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Properties
| Property Name | Value |
|---|
| TranscriptId | 538945 |
| Track | FilteredModels2 |
| ProteinId | 538859 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:676235..677843 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2569 ID=mRNA_2569|Name=jgi.p|Nanoce1779_2|538859|organism=Nannochloropsis oceanica|type=mRNA|length=1498bp
ATCCAGGCCGACCTGAGGACGTTTGATTTGCGGAAATTGGGCACCAAATT
TGATCTGATTTACATTGATCCACCCTGGGAGGAGTACGCCCGTCGAGCGG
CACCCTTTGTGGATTTGGAGGCCCTTCCAATTGGGGAGATTGGGAGTGTC
CCTAGCTTTGTGTTTTTATGGTGCGGCTCGGGAGGTCGGGTCACTGAGGA
CGCGTCGCAGGGGGCTTTGCACGTCGAAGACGGTCGACGCCTGCTTAGAA
AGTGGGGCTACCGACGCTGTGAAGAAGTCTGCTGGGTCAAAACAAATAAA
CAAGGTCCTCAGATCCAGCCTGACTTGCCAACATCTGCCACCAGCTTGTT
GGTCCGCGCCAAGGAGCATTGCCTGATGGGTATCAAAGGCTCGGTGCGTC
GCAACAGGGATGGACACATTATCCATTGCAACGTACACACGGACCTGGTG
GTAGCAGAGCAGCCGACAAACCCGCTCTCGACAGCCAAGCCCGAAGAAAT
GTACAAAATCATGGAGCAATTCTGCTTGGGTCGACGTCGTTTGGAGCTCT
TTGGTTGCCCGCGGAATATTCGGCCGGGGTGGGTGACGGTTGGCAAGGAC
TTGCCGCCCACGAATTACGACATGACTGCATATATAAATTGGATGAGCGT
GCCAGGCGTAAACCCGGACGGTACTCCTTGTGCTGGCCATTTGTTAGGGT
CTACACCTTTGATTGAAGACCTGCGGCCCAAGACGCCTCCTCGAGAGCAA
AGGGAAAGGGAGGCGCAAAAAGGGGGCGGTAGTGGTGTTCGAGGGGGAGG
GATAGAAGGGGGCTCTTCGCCCTTTCGACCTCGCAGTGGAAGTCTCCCTT
CCATGCGGCCTCAGTCAGGGCAGGCTTTGCCGCATCATCACCATCATTGC
CGTCATCAACATTTTGAGCGGGCGCAGCATTTTCACCAGCAGCAGATGCC
GCAACAGGCATACTTTCACCAGCAGCAGTACGAGCAATTCTACGACCACG
GGGAACAGCAATACCGTCAATGTCAACGCAATGATGAAGCGCTGCAAGGC
TTTTATTCTCCTACTATCGAGCAGCATCAACAGCACCAGCGCAAGCAGCA
ACAGTGCCAGCGGCAACAGAATCAGCAAGGCATGGTCCGTTTTCTCTACT
CCTCCCGTTCTTCGCCCCGGGGATCCATTCCGCATTCTTTCTTGCCTGCT
CCTCCCCCTTTCCCCGACTCCCAAGGATCTCTCTCCCCGCAAGATCTGCA
CTCGTCGTACAGCGAATGGGATTCACATACCTTTCCATCTGAATTAGGAC
ATGGTGGTGCGCGGGGACGCGGCCGAGACCGTCCGCCGCTCCAGCACCCA
TCTTATAATGTAGGAACAAAAAACCAAAGATAAACGTAAAGCATTTGAGG
ACGAAAAAGCACTTGCGATACTCATGAATACGTATCCGCAGCCATTGCTT
CGGTCCGACTTAGTCGCGCGAGACTCAAAAAGAGCAAAAGACTGTCTT back to topprotein sequence of jgi.p|Nanoce1779_2|538859 >mRNA_2569-protein ID=mRNA_2569-protein|Name=jgi.p|Nanoce1779_2|538859|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MGIKGSVRRNRDGHIIHCNVHTDLVVAEQPTNPLSTAKPEEMYKIMEQFC
LGRRRLELFGCPRNIRPGWVTVGKDLPPTNYDMTAYINWMSVPGVNPDGT
PCAGHLLGSTPLIEDLRPKTPPREQREREAQKGGGSGVRGGGIEGGSSPF
RPRSGSLPSMRPQSGQALPHHHHHCRHQHFERAQHFHQQQMPQQAYFHQQ
QYEQFYDHGEQQYRQCQRNDEALQGFYSPTIEQHQQHQRKQQQCQRQQNQ
QGMVRFLYSSRSSPRGSIPHSFLPAPPPFPDSQGSLSPQDLHSSYSEWDS
HTFPSELGHGGARGRGRDRPPLQHPSYNVGTKNQR* back to topmRNA from alignment at scaffold_5:676235..677843- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2569 ID=mRNA_2569|Name=jgi.p|Nanoce1779_2|538859|organism=Nannochloropsis oceanica|type=mRNA|length=1609bp|location=Sequence derived from alignment at scaffold_5:676235..677843- (Nannochloropsis oceanica)
ATCCAGGCCGACCTGAGGACGTTTGATTTGCGGAAATTGGGCACCAAATT
TGATCTGATTTACATTGATCCACCCTGGGAGGAGTACGCCCGTCGAGCGG
