jgi.p|Nanoce1779_2|580795, mRNA_2567 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580795
Unique NamemRNA_2567
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1343
Alignment locationscaffold_5:671620..673706 -

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Properties
Property NameValue
TranscriptId580881
TrackFilteredModels2
ProteinId580795
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:671620..673706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580795gene_2567Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580795mRNA_2567-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2567CDS_2567Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2567 ID=mRNA_2567|Name=jgi.p|Nanoce1779_2|580795|organism=Nannochloropsis oceanica|type=mRNA|length=1343bp
AGGGCACCGTCTTCATTGTTTCTCCGCCGATTTGTTGCTACACAAAGGCC
CTGTCAAGCCGCACCCGCTCCAGTAGAGAAGGCAGATCAGTAGACCTCCC
GGTCACCATCACTTCGTCACAAACTCCACCCCCGACCGCTTGAGCCTATT
ACCGAGTTATAGCGTGCAGTATCAGAAAAAAGGAGCCTTCTCGATCAATT
TCATACTTTTCACCAGCCATGTCGATGTCTAAGAGCAGCAAGATGCTCAA
CTACATCAATTATCGGATGCGGGTCACCATTCAAGACAACCGCACTTTAG
TCGGGACCTTTATGGCTTTCGACCGACACATGAATCTGGTGTTGGGCGAC
TGTGAAGAGTATCGCAAAGTCAAGAGCAAAAAAGGCAGTGCTTCCGGCGG
CCCCGCGGCGGGGATTGTTGAGGAGAAAGAGGAGAAACGCATGTTGGGTT
TGGTCTTGTTACGAGGAGAGAACGTTGTGTCTTTGACGGTGGAAGGGCCG
CCACCGCCGGATGAGGAGGCGAAAGCCACGCCGGGGGGGCCCGGGATTGG
GCGGGCGGCCGGAAGAGGGATTGCGGTGGGCGCGCCTGTGATGGGAGCAC
CAGTGGGCTTGGCGGGCCCCGTGAGGGGGATTGGCGGACCAGCGCAGTCG
TTGATGACACCTGCGGGAGGGCCTCAAGGCTTCCCCCCCCGCGGCCCTTC
GCCACCAGGGATGGGTATGGGCTATCCCCCTCCTCGTGGCCCCCCTCCTC
CGGGTATGGGGGGTGGCATGCCGCCAGGCTATCCCCCCCAAGGACAGGGG
CCGCCTCCCGGTGGCTTTCCCCCTGGCCCTCCTCCTCGCGGGTTTCCGCC
TGGGATGCCCCCGAGGCCGTTGCCGCCCAGGTAGAGGGGAGGGAGGGAGG
ATGAAGGATGTCCGATGGCGCTATGAGGGAAAGGATGAAGGCAACAACGA
GAAGCAAAAAGGATAAGAATATTGAGGCGTGAAAAGGGAAACACATTCGA
AAAAGCACGGCATTATCGACAGCAAACATTTACAACTTATTTATTCGCTG
ACCGTTTTTACAAAGTATGTCATATTCATAATTATTGAGTTCGCGTCACT
GAAGGTCTGTGCTATCATCAAAATAAATGCTCATTAAAGGTTGCACCTTG
GATTCTATTATATTCACATAACAACTCCTTGGTCCCCTTTTGGCGCCATT
ATATCTACCTGCAAATCAGCATCTATTTCTCTTTTTCCCCCCTCCTCTCC
CAAACAAAAAATACTCCCAACTATCCTCTGTTCTTCCCTCAGGCTCACCC
CCCTCCGCTGCTCCTCCCCCCAGACCTCAAGGTTATCAACCTC
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protein sequence of jgi.p|Nanoce1779_2|580795

>mRNA_2567-protein ID=mRNA_2567-protein|Name=jgi.p|Nanoce1779_2|580795|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRK
VKSKKGSASGGPAAGIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEE
AKATPGGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTPAG
GPQGFPPRGPSPPGMGMGYPPPRGPPPPGMGGGMPPGYPPQGQGPPPGGF
PPGPPPRGFPPGMPPRPLPPR*
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mRNA from alignment at scaffold_5:671620..673706-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2567 ID=mRNA_2567|Name=jgi.p|Nanoce1779_2|580795|organism=Nannochloropsis oceanica|type=mRNA|length=2087bp|location=Sequence derived from alignment at scaffold_5:671620..673706- (Nannochloropsis oceanica)
AGGGCACCGTCTTCATTGTTTCTCCGCCGATTTGTTGCTACACAAAGGCC
CTGTCAAGCCGCACCCGCTCCAGTAGAGAAGGCAGATCAGTAGACCTCCC
GGTCACCATCACTTCGTCACAAACTCCACCCCCGACCGCTTGAGCCTATT
ACCGAGTTATAGCGTGCAGTATCAGAAAAAAGGAGCCTTCTCGATCAATT
TCATACTTTTCACCAGCCATGGTACGTATTTTGGGTGCGGTGTTGGTTGG
CTCCCCTCACTCGTTCTCCACGCCGTGCGTGCCTGTAGTGATCCCAATTA
TCCCCCCCTCTTCATGTTGCACTCGTTGTCTGTTTCATGCGTTTAATTGC
CATCACTCCCCATCAACCCATTTTCGACACTCCAAATCATCATCAATCAC
TCTATCCTTCTACCTTGCCTTCTCCCCCACCCCCCGAATCTCTCCCCTCC
CCTCCACAGTCGATGTCTAAGAGCAGCAAGATGCTCAACTACATCAATTA
TCGGATGCGGGTCACCATTCAAGACAACCGCACTTTAGTCGGGACCTTTA
TGGCTTTCGACCGACACATGAATCTGGTGTTGGGCGACTGTGAAGAGTAT
CGCAAAGTCAAGAGCAAAAAAGGCAGTGCTTCCGGCGGCCCCGCGGCGGG
GATTGTTGAGGAGAAAGAGGAGAAACGCATGTTGGGTTTGGTCTTGTTAC
GAGGAGAGAACGTTGTGTCTTTGACGGTGGAAGGGCCGCCACCGCCGGAT
GAGGAGGCGAAAGCCACGCCGGGGGGGCCCGGGATTGGGCGGGCGGCCGG
AAGAGGGATTGCGGTGGGCGCGCCTGTGATGGGAGCACCAGTGGGCTTGG
CGGGCCCCGTGAGGGGGATTGGCGGACCAGCGCAGTCGTTGATGACACCT
GCGGGAGGTGCGTGAAAGAGGGGGGGGTTGGAGAGACATTTGGTGGGGGA
TGGCAAAGTTTGGTGGTATCGGTGCGCTCAAACGCGCGAGTATGTGGCTG
TGTCTGTGGCTGTGTCTGTGTCTGCGTCTGTCGTCTCTTTCTGCGATTTT
TCTTTTTTTGATATATGTCTGCCTCTATATGGTGGTATGTGCACATCCGT
GTGGAAGGCCACACCTATAGAGGGGCGAGACTTTCGACGGGACGCCGGGT
GCTCACTGGGCACTACGATGGGGCTCCCATCAGTTCTACTCGCCCACATT
CATGCACCGCTTGCCCACGCTTCGTCTTCACGCGCGGGCTCTTTCTAATG
CCCTGAATGCGTTAATTTTGATTGGGCCACACAAAGTATTTCCTCGCTGT
AATTTATCAGTGATAATTCCATTCGCTCCTCCTTTTAAATCATTCCCTCT
TGATGCTCATCCTGTAATCACCCCGTTGTCCATCCTTTCTTCCCCTTCTC
CTATTCAAACCAGGGCCTCAAGGCTTCCCCCCCCGCGGCCCTTCGCCACC
AGGGATGGGTATGGGCTATCCCCCTCCTCGTGGCCCCCCTCCTCCGGGTA
TGGGGGGTGGCATGCCGCCAGGCTATCCCCCCCAAGGACAGGGGCCGCCT
CCCGGTGGCTTTCCCCCTGGCCCTCCTCCTCGCGGGTTTCCGCCTGGGAT
GCCCCCGAGGCCGTTGCCGCCCAGGTAGAGGGGAGGGAGGGAGGATGAAG
GATGTCCGATGGCGCTATGAGGGAAAGGATGAAGGCAACAACGAGAAGCA
AAAAGGATAAGAATATTGAGGCGTGAAAAGGGAAACACATTCGAAAAAGC
ACGGCATTATCGACAGCAAACATTTACAACTTATTTATTCGCTGACCGTT
TTTACAAAGTATGTCATATTCATAATTATTGAGTTCGCGTCACTGAAGGT
CTGTGCTATCATCAAAATAAATGCTCATTAAAGGTTGCACCTTGGATTCT
ATTATATTCACATAACAACTCCTTGGTCCCCTTTTGGCGCCATTATATCT
ACCTGCAAATCAGCATCTATTTCTCTTTTTCCCCCCTCCTCTCCCAAACA
