jgi.p|Nanoce1779_2|580816, mRNA_2577 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580816
Unique Name	mRNA_2577
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	822
Alignment location	scaffold_5:693896..694717 -

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Properties


Property Name	Value
TranscriptId	580902
Track	FilteredModels2
ProteinId	580816

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:693896..694717 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580816	gene_2577	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580816	mRNA_2577-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2577	CDS_2577	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:693896..694717-
coding sequence from alignment at scaffold_5:693896..694717-

mRNA sequence

>mRNA_2577 ID=mRNA_2577|Name=jgi.p|Nanoce1779_2|580816|organism=Nannochloropsis oceanica|type=mRNA|length=822bp
GAGCATGCGAGCAGAGGGACCGCAACCGAGACCCTCACACCGCCCGCTGG
CATGCCGTGTTCCTGCGATGATGTGGATGTGTGCATCTTGGTTGGTGGAA
GGGAGGGATGGAGGAAGTGGGAATGTTTTTCCAGCAGGATTCAATTGTGT
ATTTTTATGTTTACTCACTTTTAATGAGAAGTCAGGCTTACACTCTCACA
AACACGTTCTTTCGGCTTGCGCACAGGTGTCTTTTTGTCGGGTTGGGCGC
CTTTTGTGTGGTGCAACCTGTCCACAAGCCCCTCATCTCCTTTCTGCTTC
CCATGACCAAACGCGTGCGTGGTGCCTCTAGCAGCAGTAGCCAGAGCGTC
CTTGTCACCATCTTCTTGGCTGCGGCCTGCGCTATTTTCATGAAGGCCGC
AACATGCCTAGCCTGGAGGTGTTATGGCGCGGCGGCGGGCAGAAGAGCCT
CGGTGTCCGAAGTCCCCCTTTTGTCACGCCGTCTCCCCTCCTCCGCTAGC
CTCGTCAGGGTCAGAAGCCTTGGGCACCAGACCCTTATGGCGTCAGATGC
CGCAGATGGCGGACGCGCTAGTGCTGCTGTCAAACAGGACTCTAATAAGA
GGTGCGTCTTGAGGATGGCAGGAGGGGAAACGAAAATGCGTGCGTCTTAC
TGACTCCTTTTAACCAAATCTCAACCCACCGCAGAGCCGACAAGAAAGGC
ACAAGCCAACCACAGAAGGCCAAGCTCGACCTCCAACCTCCCCGGGGCAC
GCGAGACTTCTATCCCGAAGAAATGCGCCTGCGCAATTGGCTCTTTGGAC
ATTGGCGGCAAGTGGCAAGGGA

protein sequence of jgi.p|Nanoce1779_2|580816

>mRNA_2577-protein ID=mRNA_2577-protein|Name=jgi.p|Nanoce1779_2|580816|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MEEVGMFFQQDSIVYFYVYSLLMRSQAYTLTNTFFRLAHRCLFVGLGAFC
VVQPVHKPLISFLLPMTKRVRGASSSSSQSVLVTIFLAAACAIFMKAATC
LAWRCYGAAAGRRASVSEVPLLSRRLPSSASLVRVRSLGHQTLMASDAAD
GGRASAAVKQDSNKRCVLRMAGGETKMRASY*

mRNA from alignment at scaffold_5:693896..694717-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2577 ID=mRNA_2577|Name=jgi.p|Nanoce1779_2|580816|organism=Nannochloropsis oceanica|type=mRNA|length=822bp|location=Sequence derived from alignment at scaffold_5:693896..694717- (Nannochloropsis oceanica)
GAGCATGCGAGCAGAGGGACCGCAACCGAGACCCTCACACCGCCCGCTGG
CATGCCGTGTTCCTGCGATGATGTGGATGTGTGCATCTTGGTTGGTGGAA
GGGAGGGATGGAGGAAGTGGGAATGTTTTTCCAGCAGGATTCAATTGTGT
ATTTTTATGTTTACTCACTTTTAATGAGAAGTCAGGCTTACACTCTCACA
AACACGTTCTTTCGGCTTGCGCACAGGTGTCTTTTTGTCGGGTTGGGCGC
CTTTTGTGTGGTGCAACCTGTCCACAAGCCCCTCATCTCCTTTCTGCTTC
CCATGACCAAACGCGTGCGTGGTGCCTCTAGCAGCAGTAGCCAGAGCGTC
CTTGTCACCATCTTCTTGGCTGCGGCCTGCGCTATTTTCATGAAGGCCGC
AACATGCCTAGCCTGGAGGTGTTATGGCGCGGCGGCGGGCAGAAGAGCCT
CGGTGTCCGAAGTCCCCCTTTTGTCACGCCGTCTCCCCTCCTCCGCTAGC
CTCGTCAGGGTCAGAAGCCTTGGGCACCAGACCCTTATGGCGTCAGATGC
CGCAGATGGCGGACGCGCTAGTGCTGCTGTCAAACAGGACTCTAATAAGA
GGTGCGTCTTGAGGATGGCAGGAGGGGAAACGAAAATGCGTGCGTCTTAC
TGACTCCTTTTAACCAAATCTCAACCCACCGCAGAGCCGACAAGAAAGGC
ACAAGCCAACCACAGAAGGCCAAGCTCGACCTCCAACCTCCCCGGGGCAC
GCGAGACTTCTATCCCGAAGAAATGCGCCTGCGCAATTGGCTCTTTGGAC
ATTGGCGGCAAGTGGCAAGGGA

Coding sequence (CDS) from alignment at scaffold_5:693896..694717-

>mRNA_2577 ID=mRNA_2577|Name=jgi.p|Nanoce1779_2|580816|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_5:693896..694717- (Nannochloropsis oceanica)
ATGGAGGAAGTGGGAATGTTTTTCCAGCAGGATTCAATTGTGTATTTTTA
TGTTTACTCACTTTTAATGAGAAGTCAGGCTTACACTCTCACAAACACGT
TCTTTCGGCTTGCGCACAGGTGTCTTTTTGTCGGGTTGGGCGCCTTTTGT
GTGGTGCAACCTGTCCACAAGCCCCTCATCTCCTTTCTGCTTCCCATGAC
CAAACGCGTGCGTGGTGCCTCTAGCAGCAGTAGCCAGAGCGTCCTTGTCA
CCATCTTCTTGGCTGCGGCCTGCGCTATTTTCATGAAGGCCGCAACATGC
CTAGCCTGGAGGTGTTATGGCGCGGCGGCGGGCAGAAGAGCCTCGGTGTC
CGAAGTCCCCCTTTTGTCACGCCGTCTCCCCTCCTCCGCTAGCCTCGTCA
GGGTCAGAAGCCTTGGGCACCAGACCCTTATGGCGTCAGATGCCGCAGAT
GGCGGACGCGCTAGTGCTGCTGTCAAACAGGACTCTAATAAGAGGTGCGT
CTTGAGGATGGCAGGAGGGGAAACGAAAATGCGTGCGTCTTACTGA

Synonyms

Publications