jgi.p|Nanoce1779_2|580808, mRNA_2574 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580808
Unique Name	mRNA_2574
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2639
Alignment location	scaffold_5:684174..687767 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580894
Track	FilteredModels2
ProteinId	580808

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:684174..687767 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580808	gene_2574	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580808	mRNA_2574-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2574	CDS_2574	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:684174..687767+
coding sequence from alignment at scaffold_5:684174..687767+

mRNA sequence

>mRNA_2574 ID=mRNA_2574|Name=jgi.p|Nanoce1779_2|580808|organism=Nannochloropsis oceanica|type=mRNA|length=2639bp
CAGCAGATGCAAGAACACGACGCAATATCGGTCGATTCCGGCAAAATCCA
TGATGACGACAGCCGCAGGCTTATCCCTCCCAAACTTCTTGTCTCCACAA
TGCTGTCATCAGCCGGTACCAGCACTTATTCCAAGGTAGCAGCGACAGCA
GCTGACAGCAGCGCGCCGAGCTCTGTGGACCAATTGATGCACAGTCGATC
TTTTATTTCCCACTCAGGGGTTCCAATGTTCGTGGATGGGATAGGTGAGT
GCCAGCTCAAAGTCAAGCTCCCTTTCAATGCAATACACGTCTCAATCATG
TCAGGGCTTGCGTCATTCCATCCTCCCGGATCTCGCACTGCGCCGACTTA
CTATCAATCCTTATCGCCCGAGCTCGTAGACGAAATCAACGGCATCCTTC
CTTGCCCAAATCTCCCCGTGCATTTTTATCGATCCACCCGCCATCTTCAC
AATTCCGTTCTGTCTCCCCCCAGACGACATTGAGAAGATGGAAAAGCTCG
CCGACTTGGATGCTAACAATTCTTGCCTCACGATCCCCGCGACACGTTTT
CCGGACGCGGCCGTGCCGTTCAATGACGGTCCTAACGTGGGCCGCTTCCG
TGTCACGAAGCGTGCGGCCTTAAGAATCGTACCTGTCCCTGCAGAAGGGG
AGACACCACGCGCCATAGAGAGCCGTGACAAGGTCAAGCTTGTGGTGGTC
TTGCTGGGGTGGTTGGGCTGCCAAGACAGGCATTTGAAAAAATATGCGGA
GATGTATCATGAGAGTATGAACTGCGAGGTGGTGTTGCGGCACACGGTCC
CCGCGAGCAGGCTGCTGCGTCGGAAGCAATGGGGAGCCGTCCGAGCTGCC
GAGGAGATAATGACATTGATCCCTCTCTTTTTCCCCGATGCCAAAGTGGT
CGTGCATTATTTTTCAAATGGTGGCTGTTTTGTACATCGTAGAATGCTGT
TACTGCAGAACGGGCATTATCGCCAGGGAGATGCAAGGCGGTTCTGCTGT
