jgi.p|Nanoce1779_2|580804, mRNA_2571 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580804
Unique Name	mRNA_2571
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2800
Alignment location	scaffold_5:678795..681594 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580890
Track	FilteredModels2
ProteinId	580804

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:678795..681594 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580804	gene_2571	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580804	mRNA_2571-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2571	CDS_2571	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:678795..681594+
coding sequence from alignment at scaffold_5:678795..681594+

mRNA sequence

>mRNA_2571 ID=mRNA_2571|Name=jgi.p|Nanoce1779_2|580804|organism=Nannochloropsis oceanica|type=mRNA|length=2800bp
ACAAAAGATCTGACCATGGTGGGTTTCCTTCCTCGTGTCGGCGTCGCCCG
CCTTTTGGGCGCTGCCGCGTCTTCGCTGCTGTTCGTCTCATCCACATCAG
CCCAAAGCTTTCCAGGTTGCTCGTCAGCCGATATGCGCCAGCTCACGTTT
GTCGGCCGGGGGCTGATGGGCTGCTTTAGCTTGTCCTTGAGCGAGGTGTT
CATGTTCATGGGGGGGATGTCGGCGGATCAAGACGCGTGGCTGGAGCGCT
GCTCCCAGTCATCGGAAGACTATCAAAGCGAATGCTTTCAGCTCCTCGAG
TCTTTTTTGCAGCAGGCCGCCAGTCAGCCAGGTTCTCTGCCAGCCAAGGT
AGTGAGCAACGTGTACAAGAACCCGCCCCAAGTGCTCGATTGCGTGGCGC
AGATCAACAACCAGGTGGAAACGTTTAGCCCCACGTGCAAGGATGGTGCC
ATGCTCGGGCAAATCACCCGGGCATCAGCTCGCCTGGCACCTTACATTGA
CAGCATCCAGCCTTGGCGTTTGCCTCCCCAAATTCAGGGATGTGCGGTGA
ACGACTTACTGAACTTGCAGCTGGCTTATTTGCCTTTTATTGACTGCCTG
AATTTCAATTTCACCCAGCTCGCGGAGGGCTTCACGACGTCAAGCGGCCC
TGGAATGGGTGCGCAATTGGAGGACGCCACTATCCGTGCAGGAATTAGCT
GCTTGTATGACCCACATATGAGTAATGCCGATTGTATGTACTTGGTGGTC
GTGGCTTCGACCAAGTTGCAGGGTGGGAGCTGGAGTGACATGGGGGTATA
TGCCATGCGGGCCTTGACTGACTACCCGCAAGCCTGTCAGTGCGTCCGTG
GAGCGAGCCAATCCGCAGCCTTCTCGGCGGTGGCGACCAGCTGCCCCGCA
CATGATACGTTGAATTTCCTGACGGCCTTGGAAGCGTCCTGTGCGTTTGA
GCCGCAGATCCAGTCGAGTTTGAGCAAGGCGCTGAATGGCTGCTCGGATG
