jgi.p|Nanoce1779_2|552392, mRNA_2566 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|552392
Unique Name	mRNA_2566
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3532
Alignment location	scaffold_5:669290..672821 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	552478
Track	FilteredModels2
ProteinId	552392

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:669290..672821 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|552392	gene_2566	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|552392	mRNA_2566-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2566	CDS_2566	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:669290..672821+
coding sequence from alignment at scaffold_5:669290..672821+

mRNA sequence

>mRNA_2566 ID=mRNA_2566|Name=jgi.p|Nanoce1779_2|552392|organism=Nannochloropsis oceanica|type=mRNA|length=3532bp
CAGCGATGAGGCAGCCCGAATTAGGCAAGTATGCCTTTCAGCCTGTGCGT
GGCGGTGCGAACAAGGTGACGGACTACATAGTTAGAAAGTGGATGAGCAT
GGTGGTGATCTGGCTGGGCTATGGTGGTGGGCCTAAGCGTGAAGGAAAAA
AAAAAAGGTGGACTTGCCCTCGGGTTCCCTGGGCCCGCGCGGGGCCCTGG
GGTTGCGTGACAGCCCGCTAGCACGATGGCAGCAGTTGGGGCCTCAGTTC
CCCTACCACGGTGTGTTGTACCGCCGACGCCACGGCCCACGGTAACCACC
TCTCTCCAAATATGGGACACAGACAACCAATTAACACAGAGAATTTGCGT
CAGCAAGTCGAAATGGACCGTGAGCTCTTTCTGAGACACATCATCGATCT
CATCGACCTCCCAACCCTCATCTCACACTCCACTCCACTTCATTATGCTA
TCCAAGCAATGTCACTCACTTCAGGTGTCACGACTTTTGTCGATCAAGGG
GATTGTATGTTAAGGCTTTAAATACGCCCCCCATTTCTCCCCACCTCACC
TTTTCCAATATACAGGACACACTAGGTAGGGTTAAAGTCATAAATGGTAG
CGTTTCGAGCTCGGTCAAAGTGGAAGCGGGGTTGGCGGCGCCTGAGGCAT
GATGGCACAACATCAGCGGGAAGCACTGCAGATGAGGACGCGTTTACTTT
TTATTGGCTTTTCATTCAGGCGCGTCTCAACTCGCCCGAATGGCCTTTAC
CCTCTCCCTCACGCCCCATCTCCATCCTTGGAGGCATTTTCGGAGAAGTG
AGGCAGCCGCTCTTCGTACTGGCACCGATGGTCCTCCAATCAGAGAGGGC
CTTCCGGCTGCTCGTGCAACGATATGGTGTCAAGCTGTGCTTTTCGCCAA
TGCTCCTCGCCCGCAATGTCCTTAATCACGCAGAAACAGGTAAGGTCGAA
TGCCCTTATGCCCGAGAGCTTCTTCGACCCTGCCCTCAAGACAAGCCAGT
