jgi.p|Nanoce1779_2|669152, mRNA_2572 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|669152
Unique NamemRNA_2572
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length764
Alignment locationscaffold_5:681772..682820 +

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Properties
Property NameValue
TranscriptId669238
TrackFilteredModels2
ProteinId669152
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:681772..682820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669152gene_2572Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669152mRNA_2572-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2572CDS_2572Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2572 ID=mRNA_2572|Name=jgi.p|Nanoce1779_2|669152|organism=Nannochloropsis oceanica|type=mRNA|length=764bp
GTACAGTGTATTACACAAACTACAAAGCTGTTGGGACTTTTATAGTTGGA
TGATTTGTCGTTGCTGTTGCTGGTGCTGTCCGGATGGGGGGGTGTATTGA
CATACTGGAATATTTCAGTGTACACCACATTGGGCGTTGAAACAAAAGGT
GGGTGGGCATCGATGGGAGGATGATTGGCCATAATGGTGATGTTGCTGGG
ATTCCCAACTCTGAACAGAGCGATGTAGAGCTGGCCGTGGGCGAAGGCAG
GTGGTCGTTGCCTCGGTTGGCAGGGTCGTCGAAGGAGCCGTAGATATGGT
TTATGAGGCGTTTCGGGTCGTTGGCCAATTCGGGCGGGGGGAGCGTGAAG
AAGGAAGTCGGCAAACCACTCGAGCTGGTGGTCAGGTCGGCCGGCCAGGC
GAGCTGCGTGGATTCGCATGTTCTCGTCGAGATGGAGGAGCTGCTTGTGT
CGCCAGAGATGACTCAAGCGAAGGGATGCACGGACGGTGGCGAAAGTCCA
GGTGCGTGCGCGCGATGCGGCGCCGGGGGGAGTCGTGGGGCTGGTGTGAA
TGAGGCGGTGGGGGGGGCCTTCTTGTGGTGCGCGGGCTTTTTGGACTTTG
AGAGCAGCGCAGATTTGTTGGGCAGCCGGTGTGTTGTTGTTGAACTGGCT
GCCAAGAGCGAAGGTGGCCCGGCGGGCGCGGTGGCCCCGGCCGTGCTGGA
GGGGTCCCTGCTCTTGGCTGTCGCTGTGGCCGTCGCTGTGGTCGTGGTGA
AGGCGACGTCGTAA
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protein sequence of jgi.p|Nanoce1779_2|669152

>mRNA_2572-protein ID=mRNA_2572-protein|Name=jgi.p|Nanoce1779_2|669152|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MRRFGSLANSGGGSVKKEVGKPLELVVRSAGQASCVDSHVLVEMEELLVS
PEMTQAKGCTDGGESPGACARCGAGGSRGAGVNEAVGGAFLWCAGFLDFE
SSADLLGSRCVVVELAAKSEGGPAGAVAPAVLEGSLLLAVAVAVAVVVVK
ATS*
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mRNA from alignment at scaffold_5:681772..682820+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2572 ID=mRNA_2572|Name=jgi.p|Nanoce1779_2|669152|organism=Nannochloropsis oceanica|type=mRNA|length=1049bp|location=Sequence derived from alignment at scaffold_5:681772..682820+ (Nannochloropsis oceanica)
GTACAGTGTATTACACAAACTACAAAGCTGTTGGGACTTTTATAGTTGGA
TGATTTGTCGTTGCTGTTGCTGGTGCTGTCCGGATGGGGGGGTGTATTGA
CATACTGGAATATTTCAGTGTACACCACATTGGGCGTTGAAACAAAAGGT
GGGTGGGCATCGATGGGAGGATGATTGGCCATAATGGTGATGTTGCTGGG
ATTCCCAACTCTGAACAGAGCGATGTAGAGCTGGCCGTGGGCGAAGGCAG
GTGGTCGTTGCCTCGGTTGGCAGGGTCGTCGAAGGAGCCGTAGATATGGT
TTATGAGGCGTTTCGGGTCGTTGGCCAATTCGGGCGGGGGGAGCGTGAAG
GTCGGGATGAGCAAATGGTTGTGGAAAAAAGGAGGCGGTGGTGTTGCATG
TGGGGAGTGTAGCGGGTCTGGAAGGGCAGGGGGCCGCCCTTTCCCAATGG
CGAGAAGGAAGTCGGCAAACCACTCGAGCTGGTGGTCAGGTCGGCCGGCC
AGGCGAGCTGCGTGGATTCGCATGTTCTCGTCGAGATGGAGGAGCTGCTT
GTGTCGCCAGAGATGACTCAAGCGAAGGGATGCACGGACGGTGGCGAAAG
TCCAGGTGCGTGCGCGCGATGCGGCGCCGGGGGGAGTCGTGGGGCTGGTG
TGAATGAGGCGGTGGGGGGGGCCTTCTTGTGGTGCGCGGGCTTTTTGGAC
TTTGAGAGCAGCGCAGATTTGTTGGGCAGCGTGTGCGGCATGTTCTAGGG
AAATGCCTTCTCGATATGTGGCTTGACGGTGCTGTTTGGCTCGGCGATGG
GAAGCAAGGCTGTCGGTGCTGCTGAGATGTAGGTCGTCCGCGGGGGCGGG
GGGCAACATCGGTGGGCACACGAGGACGACCAGGGCGACGGCGAGGTTGG
TCTTCATCTAGCGGTGTGTTGTTGTTGAACTGGCTGCCAAGAGCGAAGGT
GGCCCGGCGGGCGCGGTGGCCCCGGCCGTGCTGGAGGGGTCCCTGCTCTT
GGCTGTCGCTGTGGCCGTCGCTGTGGTCGTGGTGAAGGCGACGTCGTAA
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Coding sequence (CDS) from alignment at scaffold_5:681772..682820+