CAGATGTGGTGCGGACAGAGTTGGTTGGGCTGCAGGTTCTTGATTGTATG
GAGGCAAACGGGGGGGATCTAGCGGGGAGCACGGATGTGTTGACGGAGGC
GAGGGTTGCTCAGATTGCCAACTGTGTGAATAAGCCCGGGTATGATAATG
CAGAGTGCTTGGGCTTATTAGGTTCGCTTGCCCGCATTGCGGCAGATGAG
CCTGATAGCTTGGAGGCGCAGGTGGTGGAGAAGATGACAAAAGACGGGGC
GGCTTTTTGTGGATGCTTGGACCGGGCGGCTAGGAGCCCTCCGGCAAAAG
ACTTGTCGCCCACATGCGAGGTGCCTTATTCGGGGATCAAATTTCTACAA
GACAACAAGAAATACTGCGAGGCCATTGCGGCCGTGCCTCCCTCTTTTTG
GACGGCGGCAGCTGCGGGGATTGCAGCTGCGGCCAAGGCGCCCTTATCTT
CCGAGACGGTACCAAAGGCGGGGGAAAAGCCGACCGAGACCCCAGTGACG
GAGGAGGTGGAGCTGGGGCCGACCGGACCAAAGCATCTTCCTCAAAAATC
GGACAGTGGCTTTTGGGACCATTTGCCGGCCTTTTCTTCGGCGAGTTTTA
TGAGTCAGTCCTCGGAGTCGGATGAAGGCGGAAAGGATGTGGAGACAGGA
AGGCGATTGGAGCATGGCGGGGACGACAAGCTACGTCTTGTGGGGGGAGC
GAAGGCCGAGTTGGTGGGCGAGCACCCACATTTGCGGTTCAAAGGAAATA
CCCAAAAGCAGAAGGAGGCGTAACTCATGGTAATGAATGTATCCAGACAG
AAGGGGTTGAACTAAATGTGTGTGAGAGAAGAAATGCTAGGGTGTATGAG
TAAGATGAAAATAGATGCGTGCTAGCAAGAGGCGGGGAATTTACATTTCA
CTGTGGCTCTTTCGACTGGAATCGAGAAACAAAGACTCAAATGAAATGCC
GCGAAGCTTTGAAATGAAATGAAAGGGATTTTGGGGGGAGGTGTTTTTTG
CTTTCATTGTCAGAAGAGCGACTGGTTGTCAATTTCTTGATGTCAAAATG
TCTCTGAGTGAAGGGTCGGTCACGTAAGACACTTTGGCCAGCTCGCTCTG
TCTCAATTGAGAGGTGATCACCGTTGGAAAGGGCCTAACGAATAAGGGGG
AGGTCGGAGAGGTGCAGCTTTTGGCCCAATAGAGACGTCAACTTCACCCA
TCTACGGGTAGCGGAGGAATGCAGTTGAAAAGCTCCATGCTCAATTTTTA
ATTATCAATGGAGCCCACGGTACTCTTCCGACAGAACCATCCTAGGTAAA
TACAAAATTGTTGACGCGGGTCTTTTAATTTTTCTTTCATTCATACGCAC
GGGTCCCCAACGGAAAGCCTTCTTCGATGGTGAGTCGACCAGTCTCTCCC
TCCGTGTCCTCGGTGTCCAAAGCACTCGGGGTGCATGGCATCTGCTCTCC
ACGCTTCGGCCTTTCTTGGCTTCGTCTTGTGCTGAAGCGTACCAGAGTTA
TGGCGGTGGGAAGTGAAATTGAAACACGCCCGAGAGGCCACGGCGCCTAT
TATGGGCGGTAATGATGGCAACGAAGCCGTGGAAAAAACTCTAAACTTAC
GAAACTGTATTTCTTAGAACTCTTCTTAAAAAGATTATCCTTGGGAGGGT
GAGTTCTACACTTAATTATTACTAGCTTGAAAGCCCGCACTCTTGCGGGC
ATGTGCTCGAAAGTTCCAGTAGTGAGAGAAGTTGTTACAGGAAGTGTAGA
ACAGGTGAGAAGCGGGGAGGCGTCTGAAGACGTAAATGTTGTGATGGAGG

