jgi.p|Nanoce1779_2|576725, mRNA_257 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576725
Unique NamemRNA_257
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1488
Alignment locationscaffold_3:639167..640677 +

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Properties
Property NameValue
TranscriptId576811
TrackFilteredModels2
ProteinId576725
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:639167..640677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576725gene_257Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576725mRNA_257-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_257CDS_257Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_257 ID=mRNA_257|Name=jgi.p|Nanoce1779_2|576725|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp
GGGGGAGGAGGTCGAGTCGCGTCTGCCAAGGCAAGTCAAAAAGGTATGAA
GAAAAGACACCCACGAGTGGCCATTTGTGCTATTTGTTTGGGTTTGTCAG
AAAACCCATTGTACATCTCCTCAGTGAAGTAAAGACAGGGAAGAGAGTAG
TTTAAGTCAGGAAAGAGCATCGACATACAAACAGTAGTCTTTTCGGAACG
TGGACAGATAATAATCCCAAACCTTAAGTATTGACACGTCGTTTCCATCG
TTATTCTTTGTAAATTAGCGGCTCTGCGGCAGCTTCCGTCGAATCAAGAT
CGTTTCCGACAAGGCGACGGTGGTGGGAGCCTCGGTGGAGAAGGGAGACT
TTTGTCGGATAGTGAAGGCGGAGATGACTTAAGGGTTTATGCATGGGGGT
GAGTGACACCAAAAAAGTCCGATGTGTGATGATGTGATGCATTGTACATT
TATCGGTTTTCATCTTCTGGTTTTCCCCTCCTTGAATTGCACAAGCCTCA
CGCTTTAACCTGTAGTGGTAGTTGAAACATCGCACCGCCGTTTGATTCTC
TCTCTTATCTATCCGACTGTAGCACGGATTCGCAATTTGGTCATCACCAC
GTCCTGGCCGAGGAGGCTGCTGACGAGGAGGCACCAGCGGACCTGCCTTC
CTTGGGCCTGGTAAGAAATAACATGTACATAAACTTGTTTGATTGCTTTT
GCGTTTACTTCGACTGTCAACACCCGTACAGCTTTTTTACAGCATCTTCA
TTTGTACTTTTCCCATCACTTAGGATGTAAGGGCACTAGCGGAAGGGCTG
ATATGCTTGCCTGCGCATGTCCGCCTCGGGGGTGTGGACCCGGCCTTGAC
GAAGAGAGCAGTCGGCACGAACCCGCAATCCATCCGTCCTTTTATGTTTG
CTTTTGCCATTATTATTTGCTCTTGTTCTTTTTCCTTGTGTCGAAACAGG
AGGGGTTGATGTTCCGGCAGGGATACCCGCCACCGAACGAGGGCCAAACC
CCAGCACCACCACCCAAGCTATTAGCTGAGCTCGTCGGCAGTCTGACAAG
CGCAAACACGGACAAGCACTTCGTGACCGACACCACAATATCCACCGCTC
CGCCTTTGCCCTCCTTGGAGCCACCGCTCGAGGCGCTTTTGGGTCTCGAG
CTGTCGTCGTCCACTATCGAAGAGGAAAAGAAAACGGGGGGGGCAGTAAA
GGCAGCTGCAACGCCCTCATCTAGTTCATCTGCGCTTCTTACATCCGATC
TGGACGATCTCTTAAACATAAGCTTAAAATCACGGAAAAGCGTTGGAGAT
GGGATTAGTGGTGGTGACGGAAAAAAGGCGCCCAGCAACGAGGAAGAAGT
CGACGGTCCAATTTCCTCTGCTGCTTTTTCAAGCAAGGCAAAGAAGTTGT
CCGCGCTGGATGCGGGCGATTATTAAAAGATAAAAGAAATAATCACAGAA
TGCATCAAAAACTCCATGTTCTCGGATGCTCCACGACA
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protein sequence of jgi.p|Nanoce1779_2|576725