GATCCTGAACCACCCACGGACGACTACCAGTTCCCTCAGCTTGCAGGCAC
AATTTTTGATAGCTGCCCTGTCGCCGCGGATGCCGAGGCTGGGGCCAGGG
CCGTAAGCGCACGTGTGCAGTCGCCGATTATCCGCTTGCTCATGTACGCG
ACTATTCGCTTCGGGCTTGAGATTTACGGGATCGCACAATCATGGCGTTA
TGAGCAGAAATATATCGAGCACATTGAAAATGATCATACCCTCGTTCCCA
GCCTCTATATCTTTTCGGAAGACGACACCATTACTGACCCTGCTTTGGTT
GAAAGAGTGGTGGCCAAGCGGAAGGCCTACCTTACCTCTCAAGGTTTGCC
CGCTGATGTCATGCTCGAGACATGGAAGATCACAGATCCTTCACTTCATG
TTTGTCATTACGCGCGTTATCCGATAGAGTACCAAAAAAAAATAAAAGAT
TTTCTGCAGAGACAAGGCCTAATCCCTTGAAGAGCGTAGATGAAGGATTC
AGAATGCTGCCAATAGTTCAGCAGTGAATGCCTTGCCCTCCAATTGTAGA
CAAAGTAAATCACATTCGGTGCCTTTTTTAATTAAAGCGGCGATTGAAGC
GCTCGATCGAGTGAACGTCTTCGATAAGCAAGCTTGATGGATCGAAGAAA
ATTGGTTCATGCCCGTCGTTCCTTTCTTTCACCACTCTCGTTTCATGTAA
AGCTTTATTCGAAGCGCTTGGGGAGACTTGCCAACGATTACCCAGGGGTA
CTGAATCCTTCCCCATCTCTTTATTTTATTTTCCCTTCGATCCTACTCTT
CTTCGACTTTGTCTCTCAAAAAGTATTCTCTCTCCTCCCTAGTATTTAGC
ATAAAATCCCAACCCATGTCGCTGTTTGGTTCCCTTAATCGTTTTGAAGT
TCCAAATCATGCCTGATATAATCACACACAGACGGCTGCTGATCTCTTTT
CTCAACATACACTCCAAGCCTTACTGCCGTCTGTTATTCTCATTTGTCTC
TCGACATACAACTTTGAAAAAAATGTGATCCTGATTTCTTACGGTACAAG
ATGAAAATATTTTTCTCCTTACTTTAAGCTCCTCCTTCTATTCCACTTAT
CCACGAGCATCTCAATATCATGCTCTACTACATATCGCCTCTGTTCCCCA
TTTAAATTAATCATTCAATCACGCTTCGCAGACAGGCATGGTCGAAGGGT
CGCATTGCACTCCAGCGAGCTGCGCTGAATTATACTCGATACCATTGCAG
ACACCTCCGGCTTCTGCCTCCAAGCAACAAATAGGATTCTTAAGGAGACC
ACTAGTGTCACACTTCGCCCGACAGTTGGCCAGGGTGTAGGCCTCATTTG
AGCGGGTTTCCCTAGGATATTGGCAGTACCACGCACCCGCGATCGGTGCC
ACTGGCTTTTTGGTGGGCACCCTCGGAGGCACTGAAGTGGGGGCTGGAGT
GTTAGCGCCCCTCGAGCAATCGACCGGGCGTATCGCAGGGTCGCATTTCA
ATCCACTGGCCACGGCTGCAGCCTGTTCCTCCTCATTGCACACGTTTCCT
GCTGTGGCAGGGTCACAGCAGACGGGGTTCAATCGGACCCCGCTATCATC
ACACTTTACGTTGCAATTGGAGATGGTGCTTGCGTCGTT

protein sequence of jgi.p|Nanoce1779_2|580808

>mRNA_2574-protein ID=mRNA_2574-protein|Name=jgi.p|Nanoce1779_2|580808|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MEKLADLDANNSCLTIPATRFPDAAVPFNDGPNVGRFRVTKRAALRIVPV