protein sequence of jgi.p|Nanoce1779_2|580804

>mRNA_2571-protein ID=mRNA_2571-protein|Name=jgi.p|Nanoce1779_2|580804|organism=Nannochloropsis oceanica|type=polypeptide|length=586bp
MVGFLPRVGVARLLGAAASSLLFVSSTSAQSFPGCSSADMRQLTFVGRGL
MGCFSLSLSEVFMFMGGMSADQDAWLERCSQSSEDYQSECFQLLESFLQQ
AASQPGSLPAKVVSNVYKNPPQVLDCVAQINNQVETFSPTCKDGAMLGQI
TRASARLAPYIDSIQPWRLPPQIQGCAVNDLLNLQLAYLPFIDCLNFNFT
QLAEGFTTSSGPGMGAQLEDATIRAGISCLYDPHMSNADCMYLVVVASTK
LQGGSWSDMGVYAMRALTDYPQACQCVRGASQSAAFSAVATSCPAHDTLN
FLTALEASCAFEPQIQSSLSKALNGCSDADVVRTELVGLQVLDCMEANGG
DLAGSTDVLTEARVAQIANCVNKPGYDNAECLGLLGSLARIAADEPDSLE
AQVVEKMTKDGAAFCGCLDRAARSPPAKDLSPTCEVPYSGIKFLQDNKKY
CEAIAAVPPSFWTAAAAGIAAAAKAPLSSETVPKAGEKPTETPVTEEVEL
GPTGPKHLPQKSDSGFWDHLPAFSSASFMSQSSESDEGGKDVETGRRLEH
GGDDKLRLVGGAKAELVGEHPHLRFKGNTQKQKEA*