>mRNA_257-protein ID=mRNA_257-protein|Name=jgi.p|Nanoce1779_2|576725|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MLACACPPRGCGPGLDEESSRHEPAIHPSFYVCFCHYYLLLFFFLVSKQE
GLMFRQGYPPPNEGQTPAPPPKLLAELVGSLTSANTDKHFVTDTTISTAP
PLPSLEPPLEALLGLELSSSTIEEEKKTGGAVKAAATPSSSSSALLTSDL
DDLLNISLKSRKSVGDGISGGDGKKAPSNEEEVDGPISSAAFSSKAKKLS
ALDAGDY*
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mRNA from alignment at scaffold_3:639167..640677+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_257 ID=mRNA_257|Name=jgi.p|Nanoce1779_2|576725|organism=Nannochloropsis oceanica|type=mRNA|length=1511bp|location=Sequence derived from alignment at scaffold_3:639167..640677+ (Nannochloropsis oceanica)
GGGGGAGGAGGTCGAGTCGCGTCTGCCAAGGCAAGTCAAAAAGGTATGAA
GAAAAGACACCCACGAGTGGCCATTTGTGCTATTTGTTTGGGTTTGTCAG
AAAACCCATTGTACATCTCCTCAGTGAAGTAAAGACAGGGAAGAGAGTAG
TTTAAGTCAGGAAAGAGCATCGACATACAAACAGTAGTCTTTTCGGAACG
TGGACAGATAATAATCCCAAACCTTAAGTATTGACACGTCGTTTCCATCG
TTATTCTTTGTAAATTAGCGGCTCTGCGGCAGCTTCCGTCGAATCAAGAT
CGTTTCCGACAAGGCGACGGTGGTGGGAGCCTCGGTGGAGAAGGGAGACT
TTTGTCGGATAGTGAAGGCGGAGATGACTTAAGGGTTTATGCATGGGGGT
GAGTGACACCAAAAAAGTCCGATGTGTGATGATGTGATGCATTGTACATT
TATCGGTTTTCATCTTCTGGTTTTCCCCTCCTTGAATTGCACAAGCCTCA
CGCTTTAACCTGTAGTGGTAGTTGAAACATCGCACCGCCGTTTGATTCTC
TCTCTTATCTATCCGACTGTAGCACGGATTCGCAATTTGGTCATCACCAC
GTCCTGGCCGAGGAGGCTGCTGACGAGGAGGCACCAGCGGACCTGCCTTC
CTTGGGCCTGGTAAGAAATAACATGTACATAAACTTGTTTGATTGCTTTT
GCGTTTACTTCGACTGTCAACACCCGTACAGCTTTTTTACAGCATCTTCA
TTTGTACTTTTCCCATCACTTAGGATGTAAGGGCACTAGCGGAAGGGCTG
ATATGCTTGCCTGCGCATGTCCGCCTCGGGGGTGTGGACCCGGCCTTGAC
GGTAGGAAGGGTTGGGCAGGGAAGAAGAGAGCAGTCGGCACGAACCCGCA
ATCCATCCGTCCTTTTATGTTTGCTTTTGCCATTATTATTTGCTCTTGTT
CTTTTTCCTTGTGTCGAAACAGGAGGGGTTGATGTTCCGGCAGGGATACC
CGCCACCGAACGAGGGCCAAACCCCAGCACCACCACCCAAGCTATTAGCT
GAGCTCGTCGGCAGTCTGACAAGCGCAAACACGGACAAGCACTTCGTGAC
CGACACCACAATATCCACCGCTCCGCCTTTGCCCTCCTTGGAGCCACCGC
TCGAGGCGCTTTTGGGTCTCGAGCTGTCGTCGTCCACTATCGAAGAGGAA
AAGAAAACGGGGGGGGCAGTAAAGGCAGCTGCAACGCCCTCATCTAGTTC
ATCTGCGCTTCTTACATCCGATCTGGACGATCTCTTAAACATAAGCTTAA
AATCACGGAAAAGCGTTGGAGATGGGATTAGTGGTGGTGACGGAAAAAAG
GCGCCCAGCAACGAGGAAGAAGTCGACGGTCCAATTTCCTCTGCTGCTTT
TTCAAGCAAGGCAAAGAAGTTGTCCGCGCTGGATGCGGGCGATTATTAAA
AGATAAAAGAAATAATCACAGAATGCATCAAAAACTCCATGTTCTCGGAT
GCTCCACGACA
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Coding sequence (CDS) from alignment at scaffold_3:639167..640677+

>mRNA_257 ID=mRNA_257|Name=jgi.p|Nanoce1779_2|576725|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_3:639167..640677+ (Nannochloropsis oceanica)
ATGCTTGCCTGCGCATGTCCGCCTCGGGGGTGTGGACCCGGCCTTGACGA
AGAGAGCAGTCGGCACGAACCCGCAATCCATCCGTCCTTTTATGTTTGCT
TTTGCCATTATTATTTGCTCTTGTTCTTTTTCCTTGTGTCGAAACAGGAG
GGGTTGATGTTCCGGCAGGGATACCCGCCACCGAACGAGGGCCAAACCCC
AGCACCACCACCCAAGCTATTAGCTGAGCTCGTCGGCAGTCTGACAAGCG
CAAACACGGACAAGCACTTCGTGACCGACACCACAATATCCACCGCTCCG
CCTTTGCCCTCCTTGGAGCCACCGCTCGAGGCGCTTTTGGGTCTCGAGCT
GTCGTCGTCCACTATCGAAGAGGAAAAGAAAACGGGGGGGGCAGTAAAGG
CAGCTGCAACGCCCTCATCTAGTTCATCTGCGCTTCTTACATCCGATCTG
GACGATCTCTTAAACATAAGCTTAAAATCACGGAAAAGCGTTGGAGATGG
GATTAGTGGTGGTGACGGAAAAAAGGCGCCCAGCAACGAGGAAGAAGTCG
ACGGTCCAATTTCCTCTGCTGCTTTTTCAAGCAAGGCAAAGAAGTTGTCC
GCGCTGGATGCGGGCGATTATTAAATGCTTGCCTGCGCATGTCCGCCTCG
GGGGTGTGGACCCGGCCTTGACGAAGAGAGCAGTCGGCACGAACCCGCAA
TCCATCCGTCCTTTTATGTTTGCTTTTGCCATTATTATTTGCTCTTGTTC
TTTTTCCTTGTGTCGAAACAGGAGGGGTTGATGTTCCGGCAGGGATACCC
GCCACCGAACGAGGGCCAAACCCCAGCACCACCACCCAAGCTATTAGCTG
AGCTCGTCGGCAGTCTGACAAGCGCAAACACGGACAAGCACTTCGTGACC
GACACCACAATATCCACCGCTCCGCCTTTGCCCTCCTTGGAGCCACCGCT
CGAGGCGCTTTTGGGTCTCGAGCTGTCGTCGTCCACTATCGAAGAGGAAA
AGAAAACGGGGGGGGCAGTAAAGGCAGCTGCAACGCCCTCATCTAGTTCA
TCTGCGCTTCTTACATCCGATCTGGACGATCTCTTAAACATAAGCTTAAA
ATCACGGAAAAGCGTTGGAGATGGGATTAGTGGTGGTGACGGAAAAAAGG
CGCCCAGCAACGAGGAAGAAGTCGACGGTCCAATTTCCTCTGCTGCTTTT
TCAAGCAAGGCAAAGAAGTTGTCCGCGCTGGATGCGGGCGATTATTAA
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Synonyms
Publications