CACCCTTTGTGGTGGGAGGCAAGAAGAGTCCTAGGGGGTCGTCATCGTCG
TCAGCCTCTCCCTCGTCTTCTAGCACCACGGATGCAACATCATCGCAACT
TGATCAATTATGGCGGTATGAGGATTTGGAGGCCCTTCCAATTGGGGAGA
TTGGGAGTGTCCCTAGCTTTGTGTTTTTATGGTGCGGCTCGGGAGGTCGG
GTCACTGAGGACGCGTCGCAGGGGGCTTTGCACGTCGAAGACGGTCGACG
CCTGCTTAGAAAGTGGGGCTACCGACGCTGTGAAGAAGTCTGCTGGGTCA
AAACAAATAAACAAGGTCCTCAGATCCAGCCTGACTTGCCAACATCTGCC
ACCAGCTTGTTGGTCCGCGCCAAGGAGCATTGCCTGATGGGTATCAAAGG
CTCGGTGCGTCGCAACAGGGATGGACACATTATCCATTGCAACGTACACA
CGGACCTGGTGGTAGCAGAGCAGCCGACAAACCCGCTCTCGACAGCCAAG
CCCGAAGAAATGTACAAAATCATGGAGCAATTCTGCTTGGGTCGACGTCG
TTTGGAGCTCTTTGGTTGCCCGCGGAATATTCGGCCGGGGTGGGTGACGG
TTGGCAAGGACTTGCCGCCCACGAATTACGACATGACTGCATATATAAAT
TGGATGAGCGTGCCAGGCGTAAACCCGGACGGTACTCCTTGTGCTGGCCA
TTTGTTAGGGTCTACACCTTTGATTGAAGACCTGCGGCCCAAGACGCCTC
CTCGAGAGCAAAGGGAAAGGGAGGCGCAAAAAGGGGGCGGTAGTGGTGTT
CGAGGGGGAGGGATAGAAGGGGGCTCTTCGCCCTTTCGACCTCGCAGTGG
AAGTCTCCCTTCCATGCGGCCTCAGTCAGGGCAGGCTTTGCCGCATCATC
ACCATCATTGCCGTCATCAACATTTTGAGCGGGCGCAGCATTTTCACCAG
CAGCAGATGCCGCAACAGGCATACTTTCACCAGCAGCAGTACGAGCAATT
CTACGACCACGGGGAACAGCAATACCGTCAATGTCAACGCAATGATGAAG
CGCTGCAAGGCTTTTATTCTCCTACTATCGAGCAGCATCAACAGCACCAG
CGCAAGCAGCAACAGTGCCAGCGGCAACAGAATCAGCAAGGCATGGTCCG
TTTTCTCTACTCCTCCCGTTCTTCGCCCCGGGGATCCATTCCGCATTCTT
TCTTGCCTGCTCCTCCCCCTTTCCCCGACTCCCAAGGATCTCTCTCCCCG
CAAGATCTGCACTCGTCGTACAGCGAATGGGATTCACATACCTTTCCATC
TGAATTAGGACATGGTGGTGCGCGGGGACGCGGCCGAGACCGTCCGCCGC
TCCAGCACCCATCTTATAATGTAGGAACAAAAAACCAAAGATAAACGTAA
AGCATTTGAGGACGAAAAAGCACTTGCGATACTCATGAATACGTATCCGC
AGCCATTGCTTCGGTCCGACTTAGTCGCGCGAGACTCAAAAAGAGCAAAA
GACTGTCTT back to topCoding sequence (CDS) from alignment at scaffold_5:676235..677843- >mRNA_2569 ID=mRNA_2569|Name=jgi.p|Nanoce1779_2|538859|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_5:676235..677843- (Nannochloropsis oceanica)
ATGGGTATCAAAGGCTCGGTGCGTCGCAACAGGGATGGACACATTATCCA
TTGCAACGTACACACGGACCTGGTGGTAGCAGAGCAGCCGACAAACCCGC
TCTCGACAGCCAAGCCCGAAGAAATGTACAAAATCATGGAGCAATTCTGC
TTGGGTCGACGTCGTTTGGAGCTCTTTGGTTGCCCGCGGAATATTCGGCC
GGGGTGGGTGACGGTTGGCAAGGACTTGCCGCCCACGAATTACGACATGA
CTGCATATATAAATTGGATGAGCGTGCCAGGCGTAAACCCGGACGGTACT
CCTTGTGCTGGCCATTTGTTAGGGTCTACACCTTTGATTGAAGACCTGCG
GCCCAAGACGCCTCCTCGAGAGCAAAGGGAAAGGGAGGCGCAAAAAGGGG
GCGGTAGTGGTGTTCGAGGGGGAGGGATAGAAGGGGGCTCTTCGCCCTTT
CGACCTCGCAGTGGAAGTCTCCCTTCCATGCGGCCTCAGTCAGGGCAGGC
TTTGCCGCATCATCACCATCATTGCCGTCATCAACATTTTGAGCGGGCGC
AGCATTTTCACCAGCAGCAGATGCCGCAACAGGCATACTTTCACCAGCAG
CAGTACGAGCAATTCTACGACCACGGGGAACAGCAATACCGTCAATGTCA
ACGCAATGATGAAGCGCTGCAAGGCTTTTATTCTCCTACTATCGAGCAGC
ATCAACAGCACCAGCGCAAGCAGCAACAGTGCCAGCGGCAACAGAATCAG
CAAGGCATGGTCCGTTTTCTCTACTCCTCCCGTTCTTCGCCCCGGGGATC
CATTCCGCATTCTTTCTTGCCTGCTCCTCCCCCTTTCCCCGACTCCCAAG
GATCTCTCTCCCCGCAAGATCTGCACTCGTCGTACAGCGAATGGGATTCA
CATACCTTTCCATCTGAATTAGGACATGGTGGTGCGCGGGGACGCGGCCG
AGACCGTCCGCCGCTCCAGCACCCATCTTATAATGTAGGAACAAAAAACC
AAAGATAA back to top
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