PAEGETPRAIESRDKVKLVVVLLGWLGCQDRHLKKYAEMYHESMNCEVVL
RHTVPASRLLRRKQWGAVRAAEEIMTLIPLFFPDAKVVVHYFSNGGCFVH
RRMLLLQNGHYRQGDARRFCCDPEPPTDDYQFPQLAGTIFDSCPVAADAE
AGARAVSARVQSPIIRLLMYATIRFGLEIYGIAQSWRYEQKYIEHIENDH
TLVPSLYIFSEDDTITDPALVERVVAKRKAYLTSQGLPADVMLETWKITD
PSLHVCHYARYPIEYQKKIKDFLQRQGLIP*

mRNA from alignment at scaffold_5:684174..687767+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2574 ID=mRNA_2574|Name=jgi.p|Nanoce1779_2|580808|organism=Nannochloropsis oceanica|type=mRNA|length=3594bp|location=Sequence derived from alignment at scaffold_5:684174..687767+ (Nannochloropsis oceanica)
CAGCAGATGCAAGAACACGACGCAATATCGGTCGATTCCGGCAAAATCCA
TGATGACGACAGCCGCAGGCTTATCCCTCCCAAACTTCTTGTCTCCACAA
TGCTGTCATCAGCCGGTACCAGCACTTATTCCAAGGTAGCAGCGACAGCA
GCTGACAGCAGCGCGCCGAGCTCTGTGGACCAATTGATGCACAGTCGATC
TTTTATTTCCCACTCAGGGGTTCCAATGTTCGTGGATGGGATAGGTGAGT
GCCAGCTCAAAGTCAAGCTCCCTTTCAATGCAATACACGTCTCAATCATG
TCAGGGCTTGCGTCATTCCATCCTCCCGGATCTCGCACTGCGCCGACTTA
CTATCAATCCTTATCGCCCGAGCTCGTAGACGAAATCAACGGCATCCTTC
CTTGCCCAAATCTCCCCGTGCATTTTTATCGATCCACCCGCCATCTTCAC
AATTCCGTTCTGTCTCCCCCCAGACGACATTGAGAAGATGGAAAAGCTCG
CCGACTTGGATGCTAACAATTCTTGCCTCACGATCCCCGCGACACGTTTT
CCGGACGCGGCCGTGCCGTTCAATGACGGTCCTAACGTGGGCCGCTTCCG
TGTCACGAAGCGTGCGGCCTTAAGAATCGTACCTGTCCCTGCAGAAGGGG
AGACACCACGCGCCATAGAGAGCCGTGACAAGGTCAAGCTTGTGGTGGTC
TTGCTGGGGTGGTTGGGCTGCCAAGACAGGCATTTGAAAAAATATGCGGA
GATGTATCATGAGAGTATGAACTGCGAGGTGGTGTTGCGGCACACGGTCC
CCGCGAGCAGGCTGCTGCGTCGGAAGCAATGGGGAGCCGTCCGAGCTGCC
GAGGAGATAATGACATTGATCCCTCTCTTTTTCCCCGATGCCAAAGTGGT
CGTGCATTATTTTTCAAATGGTGGCTGTTTTGTACATCGTAGAATGCTGT
TACTGCAGAACGGGCATTATCGCCAGGGAGATGCAAGGCGGTTCTGCTGT
GATCCTGAACCACCCACGGACGACTACCAGTTCCCTCAGCTTGCAGGCAC
AATTTTTGATAGCTGCCCTGTCGCCGCGGATGCCGAGGCTGGGGCCAGGG
CCGTAAGCGCACGTGTGCAGGTGTGTAACTTGGTTTGGAATGCGGGAGGG
GGGAAGGGGTTGAATAAATAGAGAGAAAGGAGGGGGTTGAACGATTAGAC
GGGGATGAAGAGTGAAGCCTTCGGAGGCAGTGACGAAATTTGTTTCAACT
CACTTCTGTCACCTCGAATGGTTGCGTACTCCTTTTCAGTCGCCGATTAT