AAAAATACTCCCAACTATCCTCTGTTCTTCCCTCAGGCTCACCCCCCTCC
GCTGCTCCTCCCCCCAGACCTCAAGGTTATCAACCTC
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Coding sequence (CDS) from alignment at scaffold_5:671620..673706-

>mRNA_2567 ID=mRNA_2567|Name=jgi.p|Nanoce1779_2|580795|organism=Nannochloropsis oceanica|type=CDS|length=1998bp|location=Sequence derived from alignment at scaffold_5:671620..673706- (Nannochloropsis oceanica)
GGCCTCAAGGCTTCCCCCCCCGCGGCCCTTCGCCACCAGGGATGGGTATG
GGCTATCCCCCTCCTCGTGGCCCCCCTCCTCCGGGTATGGGGGGTGGCAT
GCCGCCAGGCTATCCCCCCCAAGGACAGGGGCCGCCTCCCGGTGGCTTTC
CCCCTGGCCCTCCTCCTCGCGGGTTTCCGCCTGGGATGCCCCCGAGGCCG
TTGCCGCCCAGGTAGTCGATGTCTAAGAGCAGCAAGATGCTCAACTACAT
CAATTATCGGATGCGGGTCACCATTCAAGACAACCGCACTTTAGTCGGGA
CCTTTATGGCTTTCGACCGACACATGAATCTGGTGTTGGGCGACTGTGAA
GAGTATCGCAAAGTCAAGAGCAAAAAAGGCAGTGCTTCCGGCGGCCCCGC
GGCGGGGATTGTTGAGGAGAAAGAGGAGAAACGCATGTTGGGTTTGGTCT
TGTTACGAGGAGAGAACGTTGTGTCTTTGACGGTGGAAGGGCCGCCACCG
CCGGATGAGGAGGCGAAAGCCACGCCGGGGGGGCCCGGGATTGGGCGGGC
GGCCGGAAGAGGGATTGCGGTGGGCGCGCCTGTGATGGGAGCACCAGTGG
GCTTGGCGGGCCCCGTGAGGGGGATTGGCGGACCAGCGCAGTCGTTGATG
ACACCTGCGGGAGATGGGCCTCAAGGCTTCCCCCCCCGCGGCCCTTCGCC
ACCAGGGATGGGTATGGGCTATCCCCCTCCTCGTGGCCCCCCTCCTCCGG
GTATGGGGGGTGGCATGCCGCCAGGCTATCCCCCCCAAGGACAGGGGCCG
CCTCCCGGTGGCTTTCCCCCTGGCCCTCCTCCTCGCGGGTTTCCGCCTGG
GATGCCCCCGAGGCCGTTGCCGCCCAGGTAGTCGATGTCTAAGAGCAGCA
AGATGCTCAACTACATCAATTATCGGATGCGGGTCACCATTCAAGACAAC
CGCACTTTAGTCGGGACCTTTATGGCTTTCGACCGACACATGAATCTGGT
GTTGGGCGACTGTGAAGAGTATCGCAAAGTCAAGAGCAAAAAAGGCAGTG
CTTCCGGCGGCCCCGCGGCGGGGATTGTTGAGGAGAAAGAGGAGAAACGC
ATGTTGGGTTTGGTCTTGTTACGAGGAGAGAACGTTGTGTCTTTGACGGT
GGAAGGGCCGCCACCGCCGGATGAGGAGGCGAAAGCCACGCCGGGGGGGC
CCGGGATTGGGCGGGCGGCCGGAAGAGGGATTGCGGTGGGCGCGCCTGTG
ATGGGAGCACCAGTGGGCTTGGCGGGCCCCGTGAGGGGGATTGGCGGACC
AGCGCAGTCGTTGATGACACCTGCGGGAGATGGGCCTCAAGGCTTCCCCC
CCCGCGGCCCTTCGCCACCAGGGATGGGTATGGGCTATCCCCCTCCTCGT
GGCCCCCCTCCTCCGGGTATGGGGGGTGGCATGCCGCCAGGCTATCCCCC
CCAAGGACAGGGGCCGCCTCCCGGTGGCTTTCCCCCTGGCCCTCCTCCTC
GCGGGTTTCCGCCTGGGATGCCCCCGAGGCCGTTGCCGCCCAGGTAGTCG
ATGTCTAAGAGCAGCAAGATGCTCAACTACATCAATTATCGGATGCGGGT
CACCATTCAAGACAACCGCACTTTAGTCGGGACCTTTATGGCTTTCGACC
GACACATGAATCTGGTGTTGGGCGACTGTGAAGAGTATCGCAAAGTCAAG
AGCAAAAAAGGCAGTGCTTCCGGCGGCCCCGCGGCGGGGATTGTTGAGGA
GAAAGAGGAGAAACGCATGTTGGGTTTGGTCTTGTTACGAGGAGAGAACG
TTGTGTCTTTGACGGTGGAAGGGCCGCCACCGCCGGATGAGGAGGCGAAA
GCCACGCCGGGGGGGCCCGGGATTGGGCGGGCGGCCGGAAGAGGGATTGC
GGTGGGCGCGCCTGTGATGGGAGCACCAGTGGGCTTGGCGGGCCCCGTGA
GGGGGATTGGCGGACCAGCGCAGTCGTTGATGACACCTGCGGGAGATG
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Synonyms
Publications