTTCGGACACCGAGGCTCTTCTGCCCGCCGCCGCGCCATAA
CACCTCCAGGCTAGGCATGTTGCGGCCTTCATGAAAATAGCGCAGGCCGC
AGCCAAGAAGATGGTGACAAGGACGCTCTGGCTACTGCTGCTAGAGGCAC
CACGCACGCGTTTGGTCATGGGAAGCAGAAAGGAGATGAGGGGCTTGTGG
ACAGGTTGCACCACACAAAAGGCGCCCAACCCGACAAAAAGACACCTGTG
CGCAAGCCGAAAGAACGTGTTTGTGAGAGTGTAAGCCTGACTTCTCATTA
AAAGTGAGTAAACATAAAAATACACAATTGAATCCTGCTGGAAAAACATT
CCCACTTCCTCCATCCCTCCCTTCCACCAACCAAGATGCACACATCCACA
TCATCGCAGGAACACGGCATGCCAGCGGGCGGTGTGAGGGTCTCGGTTGC
GGTCCCTCTGCTCGCATGCTCCTGCCTCATTTTTTGCAGTACAATGGCGC
GGCCCTCAGCCTTCCTTCTAAGCCTCCCGTCTCGTTCACACCGCCCCCTC
CTTGCTCGTCTTTTCGCCTCGTCAGTGCCAAACAAATCAGAACGGCTGAG
GTTAAATATAGCAATTGTTGGTGGCGGTTTGTCTGGCCTGTCGACAGCTT
GGCATCTGGCAGGCCGTGTTCAACGCCTTACCATCTATGACAGCATGGCA
CCAGGGCAGGCCTCGGCCTCGGCCGTTGCGGGCGGCTTACTCCACCCACT
CACGCCCAAGAACCGCATAATTTGGTCAGGACTGGAAGGATTCGAAGCCA
CTCTCCGCCTCGTGGAGGCAAGCAAGGCAGCGCTCTTGAATGCAGGAGAT
GAAGCTGCCGCCCGTCGGCTGCACTCATCACCGGGCACCATTCTTCGTCC
AGCATTGATTCCACAACACGTCCTCAACTACCAGGCAGCCGCCGCCAAGC
TCCCGGAATGGCTAAAATGGCTGGAGGGAGAGGAATGGCAATGTAAAGCC
AACAATCCGGGGCATGGATTGCTGTTGCGGAATAGTATTGTGTTGTCCAT
GCCTGACTACTTGCGAGGCCTCTGGCTGTCACTTCAACAAACACACGGCA
ACACCACCATGTTGACATGGGAACAGTGCACCTTTTCCAATGCTCAGGCT
ATCAAACATAAAAAAAAAAATGCAGGAGCTGCAGCGTACGATGTAATCGT
CCTAGCCTCAGGGGCCGGCATCTGCTCTTTCCCCGCACTGAAGCATCTAC
CCATTGAGCTGGTCACAGGACGCACTTTACTGGTGGATCAAGAGGAAGAA
GATAAGGAAGGGAGGGAAGAGAGCGCGGCGGGGACCTCATTGGGCTCAGC
ATTGCTCTGCGGCGAATATGTAGTGCCGGGGGTGGACTTGAGGAGGGGCG
AAGACTGGACGAAGGCAGAGAGGAGAGTGCTGAGGTGTGGTTCGACAAAG
GAATACGTGAAAGATCCTTGGGGACAAGTGGCCAAAGTGAAAGGCGGGGA
GGAGAAAGAGGAAAAGGGCGAGGAGAAGATGAGGGCTTTGCGAGAGAAAG
CGGAGAGGATCTACCCTCCTTTGAAAAGGAGACCTGCCGCGTACCGTATC
ACGACTGGTACTCGCGTAGCCACGCCAAGAAGTGATCTTGGCAGGGTTCC
TATACTCGGTCGTGTTTCTTTGAGAGGAAAGGAGGGAGGAAAGGAGGAAG
GGGAGGAGGTGGAGACGTGGTTGTACACCGGGTTGGGTGGGAGGGGCTTG
ATTCATCATGCCTTTCTGGGGGCAAAACTGGCAGAGGCTATCTTGATGGG
GGATGAGACATTACTGCCCTTCCAGGTACGGGCACCCCTTGTCAAGCAGA
GGGAAAAAAGATTTTGGTGAAGGTATGAGTGGTCGTAGGAAAATCATGAG
AGAAATACAGAATCTTAACCGTGGTAGGAGTGCAAGGCATTGGCACTGTA
AGTAATGCATGTCAGTTCATCGTAAAATAGAAAAAAGAAAAGCACACAAA
CGCACACTGCAAGAGGGGAAATCCTTTTTATCCTTCTCAAAGCCACTCTA
TGTGTCGTTTTCTCCGTGCTTTTCTAAATCTCTTCCTACTGCAAAATTCT
TCCAGTCCCACATACATATACATGTATACACACACATATATATATACATA
TATACATATATATGTGTTATTAATATCAATTTAGGCGGCGGTTAACCAGC
CAATTCTCATATTGTTCCATCACTCTCTCCATACAACATCGGCCACTCTC
CTCTCCACTCTCTTCCCTCGCTCTGGCCTTCCTACCATGACGCAATTTGA
CTACAGGCAGAGTTAATTTCCTCTAGCTGCCCGCTATTGTTCATGTCAGT
GTGCTTTTGAGCATATGTCAGTATACCTTGGCACGCCCTTTCCCCCTCTC
TACCTACCTACATAGCTTGTCCGACCTTGTTCTTGCAGGAGAGTCTCCAC
TGTGAGTTTAGGAAAGCGAAGGGGGAAATGGAAAGAGGGAGGGAGGAGTT
GTGAGATGTGATGCAAAAAGTGTCAAGCACGATAAGAACATGTAATTCAG
AGCACGAGAAACGAAATTTGAGCCGCGCGCATCATCTCCCCTCCCTTTAA
AGACAGAGCAAGCTTACTTGATGAGAAAAAGGTTTCAAAATCATCGTCCA
ACACACGAAAATCTCCCAAATCAAGTAAGTCTCCACTTTCGTCCCTCCGT
TGCAGCTTCCCATCAATGATGTAATGTGGGATCCCGTCATAGTAGACCTG
GACACATGCACACTCTTTTGTTGCATGTTCTCCTGCGCACTTCTTTTGTG
CCTCCCCTACTTCTTTTTCGGTCAGTTTCCCCTTTTCGGAGGTGGAGGGG
GAGGGAGGCAAGTCGGGGAGAGGGGGGGGAAGGGCAGCGACAGGAGGCGG
CGGAGGAGAAGGAGGGTCGTCGTGTTTGTGGCCTTCTCGACATTCGAGGA
CACGGTCGGGCGAGAGGAAGTCGACATGCTGCCCGTGAAGCACGCGTGTA
AACAGTTTCGGTTGCCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGC

Coding sequence (CDS) from alignment at scaffold_5:693897..697296+

>mRNA_2578 ID=mRNA_2578|Name=jgi.p|Nanoce1779_2|669156|organism=Nannochloropsis oceanica|type=CDS|length=1485bp|location=Sequence derived from alignment at scaffold_5:693897..697296+ (Nannochloropsis oceanica)
ATGCACACATCCACATCATCGCAGGAACACGGCATGCCAGCGGGCGGTGT
GAGGGTCTCGGTTGCGGTCCCTCTGCTCGCATGCTCCTGCCTCATTTTTT
GCAGTACAATGGCGCGGCCCTCAGCCTTCCTTCTAAGCCTCCCGTCTCGT
TCACACCGCCCCCTCCTTGCTCGTCTTTTCGCCTCGTCAGTGCCAAACAA
ATCAGAACGGCTGAGGTTAAATATAGCAATTGTTGGTGGCGGTTTGTCTG
GCCTGTCGACAGCTTGGCATCTGGCAGGCCGTGTTCAACGCCTTACCATC
TATGACAGCATGGCACCAGGGCAGGCCTCGGCCTCGGCCGTTGCGGGCGG
CTTACTCCACCCACTCACGCCCAAGAACCGCATAATTTGGTCAGGACTGG
AAGGATTCGAAGCCACTCTCCGCCTCGTGGAGGCAAGCAAGGCAGCGCTC
TTGAATGCAGGAGATGAAGCTGCCGCCCGTCGGCTGCACTCATCACCGGG
CACCATTCTTCGTCCAGCATTGATTCCACAACACGTCCTCAACTACCAGG
CAGCCGCCGCCAAGCTCCCGGAATGGCTAAAATGGCTGGAGGGAGAGGAA
TGGCAATGTAAAGCCAACAATCCGGGGCATGGATTGCTGTTGCGGAATAG
TATTGTGTTGTCCATGCCTGACTACTTGCGAGGCCTCTGGCTGTCACTTC
AACAAACACACGGCAACACCACCATGTTGACATGGGAACAGTGCACCTTT
TCCAATGCTCAGGCTATCAAACATAAAAAAAAAAATGCAGGAGCTGCAGC
GTACGATGTAATCGTCCTAGCCTCAGGGGCCGGCATCTGCTCTTTCCCCG
CACTGAAGCATCTACCCATTGAGCTGGTCACAGGACGCACTTTACTGGTG
GATCAAGAGGAAGAAGATAAGGAAGGGAGGGAAGAGAGCGCGGCGGGGAC
CTCATTGGGCTCAGCATTGCTCTGCGGCGAATATGTAGTGCCGGGGGTGG
ACTTGAGGAGGGGCGAAGACTGGACGAAGGCAGAGAGGAGAGTGCTGAGG
TGTGGTTCGACAAAGGAATACGTGAAAGATCCTTGGGGACAAGTGGCCAA
AGTGAAAGGCGGGGAGGAGAAAGAGGAAAAGGGCGAGGAGAAGATGAGGG
CTTTGCGAGAGAAAGCGGAGAGGATCTACCCTCCTTTGAAAAGGAGACCT
GCCGCGTACCGTATCACGACTGGTACTCGCGTAGCCACGCCAAGAAGTGA
TCTTGGCAGGGTTCCTATACTCGGTCGTGTTTCTTTGAGAGGAAAGGAGG
GAGGAAAGGAGGAAGGGGAGGAGGTGGAGACGTGGTTGTACACCGGGTTG
GGTGGGAGGGGCTTGATTCATCATGCCTTTCTGGGGGCAAAACTGGCAGA
GGCTATCTTGATGGGGGATGAGACATTACTGCCCTTCCAGGTACGGGCAC
CCCTTGTCAAGCAGAGGGAAAAAAGATTTTGGTGA

Synonyms

Publications