CCGCTTGCTCATGTACGCGACTATTCGCTTCGGGCTTGAGATTTACGGGA
TCGCACAATCATGGCGTTATGAGCAGAAATATATCGAGCACATTGAAAAT
GATCATACCCTCGTTCCCAGCCTCTATATCTTTTCGGAAGACGACACCAT
TACTGACCCTGCTTTGGTTGAAAGAGTGGTGGCCAAGCGGAAGGCCTACC
TTACCTCTCAAGGTTTGCCCGCTGATGTCATGCTCGAGACATGGAAGATC
ACAGATCCTTCACTTCATGTTTGTCATTACGCGCGTTATCCGATAGAGTA
CCAAAAAAAAATAAAAGATTTTCTGCAGAGACAAGGCCTAATCCCTTGAA
GAGCGTAGATGAAGGATTCAGAATGCTGCCAATAGTTCAGCAGTGAATGC
CTTGCCCTCCAATTGTAGACAAAGTAAATCACATTCGGTGCCTTTTTTAA
TTAAAGCGGCGATTGAAGCGCTCGATCGAGTGAACGTCTTCGATAAGCAA
GCTTGATGGATCGAAGAAAATTGGTTCATGCCCGTCGTTCCTTTCTTTCA
CCACTCTCGTTTCATGTAAAGCTTTATTCGAAGCGCTTGGGGAGACTTGC
CAACGATTACCCAGGGGTACTGAATCCTTCCCCATCTCTTTATTTTATTT
TCCCTTCGATCCTACTCTTCTTCGACTTTGTCTCTCAAAAAGTATTCTCT
CTCCTCCCTAGTATTTAGCATAAAATCCCAACCCATGTCGCTGTTTGGTT
CCCTTAATCGTTTTGAAGTTCCAAATCATGCCTGATATAATCACACACAG
ACGGCTGCTGATCTCTTTTCTCAACATACACTCCAAGCCTTACTGCCGTC
TGTTATTCTCAGAAATATATCGAGCACATTGAAAATGATCATACCCTCGT
TCCCAGCCTCTATATCTTTTCGGAAGACGACACCATTACTGACCCTGCTT
TGGTTGAAAGAGTGGTGGCCAAGCGGAAGGCCTACCTTACCTCTCAAGGT
TTGCCCGCTGATGTCATGCTCGAGACATGGAAGATCACAGATCCTTCACT
TCATGTTTGTCATTACGCGCGTTATCCGATAGAGTACCAAAAAAAAATAA
AAGATTTTCTGCAGAGACAAGGCCTAATCCCTTGAAGAGCGTAGATGAAG
GATTCAGAATGCTGCCAATAGTTCAGCAGTGAATGCCTTGCCCTCCAATT
GTAGACAAAGTAAATCACATTCGGTGCCTTTTTTAATTAAAGCGGCGATT
GAAGCGCTCGATCGAGTGAACGTCTTCGATAAGCAAGCTTGATGGATCGA
AGAAAATTGGTTCATGCCCGTCGTTCCTTTCTTTCACCACTCTCGTTTCA
TGTAAAGCTTTATTCGAAGCGCTTGGGGAGACTTGCCAACGATTACCCAG
GGGTACTGAATCCTTCCCCATCTCTTTATTTTATTTTCCCTTCGATCCTA
CTCTTCTTCGACTTTGTCTCTCAAAAAGTATTCTCTCTCCTCCCTAGTAT
TTAGCATAAAATCCCAACCCATGTCGCTGTTTGGTTCCCTTAATCGTTTT
GAAGTTCCAAATCATGCCTGATATAATCACACACAGACGGCTGCTGATCT
CTTTTCTCAACATACACTCCAAGCCTTACTGCCGTCTGTTATTCTCATTT
GTCTCTCGACATACAACTTTGAAAAAAATGTGATCCTGATTTCTTACGGT
ACAAGATGAAAATATTTTTCTCCTTACTTTAAGCTCCTCCTTCTATTCCA
CTTATCCACGAGCATCTCAATATCATGCTCTACTACATATCGCCTCTGTT
CCCCATTTAAATTAATCATTCAATCACGCTTCGCAGACAGGCATGGTCGA