TATGGCTCAGTTAGCCGGTGCGGACCCACAACTGATTCTAGCAGCTGCCC
GTAGACTATGGGAAGGGGGAAATATAGCAGGTATCGATCTTAATTTTGGT
TGCCCACAGAAATGTGCTGAGATCGGAATGTATGGTGCATACCTTGTTCA
GAAGGATTCTGACACCGCTGTGGCCATGGTTAGGATTTTGGTTAAGGAAT
TAGGCGTGCCCGTTTCGTGTAAGTTGCGTTGTATAGGAGGAGTGGAGGCA
ACCGTTTCTTTTGCGCAGCGTTTGGAGGAGGCAGGGGCAGCGCTGTTGAC
CGTGCATGGTCGGACGCCACATCAGAGAGATCATCAGGCGATAAGTGATT
TCGATGTAATCCGTGCGGTGCGAGAAGCGGTCTCGATCCCTGTCTTGGCG
AATGGGAATTGTCGTACACGGCAGGATGCGGAATGTGCGTTGCGTTATAC
TGGGTGTGACGGCATGATGAGTGCGGTGGGGCTCCTTCGAAATCCGAGAC
TTTTTGCTGCTCCTGCTGATACAATTGCTCCAGCTGACGCTGCTCTCACA
TCAAGCGGCACCCTCACTAACCCCAGGGTCGCTTTTGCCTGTGCCTGGGA
ATACCTCGAGCTCGCTGAAGCTTTCCCACCGCCCGAGCCCCGTTGTGTGC
GTGATCATCTCCAGGTCATACTACAGGGAGTGTTGCAATTTAAAGAGGTA
GCTCTGTGGAATCTGTTGGGGAGTGATCGCATGGTTTTGAACAAACAATT
CAGAGAGTTGTTGCGACTTGGCGCGGTTCTCTGCGCGAGTCGCTCGGAGG
AGGGAATGAGGGTAGGAAAAGAAGGAGAAGGAGGAGTGTTGACGTTGCAG
GAGATTAAGTCATTGCATAGGCGGGGGGATAAAAACGAGGAGGAGCAACA
GGAAGGGGACGGGAAAGGTTTTGTTTGGGGTGGATTGTTCGAAGAGGAGG
GGGAGGAGGAAAATGAGGAGAAGGAGGAGAAGGAGGAGAAAGATGACCCG
AAGGATGAGAATCTAGTCTATGCGCTTGAGGTGCAAGTGCCATGGTCCCG
TCGGCTGCTGGATGGAAGCAAGACTGTTGAGACTCGTGGGTATGACTTGC
CTTTACATTTGTGGGGACATCCTATTCTCTTGCTTGAGTCTCCTGCTGGA
GGAGGTTTGGCCAAGCACGGTCGAGATGCAGGAAAGACGGTGGGTGTTGT
CGTCTTTGGGAGGAGTAAGAGATACCGTTCGAGGGCAGAATGGGTGGATG
ACGCGGACAAGCATGGGGTTGATCCGCAGGCAGGGCGGGAAGAATTTGGC
TGGTGTGAGCACAAGACAAAGTGGGGGTGGGAGGTTGATAACCTTGAGGT
CTGGGGGGAGGAGCAGCGGAGGGGGGTGAGCCTGAGGGAAGAACAGAGGA
TAGTTGGGAGTATTTTTTGTTTGGGAGAGGAGGGGGGAAAAAGAGAAATA
GATGCTGATTTGCAGGTAGATATAATGGCGCCAAAAGGGGACCAAGGAGT
TGTTATGTGAATATAATAGAATCCAAGGTGCAACCTTTAATGAGCATTTA
TTTTGATGATAGCACAGACCTTCAGTGACGCGAACTCAATAATTATGAAT
ATGACATACTTTGTAAAAACGGTCAGCGAATAAATAAGTTGTAAATGTTT
GCTGTCGATAATGCCGTGCTTTTTCGAATGTGTTTCCCTTTTCACGCCTC
AATATTCTTATCCTTTTTGCTTCTCGTTGTTGCCTTCATCCTTTCCCTCA
TAGCGCCATCGGACATCCTTCATCCTCCCTCCCTCCCCTCTACCTGGGCG
