jgi.p|Nanoce1779_2|580797, mRNA_2568 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580797
Unique Name	mRNA_2568
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1971
Alignment location	scaffold_5:673882..676234 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580883
Track	FilteredModels2
ProteinId	580797

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:673882..676234 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580797	gene_2568	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580797	mRNA_2568-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2568	CDS_2568	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:673882..676234+
coding sequence from alignment at scaffold_5:673882..676234+

mRNA sequence

>mRNA_2568 ID=mRNA_2568|Name=jgi.p|Nanoce1779_2|580797|organism=Nannochloropsis oceanica|type=mRNA|length=1971bp
AGCATGTTGGACGACATGTAGTGTGTTCATGGTTGAGAAGAAAGAAGAAC
AGGATATGTAAGCGGTGGTGGAACTCGAAGCTCGCGCCACTCAACAGAAA
GCGGAAGCCTCTGGCATGGTTACCTTGAAAGGCTGGCGCATTCACACAGC
TAAAGCATCACCTCATTCTCTCACCACCGTTCATTTTATGCGCTCTGTAG
TCACGGTTAAGAAGGCGCCGGGCACGATTTCCATTCTGACAGCAGCAAGC
AACACATCGACCTCCCGATTTCATCAACAAGGCAAGCGTTATGGCAAGCA
GTACGAGCCGCGTGCTCACGCAGCTGATGCGGCGTCAGGCTCCCAGTACC
ATCAGCAACAGCAGCAGACAGAGACTCTTGTCGTCGACTGCGGCAAATAC
TGGCGCGACCAAGTCTGAGAAATTCATGGATCTTGAGGATAAACACGGAG
CACACAACTACCACCCGTTACCTGTGGTGCTCTCCCGGGGCCAAGGCGTG
CATGTGTGGGATGTGGAAGGCAACCGGTATCTCGATTTTTTGTCCGCCTA
CTCCGCCGTGAACCAAGGGCATTGTCACCCCAAGATTGTCGACGCGCTCG
TGAAGCAAGCCAGCAAATTGACTTTAGCCTCTCGGGCATTTTATACGGAT
GCGTTGGGGGAGTACCAGCGGTTTGTGACGGGCTATTTTGGATATGATCG
TGTACTGCCCATGAATACCGGCGTTGAGGGCGGCGAGACGGCAGTGAAAC
TCGCCCGTCGTTGGGGCTACGAAGTGAAAGGCATCCCTACCGATCAAGCG
CAGATCGTCTTCGCTCGCGGTAACTTCTGGGGGAGAACCCTGGGTGCGAT
CTCTTCCTCTACTGATCCCTCCTCTCGAAAGGGTTTCGGGCCCTTTGTTC
CTGGCTTTGACCTGGTGGACTACGATGACCCGGATGCCTTGGAAGCCCTG
TTTGAGAAGGAGGCGGCGAGGATCGCGGGTTTTATGGTTGAACCGATTCA
GGGGGAGGCGGGAGTGGTGGTTCCGCAGGAGGGATACATGAAGAAGATCA
AAGCGATTTGCGATAAGTACAATGTGCTTTTGATTGCCGATGAGGTCCAG
ACGGGGTTGGGTAGAACGGGAAAGTTGCTCGCGTCGGAGTGGGATGAGAC
GAAGCCGGATATTTTGGTGCTGGGGAAGGCGTTGTCTGGCGGGGTGATGC
CTGTGTCGGCGGTGTTGGCAAGTGACGAAGTCATGCTCACCATTAAACCG
GGGGAGCACGGGTCGACATTTGGGGGGAACCCGCTCGCGTGTAAAGTTGC
AACGGCGGCTTTGGAAGTACTGAGGGATGAGAAGCTGGCGGATAATGCGA
TGGTGATGGGGGAGAGGTTTAGAGCGGGCTTGAGGCGGATCTCGAGTCGG
GGGTTGGTGGAGATCGTGAGGGGCAGGGGGCTGTTGAATGCCATGGTGAT
TGAGGACCGAAAGGGGGATGGAGGACCGGCATGGGACATATGTTTGGAGT
TAAAGAGGCATGGGTTGTTGGCAAAACCGACGCATGGGAATATCATTCGC
CTAGCCCCGCCACTAAGTATCAACGCTGGGCAAATCGATGAGGCTCTGGG
AATTGTTGAGGCGTCTTTGAAGAAGTTCATGCGTTAGGCAGCGAGGGAGG
GATGGAGGGAGAATATTGGGAAGGGCGACCAAGGGGAGCGAGATAGAAAG
AAGTGTATCAAAGTCCAGGAGTGTGGGATCTTCTGTATTTAATGATGATC
GTTCAGATTCGCGAAAGCGAAAAATAAGACCAATGTACCTTCACAAGAGA
GAAGGACAAGAAAAAGAAGCAAGCGAGAAAGTAGCAACTGCAAAAAATGG
CATCCGATTTAAGTGTCCTCGCATGGCACACATGTCCATTTGCAGAGGCA
GAAAGGACGGACACAACAGCATGGAAGACAAAATTGGTTCGTTTAAAATT
TGGAAAGAGACGACATGGCCA