AGGGTCGCATTGCACTCCAGCGAGCTGCGCTGAATTATACTCGATACCAT
TGCAGACACCTCCGGCTTCTGCCTCCAAGCAACAAATAGGATTCTTAAGG
AGACCACTAGTGTCACACTTCGCCCGACAGTTGGCCAGGGTGTAGGCCTC
ATTTGAGCGGGTTTCCCTAGGATATTGGCAGTACCACGCACCCGCGATCG
GTGCCACTGGCTTTTTGGTGGGCACCCTCGGAGGCACTGAAGTGGGGGCT
GGAGTGTTAGCGCCCCTCGAGCAATCGACCGGGCGTATCGCAGGGTCGCA
TTTCAATCCACTGGCCACGGCTGCAGCCTGTTCCTCCTCATTGCACACGT
TTCCTGCTGTGGCAGGGTCACAGCAGACGGGGTTCAATCGGACCCCGCTA
TCATCACACTTTACGTTGCAATTGGAGATGGTGCTTGCGTCGTT

Coding sequence (CDS) from alignment at scaffold_5:684174..687767+

>mRNA_2574 ID=mRNA_2574|Name=jgi.p|Nanoce1779_2|580808|organism=Nannochloropsis oceanica|type=CDS|length=2979bp|location=Sequence derived from alignment at scaffold_5:684174..687767+ (Nannochloropsis oceanica)
ATGGAAAAGCTCGCCGACTTGGATGCTAACAATTCTTGCCTCACGATCCC
CGCGACACGTTTTCCGGACGCGGCCGTGCCGTTCAATGACGGTCCTAACG
TGGGCCGCTTCCGTGTCACGAAGCGTGCGGCCTTAAGAATCGTACCTGTC
CCTGCAGAAGGGGAGACACCACGCGCCATAGAGAGCCGTGACAAGGTCAA
GCTTGTGGTGGTCTTGCTGGGGTGGTTGGGCTGCCAAGACAGGCATTTGA
AAAAATATGCGGAGATGTATCATGAGAGTATGAACTGCGAGGTGGTGTTG
CGGCACACGGTCCCCGCGAGCAGGCTGCTGCGTCGGAAGCAATGGGGAGC
CGTCCGAGCTGCCGAGGAGATAATGACATTGATCCCTCTCTTTTTCCCCG
ATGCCAAAGTGGTCGTGCATTATTTTTCAAATGGTGGCTGTTTTGTACAT
CGTAGAATGCTGTTACTGCAGAACGGGCATTATCGCCAGGGAGATGCAAG
GCGGTTCTGCTGTGATCCTGAACCACCCACGGACGACTACCAGTTCCCTC
AGCTTGCAGGCACAATTTTTGATAGCTGCCCTGTCGCCGCGGATGCCGAG
GCTGGGGCCAGGGCCGTAAGCGCACGTGTGCAGTCGCCGATTATCCGCTT
GCTCATGTACGCGACTATTCGCTTCGGGCTTGAGATTTACGGGATCGCAC
AATCATGGCGTTATGAGCAGAAATATATCGAGCACATTGAAAATGATCAT
ACCCTCGTTCCCAGCCTCTATATCTTTTCGGAAGACGACACCATTACTGA
CCCTGCTTTGGTTGAAAGAGTGGTGGCCAAGCGGAAGGCCTACCTTACCT
CTCAAGGTTTGCCCGCTGATGTCATGCTCGAGACATGGAAGATCACAGAT
CCTTCACTTCATGTTTGTCATTACGCGCGTTATCCGATAGAGTACCAAAA
AAAAATAAAAGATTTTCTGCAGAGACAAGGCCTAATCCCTTGAATGGAAA
AGCTCGCCGACTTGGATGCTAACAATTCTTGCCTCACGATCCCCGCGACA
CGTTTTCCGGACGCGGCCGTGCCGTTCAATGACGGTCCTAACGTGGGCCG
CTTCCGTGTCACGAAGCGTGCGGCCTTAAGAATCGTACCTGTCCCTGCAG