GCAACGGCCTCGGGGGCATCCCAGGCGGAAACCCGCGAGGAGGAGGGCCA
GGGGGAAAGCCACCGGGAGGCGGCCCCTGTCCTTGGGGGGGATAGCCTGG
CGGCATGCCACCCCCCATACCCGGAGGAGGGGGGCCACGAGGAGGGGGAT
AGCCCATACCCATCCCTGGTGGCGAAGGGCCGCGGGGGGGGAAGCCTTGA
GGCCCTGGTTTGAATAGGAGAAGGGGAAGAAAGGATGGACAACGGGGTGA
TTACAGGATGAGCATCAAGAGGGAATGATTTAAAAGGAGGAGCGAATGGA
ATTATCACTGATAAATTACAGCGAGGAAATACTTTGTGTGGCCCAATCAA
AATTAACGCATTCAGGGCATTAGAAAGAGCCCGCGCGTGAAGACGAAGCG
TGGGCAAGCGGTGCATGAATGTGGGCGAGTAGAACTGATGGGAGCCCCAT
CGTAGTGCCCAGTGAGCACCCGGCGTCCCGTCGAAAGTCTCGCCCCTCTA
TAGGTGTGGCCTTCCACACGGATGTGCACATACCACCATATAGAGGCAGA
CATATATCAAAAAAAGAAAAATCGCAGAAAGAGACGACAGACGCAGACAC
AGACACAGCCACAGACACAGCCACATACTCGCGCGTTTGAGCGCACCGAT
ACCACCAAACTTTGCCATCCCCCACCAAATGTCTCTCCAACCCCCCCCTC
TTTCACGCACCTCCCGCAGGTGTCATCAACGA

protein sequence of jgi.p|Nanoce1779_2|552392

>mRNA_2566-protein ID=mRNA_2566-protein|Name=jgi.p|Nanoce1779_2|552392|organism=Nannochloropsis oceanica|type=polypeptide|length=639bp
MVAFRARSKWKRGWRRLRHDGTTSAGSTADEDAFTFYWLFIQARLNSPEW
PLPSPSRPISILGGIFGEVRQPLFVLAPMVLQSERAFRLLVQRYGVKLCF
SPMLLARNVLNHAETGKVECPYARELLRPCPQDKPVMAQLAGADPQLILA
AARRLWEGGNIAGIDLNFGCPQKCAEIGMYGAYLVQKDSDTAVAMVRILV
KELGVPVSCKLRCIGGVEATVSFAQRLEEAGAALLTVHGRTPHQRDHQAI
SDFDVIRAVREAVSIPVLANGNCRTRQDAECALRYTGCDGMMSAVGLLRN
PRLFAAPADTIAPADAALTSSGTLTNPRVAFACAWEYLELAEAFPPPEPR
CVRDHLQVILQGVLQFKEVALWNLLGSDRMVLNKQFRELLRLGAVLCASR
SEEGMRVGKEGEGGVLTLQEIKSLHRRGDKNEEEQQEGDGKGFVWGGLFE
EEGEEENEEKEEKEEKDDPKDENLVYALEVQVPWSRRLLDGSKTVETRGY
DLPLHLWGHPILLLESPAGGGLAKHGRDAGKTVGVVVFGRSKRYRSRAEW
VDDADKHGVDPQAGREEFGWCEHKTKWGWEVDNLEVWGEEQRRGVSLREE
QRIVGSIFCLGEEGGKREIDADLQVDIMAPKGDQGVVM*

mRNA from alignment at scaffold_5:669290..672821+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2566 ID=mRNA_2566|Name=jgi.p|Nanoce1779_2|552392|organism=Nannochloropsis oceanica|type=mRNA|length=3532bp|location=Sequence derived from alignment at scaffold_5:669290..672821+ (Nannochloropsis oceanica)