protein sequence of jgi.p|Nanoce1779_2|580797

>mRNA_2568-protein ID=mRNA_2568-protein|Name=jgi.p|Nanoce1779_2|580797|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MASSTSRVLTQLMRRQAPSTISNSSRQRLLSSTAANTGATKSEKFMDLED
KHGAHNYHPLPVVLSRGQGVHVWDVEGNRYLDFLSAYSAVNQGHCHPKIV
DALVKQASKLTLASRAFYTDALGEYQRFVTGYFGYDRVLPMNTGVEGGET
AVKLARRWGYEVKGIPTDQAQIVFARGNFWGRTLGAISSSTDPSSRKGFG
PFVPGFDLVDYDDPDALEALFEKEAARIAGFMVEPIQGEAGVVVPQEGYM
KKIKAICDKYNVLLIADEVQTGLGRTGKLLASEWDETKPDILVLGKALSG
GVMPVSAVLASDEVMLTIKPGEHGSTFGGNPLACKVATAALEVLRDEKLA
DNAMVMGERFRAGLRRISSRGLVEIVRGRGLLNAMVIEDRKGDGGPAWDI
CLELKRHGLLAKPTHGNIIRLAPPLSINAGQIDEALGIVEASLKKFMR*

mRNA from alignment at scaffold_5:673882..676234+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2568 ID=mRNA_2568|Name=jgi.p|Nanoce1779_2|580797|organism=Nannochloropsis oceanica|type=mRNA|length=2353bp|location=Sequence derived from alignment at scaffold_5:673882..676234+ (Nannochloropsis oceanica)
AGCATGTTGGACGACATGTAGTGTGTTCATGGTTGAGAAGAAAGAAGAAC
AGGATATGTAAGCGGTGGTGGAACTCGAAGCTCGCGCCACTCAACAGAAA
GCGGAAGCCTCTGGCATGGTTACCTTGAAAGGCTGGCGCATTCACACAGC
TAAAGCATCACCTCATTCTCTCACCACCGTTCATTTTATGCGCTCTGTAG
TCACGGTTAAGAAGGCGCCGGGCACGATTTCCATTCTGACAGCAGCAAGC
AACACATCGACCTCCCGATTTCATCAACAAGGCAAGCGTTATGGCAAGCA
GTACGAGCCGCGTGCTCACGCAGCTGATGCGGCGTCAGGCTCCCAGTACC
ATCAGCAACAGCAGCAGACAGAGACTCTTGTCGTCGACTGCGGCAAATAC
TGGCGCGACCAAGTCTGAGAAATTCATGGATCTTGAGGTACGCGAGGAAG
ACGGCAGGAGGGGAGGGAAAGCTGGAGGATAGGTAGTATGGTGGGCCTTA
TCATACACAGGCCTAAAAAGCCTCCGTGATTCCTTTTCTTAGACGTAGGG
CCATGTTCATAATATGGGAAATGCGGTCGCGGTAATTAGTCCGCCTCATG
TTTGGATGTATGTAGTTCTAGAAGATGCCCGCCACCTTTTTCCGTCCCTC
GTCTCTCACCATCCTCTTTCCTTCCCCTTACTATTTTACCACCACCATCA