mRNA from alignment at scaffold_5:678795..681594+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2571 ID=mRNA_2571|Name=jgi.p|Nanoce1779_2|580804|organism=Nannochloropsis oceanica|type=mRNA|length=2800bp|location=Sequence derived from alignment at scaffold_5:678795..681594+ (Nannochloropsis oceanica)
ACAAAAGATCTGACCATGGTGGGTTTCCTTCCTCGTGTCGGCGTCGCCCG
CCTTTTGGGCGCTGCCGCGTCTTCGCTGCTGTTCGTCTCATCCACATCAG
CCCAAAGCTTTCCAGGTTGCTCGTCAGCCGATATGCGCCAGCTCACGTTT
GTCGGCCGGGGGCTGATGGGCTGCTTTAGCTTGTCCTTGAGCGAGGTGTT
CATGTTCATGGGGGGGATGTCGGCGGATCAAGACGCGTGGCTGGAGCGCT
GCTCCCAGTCATCGGAAGACTATCAAAGCGAATGCTTTCAGCTCCTCGAG
TCTTTTTTGCAGCAGGCCGCCAGTCAGCCAGGTTCTCTGCCAGCCAAGGT
AGTGAGCAACGTGTACAAGAACCCGCCCCAAGTGCTCGATTGCGTGGCGC
AGATCAACAACCAGGTGGAAACGTTTAGCCCCACGTGCAAGGATGGTGCC
ATGCTCGGGCAAATCACCCGGGCATCAGCTCGCCTGGCACCTTACATTGA
CAGCATCCAGCCTTGGCGTTTGCCTCCCCAAATTCAGGGATGTGCGGTGA
ACGACTTACTGAACTTGCAGCTGGCTTATTTGCCTTTTATTGACTGCCTG
AATTTCAATTTCACCCAGCTCGCGGAGGGCTTCACGACGTCAAGCGGCCC
TGGAATGGGTGCGCAATTGGAGGACGCCACTATCCGTGCAGGAATTAGCT
GCTTGTATGACCCACATATGAGTAATGCCGATTGTATGTACTTGGTGGTC
GTGGCTTCGACCAAGTTGCAGGGTGGGAGCTGGAGTGACATGGGGGTATA
TGCCATGCGGGCCTTGACTGACTACCCGCAAGCCTGTCAGTGCGTCCGTG
GAGCGAGCCAATCCGCAGCCTTCTCGGCGGTGGCGACCAGCTGCCCCGCA
CATGATACGTTGAATTTCCTGACGGCCTTGGAAGCGTCCTGTGCGTTTGA
GCCGCAGATCCAGTCGAGTTTGAGCAAGGCGCTGAATGGCTGCTCGGATG
CAGATGTGGTGCGGACAGAGTTGGTTGGGCTGCAGGTTCTTGATTGTATG
GAGGCAAACGGGGGGGATCTAGCGGGGAGCACGGATGTGTTGACGGAGGC
GAGGGTTGCTCAGATTGCCAACTGTGTGAATAAGCCCGGGTATGATAATG
CAGAGTGCTTGGGCTTATTAGGTTCGCTTGCCCGCATTGCGGCAGATGAG
CCTGATAGCTTGGAGGCGCAGGTGGTGGAGAAGATGACAAAAGACGGGGC
GGCTTTTTGTGGATGCTTGGACCGGGCGGCTAGGAGCCCTCCGGCAAAAG
ACTTGTCGCCCACATGCGAGGTGCCTTATTCGGGGATCAAATTTCTACAA
GACAACAAGAAATACTGCGAGGCCATTGCGGCCGTGCCTCCCTCTTTTTG
GACGGCGGCAGCTGCGGGGATTGCAGCTGCGGCCAAGGCGCCCTTATCTT
CCGAGACGGTACCAAAGGCGGGGGAAAAGCCGACCGAGACCCCAGTGACG
GAGGAGGTGGAGCTGGGGCCGACCGGACCAAAGCATCTTCCTCAAAAATC
GGACAGTGGCTTTTGGGACCATTTGCCGGCCTTTTCTTCGGCGAGTTTTA
TGAGTCAGTCCTCGGAGTCGGATGAAGGCGGAAAGGATGTGGAGACAGGA
AGGCGATTGGAGCATGGCGGGGACGACAAGCTACGTCTTGTGGGGGGAGC
GAAGGCCGAGTTGGTGGGCGAGCACCCACATTTGCGGTTCAAAGGAAATA
CCCAAAAGCAGAAGGAGGCGTAACTCATGGTAATGAATGTATCCAGACAG
AAGGGGTTGAACTAAATGTGTGTGAGAGAAGAAATGCTAGGGTGTATGAG
TAAGATGAAAATAGATGCGTGCTAGCAAGAGGCGGGGAATTTACATTTCA
CTGTGGCTCTTTCGACTGGAATCGAGAAACAAAGACTCAAATGAAATGCC
GCGAAGCTTTGAAATGAAATGAAAGGGATTTTGGGGGGAGGTGTTTTTTG
CTTTCATTGTCAGAAGAGCGACTGGTTGTCAATTTCTTGATGTCAAAATG
TCTCTGAGTGAAGGGTCGGTCACGTAAGACACTTTGGCCAGCTCGCTCTG
TCTCAATTGAGAGGTGATCACCGTTGGAAAGGGCCTAACGAATAAGGGGG
AGGTCGGAGAGGTGCAGCTTTTGGCCCAATAGAGACGTCAACTTCACCCA
TCTACGGGTAGCGGAGGAATGCAGTTGAAAAGCTCCATGCTCAATTTTTA
ATTATCAATGGAGCCCACGGTACTCTTCCGACAGAACCATCCTAGGTAAA
TACAAAATTGTTGACGCGGGTCTTTTAATTTTTCTTTCATTCATACGCAC
GGGTCCCCAACGGAAAGCCTTCTTCGATGGTGAGTCGACCAGTCTCTCCC
TCCGTGTCCTCGGTGTCCAAAGCACTCGGGGTGCATGGCATCTGCTCTCC
ACGCTTCGGCCTTTCTTGGCTTCGTCTTGTGCTGAAGCGTACCAGAGTTA
TGGCGGTGGGAAGTGAAATTGAAACACGCCCGAGAGGCCACGGCGCCTAT
TATGGGCGGTAATGATGGCAACGAAGCCGTGGAAAAAACTCTAAACTTAC
GAAACTGTATTTCTTAGAACTCTTCTTAAAAAGATTATCCTTGGGAGGGT
GAGTTCTACACTTAATTATTACTAGCTTGAAAGCCCGCACTCTTGCGGGC
ATGTGCTCGAAAGTTCCAGTAGTGAGAGAAGTTGTTACAGGAAGTGTAGA
ACAGGTGAGAAGCGGGGAGGCGTCTGAAGACGTAAATGTTGTGATGGAGG