CAGCGATGAGGCAGCCCGAATTAGGCAAGTATGCCTTTCAGCCTGTGCGT
GGCGGTGCGAACAAGGTGACGGACTACATAGTTAGAAAGTGGATGAGCAT
GGTGGTGATCTGGCTGGGCTATGGTGGTGGGCCTAAGCGTGAAGGAAAAA
AAAAAAGGTGGACTTGCCCTCGGGTTCCCTGGGCCCGCGCGGGGCCCTGG
GGTTGCGTGACAGCCCGCTAGCACGATGGCAGCAGTTGGGGCCTCAGTTC
CCCTACCACGGTGTGTTGTACCGCCGACGCCACGGCCCACGGTAACCACC
TCTCTCCAAATATGGGACACAGACAACCAATTAACACAGAGAATTTGCGT
CAGCAAGTCGAAATGGACCGTGAGCTCTTTCTGAGACACATCATCGATCT
CATCGACCTCCCAACCCTCATCTCACACTCCACTCCACTTCATTATGCTA
TCCAAGCAATGTCACTCACTTCAGGTGTCACGACTTTTGTCGATCAAGGG
GATTGTATGTTAAGGCTTTAAATACGCCCCCCATTTCTCCCCACCTCACC
TTTTCCAATATACAGGACACACTAGGTAGGGTTAAAGTCATAAATGGTAG
CGTTTCGAGCTCGGTCAAAGTGGAAGCGGGGTTGGCGGCGCCTGAGGCAT
GATGGCACAACATCAGCGGGAAGCACTGCAGATGAGGACGCGTTTACTTT
TTATTGGCTTTTCATTCAGGCGCGTCTCAACTCGCCCGAATGGCCTTTAC
CCTCTCCCTCACGCCCCATCTCCATCCTTGGAGGCATTTTCGGAGAAGTG
AGGCAGCCGCTCTTCGTACTGGCACCGATGGTCCTCCAATCAGAGAGGGC
CTTCCGGCTGCTCGTGCAACGATATGGTGTCAAGCTGTGCTTTTCGCCAA
TGCTCCTCGCCCGCAATGTCCTTAATCACGCAGAAACAGGTAAGGTCGAA
TGCCCTTATGCCCGAGAGCTTCTTCGACCCTGCCCTCAAGACAAGCCAGT
TATGGCTCAGTTAGCCGGTGCGGACCCACAACTGATTCTAGCAGCTGCCC
GTAGACTATGGGAAGGGGGAAATATAGCAGGTATCGATCTTAATTTTGGT
TGCCCACAGAAATGTGCTGAGATCGGAATGTATGGTGCATACCTTGTTCA
GAAGGATTCTGACACCGCTGTGGCCATGGTTAGGATTTTGGTTAAGGAAT
TAGGCGTGCCCGTTTCGTGTAAGTTGCGTTGTATAGGAGGAGTGGAGGCA
ACCGTTTCTTTTGCGCAGCGTTTGGAGGAGGCAGGGGCAGCGCTGTTGAC
CGTGCATGGTCGGACGCCACATCAGAGAGATCATCAGGCGATAAGTGATT
TCGATGTAATCCGTGCGGTGCGAGAAGCGGTCTCGATCCCTGTCTTGGCG
AATGGGAATTGTCGTACACGGCAGGATGCGGAATGTGCGTTGCGTTATAC
TGGGTGTGACGGCATGATGAGTGCGGTGGGGCTCCTTCGAAATCCGAGAC
TTTTTGCTGCTCCTGCTGATACAATTGCTCCAGCTGACGCTGCTCTCACA
TCAAGCGGCACCCTCACTAACCCCAGGGTCGCTTTTGCCTGTGCCTGGGA
ATACCTCGAGCTCGCTGAAGCTTTCCCACCGCCCGAGCCCCGTTGTGTGC
GTGATCATCTCCAGGTCATACTACAGGGAGTGTTGCAATTTAAAGAGGTA
GCTCTGTGGAATCTGTTGGGGAGTGATCGCATGGTTTTGAACAAACAATT
CAGAGAGTTGTTGCGACTTGGCGCGGTTCTCTGCGCGAGTCGCTCGGAGG