TTCTCAGGATAAACACGGAGCACACAACTACCACCCGTTACCTGTGGTGC
TCTCCCGGGGCCAAGGCGTGCATGTGTGGGATGTGGAAGGCAACCGGTAT
CTCGATTTTTTGTCCGCCTACTCCGCCGTGAACCAAGGGCATTGTCACCC
CAAGATTGTCGACGCGCTCGTGAAGCAAGCCAGCAAATTGACTTTAGCCT
CTCGGGCATTTTATACGGATGCGTTGGGGGAGTACCAGCGGTTTGTGACG
GGCTATTTTGGATATGATCGTGTACTGCCCATGAATACCGGCGTTGAGGG
CGGCGAGACGGCAGTGGTGCGTACATCTTGGGTAGTTTGGGGGCTTTCTA
CTCTTAATTCAAGTCGTTTTTTTTTTCTGTATTCAATCTGTGCTTCTTTC
ATCCCCCATCCCTTTCCCCATTGAACAGAAACTCGCCCGTCGTTGGGGCT
ACGAAGTGAAAGGCATCCCTACCGATCAAGCGCAGATCGTCTTCGCTCGC
GGTAACTTCTGGGGGAGAACCCTGGGTGCGATCTCTTCCTCTACTGATCC
CTCCTCTCGAAAGGGTTTCGGGCCCTTTGTTCCTGGCTTTGACCTGGTGG
ACTACGATGACCCGGATGCCTTGGAAGCCCTGTTTGAGAAGGAGGCGGCG
AGGATCGCGGGTTTTATGGTTGAACCGATTCAGGGGGAGGCGGGAGTGGT
GGTTCCGCAGGAGGGATACATGAAGAAGATCAAAGCGATTTGCGATAAGT
ACAATGTGCTTTTGATTGCCGATGAGGTCCAGACGGGGTTGGGTAGAACG
GGAAAGTTGCTCGCGTCGGAGTGGGATGAGACGAAGCCGGATATTTTGGT
GCTGGGGAAGGCGTTGTCTGGCGGGGTGATGCCTGTGTCGGCGGTGTTGG
CAAGTGACGAAGTCATGCTCACCATTAAACCGGGGGAGCACGGGTCGACA
TTTGGGGGGAACCCGCTCGCGTGTAAAGTTGCAACGGCGGCTTTGGAAGT
ACTGAGGGATGAGAAGCTGGCGGATAATGCGATGGTGATGGGGGAGAGGT
TTAGAGCGGGCTTGAGGCGGATCTCGAGTCGGGGGTTGGTGGAGATCGTG
AGGGGCAGGGGGCTGTTGAATGCCATGGTGATTGAGGACCGAAAGGGGGA
TGGAGGACCGGCATGGGACATATGTTTGGAGTTAAAGAGGCATGGGTTGT
TGGCAAAACCGACGCATGGGAATATCATTCGCCTAGCCCCGCCACTAAGT
ATCAACGCTGGGCAAATCGATGAGGCTCTGGGAATTGTTGAGGCGTCTTT
GAAGAAGTTCATGCGTTAGGCAGCGAGGGAGGGATGGAGGGAGAATATTG
GGAAGGGCGACCAAGGGGAGCGAGATAGAAAGAAGTGTATCAAAGTCCAG
GAGTGTGGGATCTTCTGTATTTAATGATGATCGTTCAGATTCGCGAAAGC
GAAAAATAAGACCAATGTACCTTCACAAGAGAGAAGGACAAGAAAAAGAA
GCAAGCGAGAAAGTAGCAACTGCAAAAAATGGCATCCGATTTAAGTGTCC
TCGCATGGCACACATGTCCATTTGCAGAGGCAGAAAGGACGGACACAACA
GCATGGAAGACAAAATTGGTTCGTTTAAAATTTGGAAAGAGACGACATGG
CCA

