jgi.p|Nanoce1779_2|524977, mRNA_2570 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|524977
Unique NamemRNA_2570
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length309
Alignment locationscaffold_5:677430..677849 -

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Properties
Property NameValue
TranscriptId525063
TrackFilteredModels2
ProteinId524977
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:677430..677849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524977gene_2570Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524977mRNA_2570-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2570CDS_2570Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2570 ID=mRNA_2570|Name=jgi.p|Nanoce1779_2|524977|organism=Nannochloropsis oceanica|type=mRNA|length=309bp
ATGCACATCCAGGCCGACCTGAGGACGTTTGATTTGCGGAAATTGGGCAC
CAAATTTGATCTGATTTACATTGATCCACCCTGGGAGGAGTACGCCCGTC
GAGCGGCACCCTTTGTGGATTTGGAGGCCCTTCCAATTGGGGAGATTGGG
AGTGTCCCTAGCTTTGTGTTTTTATGGTGCGGCTCGGGAGGTCGGGTCAC
TGAGGACGCGTCGCAGGGGGCTTTGCACGTCGAAGACGGTCGACGCCTGC
TTAGAAAGTGGGGCTACCGACGCTGTGAAGAAGTCTGCTGGGTCAAAACA
AATAAACAA
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protein sequence of jgi.p|Nanoce1779_2|524977

>mRNA_2570-protein ID=mRNA_2570-protein|Name=jgi.p|Nanoce1779_2|524977|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MHIQADLRTFDLRKLGTKFDLIYIDPPWEEYARRAAPFVDLEALPIGEIG
SVPSFVFLWCGSGGRVTEDASQGALHVEDGRRLLRKWGYRRCEEVCWVKT
NKQ
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mRNA from alignment at scaffold_5:677430..677849-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2570 ID=mRNA_2570|Name=jgi.p|Nanoce1779_2|524977|organism=Nannochloropsis oceanica|type=mRNA|length=420bp|location=Sequence derived from alignment at scaffold_5:677430..677849- (Nannochloropsis oceanica)
ATGCACATCCAGGCCGACCTGAGGACGTTTGATTTGCGGAAATTGGGCAC
CAAATTTGATCTGATTTACATTGATCCACCCTGGGAGGAGTACGCCCGTC
GAGCGGCACCCTTTGTGGTGGGAGGCAAGAAGAGTCCTAGGGGGTCGTCA
TCGTCGTCAGCCTCTCCCTCGTCTTCTAGCACCACGGATGCAACATCATC
GCAACTTGATCAATTATGGCGGTATGAGGATTTGGAGGCCCTTCCAATTG
GGGAGATTGGGAGTGTCCCTAGCTTTGTGTTTTTATGGTGCGGCTCGGGA
GGTCGGGTCACTGAGGACGCGTCGCAGGGGGCTTTGCACGTCGAAGACGG
TCGACGCCTGCTTAGAAAGTGGGGCTACCGACGCTGTGAAGAAGTCTGCT
GGGTCAAAACAAATAAACAA
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Coding sequence (CDS) from alignment at scaffold_5:677430..677849-

>mRNA_2570 ID=mRNA_2570|Name=jgi.p|Nanoce1779_2|524977|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_5:677430..677849- (Nannochloropsis oceanica)
GATTTGGAGGCCCTTCCAATTGGGGAGATTGGGAGTGTCCCTAGCTTTGT
GTTTTTATGGTGCGGCTCGGGAGGTCGGGTCACTGAGGACGCGTCGCAGG
GGGCTTTGCACGTCGAAGACGGTCGACGCCTGCTTAGAAAGTGGGGCTAC
CGACGCTGTGAAGAAGTCTGCTGGGTCAAAACAAATAAACAAATGCACAT
CCAGGCCGACCTGAGGACGTTTGATTTGCGGAAATTGGGCACCAAATTTG
ATCTGATTTACATTGATCCACCCTGGGAGGAGTACGCCCGTCGAGCGGCA
CCCTTTGTGGATTTGGAGGCCCTTCCAATTGGGGAGATTGGGAGTGTCCC
TAGCTTTGTGTTTTTATGGTGCGGCTCGGGAGGTCGGGTCACTGAGGACG
CGTCGCAGGGGGCTTTGCACGTCGAAGACGGTCGACGCCTGCTTAGAAAG
TGGGGCTACCGACGCTGTGAAGAAGTCTGCTGGGTCAAAACAAATAAACA
AATGCACATCCAGGCCGACCTGAGGACGTTTGATTTGCGGAAATTGGGCA
CCAAATTTGATCTGATTTACATTGATCCACCCTGGGAGGAGTACGCCCGT
CGAGCGGCACCCTTTGTG
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Synonyms
Publications