>mRNA_2572 ID=mRNA_2572|Name=jgi.p|Nanoce1779_2|669152|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_5:681772..682820+ (Nannochloropsis oceanica)
ATGAGGCGTTTCGGGTCGTTGGCCAATTCGGGCGGGGGGAGCGTGAAGAA
GGAAGTCGGCAAACCACTCGAGCTGGTGGTCAGGTCGGCCGGCCAGGCGA
GCTGCGTGGATTCGCATGTTCTCGTCGAGATGGAGGAGCTGCTTGTGTCG
CCAGAGATGACTCAAGCGAAGGGATGCACGGACGGTGGCGAAAGTCCAGG
TGCGTGCGCGCGATGCGGCGCCGGGGGGAGTCGTGGGGCTGGTGTGAATG
AGGCGGTGGGGGGGGCCTTCTTGTGGTGCGCGGGCTTTTTGGACTTTGAG
AGCAGCGCAGATTTGTTGGGCAGCCGGTGTGTTGTTGTTGAACTGGCTGC
CAAGAGCGAAGGTGGCCCGGCGGGCGCGGTGGCCCCGGCCGTGCTGGAGG
GGTCCCTGCTCTTGGCTGTCGCTGTGGCCGTCGCTGTGGTCGTGGTGAAG
GCGACGTCGTAAATGAGGCGTTTCGGGTCGTTGGCCAATTCGGGCGGGGG
GAGCGTGAAGAAGGAAGTCGGCAAACCACTCGAGCTGGTGGTCAGGTCGG
CCGGCCAGGCGAGCTGCGTGGATTCGCATGTTCTCGTCGAGATGGAGGAG
CTGCTTGTGTCGCCAGAGATGACTCAAGCGAAGGGATGCACGGACGGTGG
CGAAAGTCCAGGTGCGTGCGCGCGATGCGGCGCCGGGGGGAGTCGTGGGG
CTGGTGTGAATGAGGCGGTGGGGGGGGCCTTCTTGTGGTGCGCGGGCTTT
TTGGACTTTGAGAGCAGCGCAGATTTGTTGGGCAGCCGGTGTGTTGTTGT
TGAACTGGCTGCCAAGAGCGAAGGTGGCCCGGCGGGCGCGGTGGCCCCGG
CCGTGCTGGAGGGGTCCCTGCTCTTGGCTGTCGCTGTGGCCGTCGCTGTG
GTCGTGGTGAAGGCGACGTCGTAAATGAGGCGTTTCGGGTCGTTGGCCAA
TTCGGGCGGGGGGAGCGTGAAGAAGGAAGTCGGCAAACCACTCGAGCTGG
TGGTCAGGTCGGCCGGCCAGGCGAGCTGCGTGGATTCGCATGTTCTCGTC
GAGATGGAGGAGCTGCTTGTGTCGCCAGAGATGACTCAAGCGAAGGGATG
CACGGACGGTGGCGAAAGTCCAGGTGCGTGCGCGCGATGCGGCGCCGGGG
GGAGTCGTGGGGCTGGTGTGAATGAGGCGGTGGGGGGGGCCTTCTTGTGG
TGCGCGGGCTTTTTGGACTTTGAGAGCAGCGCAGATTTGTTGGGCAGCCG
GTGTGTTGTTGTTGAACTGGCTGCCAAGAGCGAAGGTGGCCCGGCGGGCG
CGGTGGCCCCGGCCGTGCTGGAGGGGTCCCTGCTCTTGGCTGTCGCTGTG
GCCGTCGCTGTGGTCGTGGTGAAGGCGACGTCGTAA
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Synonyms
Publications