Coding sequence (CDS) from alignment at scaffold_5:673882..676234+

>mRNA_2568 ID=mRNA_2568|Name=jgi.p|Nanoce1779_2|580797|organism=Nannochloropsis oceanica|type=CDS|length=4041bp|location=Sequence derived from alignment at scaffold_5:673882..676234+ (Nannochloropsis oceanica)
ATGGCAAGCAGTACGAGCCGCGTGCTCACGCAGCTGATGCGGCGTCAGGC
TCCCAGTACCATCAGCAACAGCAGCAGACAGAGACTCTTGTCGTCGACTG
CGGCAAATACTGGCGCGACCAAGTCTGAGAAATTCATGGATCTTGAGGAT
AAACACGGAGCACACAACTACCACCCGTTACCTGTGGTGCTCTCCCGGGG
CCAAGGCGTGCATGTGTGGGATGTGGAAGGCAACCGGTATCTCGATTTTT
TGTCCGCCTACTCCGCCGTGAACCAAGGGCATTGTCACCCCAAGATTGTC
GACGCGCTCGTGAAGCAAGCCAGCAAATTGACTTTAGCCTCTCGGGCATT
TTATACGGATGCGTTGGGGGAGTACCAGCGGTTTGTGACGGGCTATTTTG
GATATGATCGTGTACTGCCCATGAATACCGGCGTTGAGGGCGGCGAGACG
GCAGTGAAACTCGCCCGTCGTTGGGGCTACGAAGTGAAAGGCATCCCTAC
CGATCAAGCGCAGATCGTCTTCGCTCGCGGTAACTTCTGGGGGAGAACCC
TGGGTGCGATCTCTTCCTCTACTGATCCCTCCTCTCGAAAGGGTTTCGGG
CCCTTTGTTCCTGGCTTTGACCTGGTGGACTACGATGACCCGGATGCCTT
GGAAGCCCTGTTTGAGAAGGAGGCGGCGAGGATCGCGGGTTTTATGGTTG
AACCGATTCAGGGGGAGGCGGGAGTGGTGGTTCCGCAGGAGGGATACATG
AAGAAGATCAAAGCGATTTGCGATAAGTACAATGTGCTTTTGATTGCCGA
TGAGGTCCAGACGGGGTTGGGTAGAACGGGAAAGTTGCTCGCGTCGGAGT
GGGATGAGACGAAGCCGGATATTTTGGTGCTGGGGAAGGCGTTGTCTGGC
GGGGTGATGCCTGTGTCGGCGGTGTTGGCAAGTGACGAAGTCATGCTCAC
CATTAAACCGGGGGAGCACGGGTCGACATTTGGGGGGAACCCGCTCGCGT
GTAAAGTTGCAACGGCGGCTTTGGAAGTACTGAGGGATGAGAAGCTGGCG
GATAATGCGATGGTGATGGGGGAGAGGTTTAGAGCGGGCTTGAGGCGGAT
CTCGAGTCGGGGGTTGGTGGAGATCGTGAGGGGCAGGGGGCTGTTGAATG
CCATGGTGATTGAGGACCGAAAGGGGGATGGAGGACCGGCATGGGACATA
TGTTTGGAGTTAAAGAGGCATGGGTTGTTGGCAAAACCGACGCATGGGAA
TATCATTCGCCTAGCCCCGCCACTAAGTATCAACGCTGGGCAAATCGATG
AGGCTCTGGGAATTGTTGAGGCGTCTTTGAAGAAGTTCATGCGTTAGATG
GCAAGCAGTACGAGCCGCGTGCTCACGCAGCTGATGCGGCGTCAGGCTCC
CAGTACCATCAGCAACAGCAGCAGACAGAGACTCTTGTCGTCGACTGCGG
CAAATACTGGCGCGACCAAGTCTGAGAAATTCATGGATCTTGAGGATAAA
CACGGAGCACACAACTACCACCCGTTACCTGTGGTGCTCTCCCGGGGCCA
AGGCGTGCATGTGTGGGATGTGGAAGGCAACCGGTATCTCGATTTTTTGT
CCGCCTACTCCGCCGTGAACCAAGGGCATTGTCACCCCAAGATTGTCGAC
GCGCTCGTGAAGCAAGCCAGCAAATTGACTTTAGCCTCTCGGGCATTTTA
TACGGATGCGTTGGGGGAGTACCAGCGGTTTGTGACGGGCTATTTTGGAT
ATGATCGTGTACTGCCCATGAATACCGGCGTTGAGGGCGGCGAGACGGCA
GTGAAACTCGCCCGTCGTTGGGGCTACGAAGTGAAAGGCATCCCTACCGA
TCAAGCGCAGATCGTCTTCGCTCGCGGTAACTTCTGGGGGAGAACCCTGG