AAGGGGAGACACCACGCGCCATAGAGAGCCGTGACAAGGTCAAGCTTGTG
GTGGTCTTGCTGGGGTGGTTGGGCTGCCAAGACAGGCATTTGAAAAAATA
TGCGGAGATGTATCATGAGAGTATGAACTGCGAGGTGGTGTTGCGGCACA
CGGTCCCCGCGAGCAGGCTGCTGCGTCGGAAGCAATGGGGAGCCGTCCGA
GCTGCCGAGGAGATAATGACATTGATCCCTCTCTTTTTCCCCGATGCCAA
AGTGGTCGTGCATTATTTTTCAAATGGTGGCTGTTTTGTACATCGTAGAA
TGCTGTTACTGCAGAACGGGCATTATCGCCAGGGAGATGCAAGGCGGTTC
TGCTGTGATCCTGAACCACCCACGGACGACTACCAGTTCCCTCAGCTTGC
AGGCACAATTTTTGATAGCTGCCCTGTCGCCGCGGATGCCGAGGCTGGGG
CCAGGGCCGTAAGCGCACGTGTGCAGTCGCCGATTATCCGCTTGCTCATG
TACGCGACTATTCGCTTCGGGCTTGAGATTTACGGGATCGCACAATCATG
GCGTTATGAGCAGAAATATATCGAGCACATTGAAAATGATCATACCCTCG
TTCCCAGCCTCTATATCTTTTCGGAAGACGACACCATTACTGACCCTGCT
TTGGTTGAAAGAGTGGTGGCCAAGCGGAAGGCCTACCTTACCTCTCAAGG
TTTGCCCGCTGATGTCATGCTCGAGACATGGAAGATCACAGATCCTTCAC
TTCATGTTTGTCATTACGCGCGTTATCCGATAGAGTACCAAAAAAAAATA
AAAGATTTTCTGCAGAGACAAGGCCTAATCCCTTGAATGGAAAAGCTCGC
CGACTTGGATGCTAACAATTCTTGCCTCACGATCCCCGCGACACGTTTTC
CGGACGCGGCCGTGCCGTTCAATGACGGTCCTAACGTGGGCCGCTTCCGT
GTCACGAAGCGTGCGGCCTTAAGAATCGTACCTGTCCCTGCAGAAGGGGA
GACACCACGCGCCATAGAGAGCCGTGACAAGGTCAAGCTTGTGGTGGTCT
TGCTGGGGTGGTTGGGCTGCCAAGACAGGCATTTGAAAAAATATGCGGAG
ATGTATCATGAGAGTATGAACTGCGAGGTGGTGTTGCGGCACACGGTCCC
CGCGAGCAGGCTGCTGCGTCGGAAGCAATGGGGAGCCGTCCGAGCTGCCG
AGGAGATAATGACATTGATCCCTCTCTTTTTCCCCGATGCCAAAGTGGTC
GTGCATTATTTTTCAAATGGTGGCTGTTTTGTACATCGTAGAATGCTGTT
ACTGCAGAACGGGCATTATCGCCAGGGAGATGCAAGGCGGTTCTGCTGTG
ATCCTGAACCACCCACGGACGACTACCAGTTCCCTCAGCTTGCAGGCACA
ATTTTTGATAGCTGCCCTGTCGCCGCGGATGCCGAGGCTGGGGCCAGGGC
CGTAAGCGCACGTGTGCAGTCGCCGATTATCCGCTTGCTCATGTACGCGA
CTATTCGCTTCGGGCTTGAGATTTACGGGATCGCACAATCATGGCGTTAT
GAGCAGAAATATATCGAGCACATTGAAAATGATCATACCCTCGTTCCCAG
CCTCTATATCTTTTCGGAAGACGACACCATTACTGACCCTGCTTTGGTTG
AAAGAGTGGTGGCCAAGCGGAAGGCCTACCTTACCTCTCAAGGTTTGCCC
GCTGATGTCATGCTCGAGACATGGAAGATCACAGATCCTTCACTTCATGT
TTGTCATTACGCGCGTTATCCGATAGAGTACCAAAAAAAAATAAAAGATT
TTCTGCAGAGACAAGGCCTAATCCCTTGA

Synonyms

Publications