Coding sequence (CDS) from alignment at scaffold_5:678795..681594+

>mRNA_2571 ID=mRNA_2571|Name=jgi.p|Nanoce1779_2|580804|organism=Nannochloropsis oceanica|type=CDS|length=1758bp|location=Sequence derived from alignment at scaffold_5:678795..681594+ (Nannochloropsis oceanica)
ATGGTGGGTTTCCTTCCTCGTGTCGGCGTCGCCCGCCTTTTGGGCGCTGC
CGCGTCTTCGCTGCTGTTCGTCTCATCCACATCAGCCCAAAGCTTTCCAG
GTTGCTCGTCAGCCGATATGCGCCAGCTCACGTTTGTCGGCCGGGGGCTG
ATGGGCTGCTTTAGCTTGTCCTTGAGCGAGGTGTTCATGTTCATGGGGGG
GATGTCGGCGGATCAAGACGCGTGGCTGGAGCGCTGCTCCCAGTCATCGG
AAGACTATCAAAGCGAATGCTTTCAGCTCCTCGAGTCTTTTTTGCAGCAG
GCCGCCAGTCAGCCAGGTTCTCTGCCAGCCAAGGTAGTGAGCAACGTGTA
CAAGAACCCGCCCCAAGTGCTCGATTGCGTGGCGCAGATCAACAACCAGG
TGGAAACGTTTAGCCCCACGTGCAAGGATGGTGCCATGCTCGGGCAAATC
ACCCGGGCATCAGCTCGCCTGGCACCTTACATTGACAGCATCCAGCCTTG
GCGTTTGCCTCCCCAAATTCAGGGATGTGCGGTGAACGACTTACTGAACT
TGCAGCTGGCTTATTTGCCTTTTATTGACTGCCTGAATTTCAATTTCACC
CAGCTCGCGGAGGGCTTCACGACGTCAAGCGGCCCTGGAATGGGTGCGCA
ATTGGAGGACGCCACTATCCGTGCAGGAATTAGCTGCTTGTATGACCCAC
ATATGAGTAATGCCGATTGTATGTACTTGGTGGTCGTGGCTTCGACCAAG
TTGCAGGGTGGGAGCTGGAGTGACATGGGGGTATATGCCATGCGGGCCTT
GACTGACTACCCGCAAGCCTGTCAGTGCGTCCGTGGAGCGAGCCAATCCG
CAGCCTTCTCGGCGGTGGCGACCAGCTGCCCCGCACATGATACGTTGAAT
TTCCTGACGGCCTTGGAAGCGTCCTGTGCGTTTGAGCCGCAGATCCAGTC
GAGTTTGAGCAAGGCGCTGAATGGCTGCTCGGATGCAGATGTGGTGCGGA
CAGAGTTGGTTGGGCTGCAGGTTCTTGATTGTATGGAGGCAAACGGGGGG
GATCTAGCGGGGAGCACGGATGTGTTGACGGAGGCGAGGGTTGCTCAGAT
TGCCAACTGTGTGAATAAGCCCGGGTATGATAATGCAGAGTGCTTGGGCT
TATTAGGTTCGCTTGCCCGCATTGCGGCAGATGAGCCTGATAGCTTGGAG
GCGCAGGTGGTGGAGAAGATGACAAAAGACGGGGCGGCTTTTTGTGGATG
CTTGGACCGGGCGGCTAGGAGCCCTCCGGCAAAAGACTTGTCGCCCACAT
GCGAGGTGCCTTATTCGGGGATCAAATTTCTACAAGACAACAAGAAATAC
TGCGAGGCCATTGCGGCCGTGCCTCCCTCTTTTTGGACGGCGGCAGCTGC
GGGGATTGCAGCTGCGGCCAAGGCGCCCTTATCTTCCGAGACGGTACCAA
AGGCGGGGGAAAAGCCGACCGAGACCCCAGTGACGGAGGAGGTGGAGCTG
GGGCCGACCGGACCAAAGCATCTTCCTCAAAAATCGGACAGTGGCTTTTG
GGACCATTTGCCGGCCTTTTCTTCGGCGAGTTTTATGAGTCAGTCCTCGG
AGTCGGATGAAGGCGGAAAGGATGTGGAGACAGGAAGGCGATTGGAGCAT
GGCGGGGACGACAAGCTACGTCTTGTGGGGGGAGCGAAGGCCGAGTTGGT
GGGCGAGCACCCACATTTGCGGTTCAAAGGAAATACCCAAAAGCAGAAGG
AGGCGTAA

Synonyms

Publications