GTGCGATCTCTTCCTCTACTGATCCCTCCTCTCGAAAGGGTTTCGGGCCC
TTTGTTCCTGGCTTTGACCTGGTGGACTACGATGACCCGGATGCCTTGGA
AGCCCTGTTTGAGAAGGAGGCGGCGAGGATCGCGGGTTTTATGGTTGAAC
CGATTCAGGGGGAGGCGGGAGTGGTGGTTCCGCAGGAGGGATACATGAAG
AAGATCAAAGCGATTTGCGATAAGTACAATGTGCTTTTGATTGCCGATGA
GGTCCAGACGGGGTTGGGTAGAACGGGAAAGTTGCTCGCGTCGGAGTGGG
ATGAGACGAAGCCGGATATTTTGGTGCTGGGGAAGGCGTTGTCTGGCGGG
GTGATGCCTGTGTCGGCGGTGTTGGCAAGTGACGAAGTCATGCTCACCAT
TAAACCGGGGGAGCACGGGTCGACATTTGGGGGGAACCCGCTCGCGTGTA
AAGTTGCAACGGCGGCTTTGGAAGTACTGAGGGATGAGAAGCTGGCGGAT
AATGCGATGGTGATGGGGGAGAGGTTTAGAGCGGGCTTGAGGCGGATCTC
GAGTCGGGGGTTGGTGGAGATCGTGAGGGGCAGGGGGCTGTTGAATGCCA
TGGTGATTGAGGACCGAAAGGGGGATGGAGGACCGGCATGGGACATATGT
TTGGAGTTAAAGAGGCATGGGTTGTTGGCAAAACCGACGCATGGGAATAT
CATTCGCCTAGCCCCGCCACTAAGTATCAACGCTGGGCAAATCGATGAGG
CTCTGGGAATTGTTGAGGCGTCTTTGAAGAAGTTCATGCGTTAGATGGCA
AGCAGTACGAGCCGCGTGCTCACGCAGCTGATGCGGCGTCAGGCTCCCAG
TACCATCAGCAACAGCAGCAGACAGAGACTCTTGTCGTCGACTGCGGCAA
ATACTGGCGCGACCAAGTCTGAGAAATTCATGGATCTTGAGGATAAACAC
GGAGCACACAACTACCACCCGTTACCTGTGGTGCTCTCCCGGGGCCAAGG
CGTGCATGTGTGGGATGTGGAAGGCAACCGGTATCTCGATTTTTTGTCCG
CCTACTCCGCCGTGAACCAAGGGCATTGTCACCCCAAGATTGTCGACGCG
CTCGTGAAGCAAGCCAGCAAATTGACTTTAGCCTCTCGGGCATTTTATAC
GGATGCGTTGGGGGAGTACCAGCGGTTTGTGACGGGCTATTTTGGATATG
ATCGTGTACTGCCCATGAATACCGGCGTTGAGGGCGGCGAGACGGCAGTG
AAACTCGCCCGTCGTTGGGGCTACGAAGTGAAAGGCATCCCTACCGATCA
AGCGCAGATCGTCTTCGCTCGCGGTAACTTCTGGGGGAGAACCCTGGGTG
CGATCTCTTCCTCTACTGATCCCTCCTCTCGAAAGGGTTTCGGGCCCTTT
GTTCCTGGCTTTGACCTGGTGGACTACGATGACCCGGATGCCTTGGAAGC
CCTGTTTGAGAAGGAGGCGGCGAGGATCGCGGGTTTTATGGTTGAACCGA
TTCAGGGGGAGGCGGGAGTGGTGGTTCCGCAGGAGGGATACATGAAGAAG
ATCAAAGCGATTTGCGATAAGTACAATGTGCTTTTGATTGCCGATGAGGT
CCAGACGGGGTTGGGTAGAACGGGAAAGTTGCTCGCGTCGGAGTGGGATG
AGACGAAGCCGGATATTTTGGTGCTGGGGAAGGCGTTGTCTGGCGGGGTG
ATGCCTGTGTCGGCGGTGTTGGCAAGTGACGAAGTCATGCTCACCATTAA
ACCGGGGGAGCACGGGTCGACATTTGGGGGGAACCCGCTCGCGTGTAAAG
TTGCAACGGCGGCTTTGGAAGTACTGAGGGATGAGAAGCTGGCGGATAAT
GCGATGGTGATGGGGGAGAGGTTTAGAGCGGGCTTGAGGCGGATCTCGAG
TCGGGGGTTGGTGGAGATCGTGAGGGGCAGGGGGCTGTTGAATGCCATGG
TGATTGAGGACCGAAAGGGGGATGGAGGACCGGCATGGGACATATGTTTG
GAGTTAAAGAGGCATGGGTTGTTGGCAAAACCGACGCATGGGAATATCAT
TCGCCTAGCCCCGCCACTAAGTATCAACGCTGGGCAAATCGATGAGGCTC
TGGGAATTGTTGAGGCGTCTTTGAAGAAGTTCATGCGTTAG

Synonyms

Publications