AGGGAATGAGGGTAGGAAAAGAAGGAGAAGGAGGAGTGTTGACGTTGCAG
GAGATTAAGTCATTGCATAGGCGGGGGGATAAAAACGAGGAGGAGCAACA
GGAAGGGGACGGGAAAGGTTTTGTTTGGGGTGGATTGTTCGAAGAGGAGG
GGGAGGAGGAAAATGAGGAGAAGGAGGAGAAGGAGGAGAAAGATGACCCG
AAGGATGAGAATCTAGTCTATGCGCTTGAGGTGCAAGTGCCATGGTCCCG
TCGGCTGCTGGATGGAAGCAAGACTGTTGAGACTCGTGGGTATGACTTGC
CTTTACATTTGTGGGGACATCCTATTCTCTTGCTTGAGTCTCCTGCTGGA
GGAGGTTTGGCCAAGCACGGTCGAGATGCAGGAAAGACGGTGGGTGTTGT
CGTCTTTGGGAGGAGTAAGAGATACCGTTCGAGGGCAGAATGGGTGGATG
ACGCGGACAAGCATGGGGTTGATCCGCAGGCAGGGCGGGAAGAATTTGGC
TGGTGTGAGCACAAGACAAAGTGGGGGTGGGAGGTTGATAACCTTGAGGT
CTGGGGGGAGGAGCAGCGGAGGGGGGTGAGCCTGAGGGAAGAACAGAGGA
TAGTTGGGAGTATTTTTTGTTTGGGAGAGGAGGGGGGAAAAAGAGAAATA
GATGCTGATTTGCAGGTAGATATAATGGCGCCAAAAGGGGACCAAGGAGT
TGTTATGTGAATATAATAGAATCCAAGGTGCAACCTTTAATGAGCATTTA
TTTTGATGATAGCACAGACCTTCAGTGACGCGAACTCAATAATTATGAAT
ATGACATACTTTGTAAAAACGGTCAGCGAATAAATAAGTTGTAAATGTTT
GCTGTCGATAATGCCGTGCTTTTTCGAATGTGTTTCCCTTTTCACGCCTC
AATATTCTTATCCTTTTTGCTTCTCGTTGTTGCCTTCATCCTTTCCCTCA
TAGCGCCATCGGACATCCTTCATCCTCCCTCCCTCCCCTCTACCTGGGCG
GCAACGGCCTCGGGGGCATCCCAGGCGGAAACCCGCGAGGAGGAGGGCCA
GGGGGAAAGCCACCGGGAGGCGGCCCCTGTCCTTGGGGGGGATAGCCTGG
CGGCATGCCACCCCCCATACCCGGAGGAGGGGGGCCACGAGGAGGGGGAT
AGCCCATACCCATCCCTGGTGGCGAAGGGCCGCGGGGGGGGAAGCCTTGA
GGCCCTGGTTTGAATAGGAGAAGGGGAAGAAAGGATGGACAACGGGGTGA
TTACAGGATGAGCATCAAGAGGGAATGATTTAAAAGGAGGAGCGAATGGA
ATTATCACTGATAAATTACAGCGAGGAAATACTTTGTGTGGCCCAATCAA
AATTAACGCATTCAGGGCATTAGAAAGAGCCCGCGCGTGAAGACGAAGCG
TGGGCAAGCGGTGCATGAATGTGGGCGAGTAGAACTGATGGGAGCCCCAT
CGTAGTGCCCAGTGAGCACCCGGCGTCCCGTCGAAAGTCTCGCCCCTCTA
TAGGTGTGGCCTTCCACACGGATGTGCACATACCACCATATAGAGGCAGA
CATATATCAAAAAAAGAAAAATCGCAGAAAGAGACGACAGACGCAGACAC
AGACACAGCCACAGACACAGCCACATACTCGCGCGTTTGAGCGCACCGAT
ACCACCAAACTTTGCCATCCCCCACCAAATGTCTCTCCAACCCCCCCCTC
TTTCACGCACCTCCCGCAGGTGTCATCAACGA

Coding sequence (CDS) from alignment at scaffold_5:669290..672821+

>mRNA_2566 ID=mRNA_2566|Name=jgi.p|Nanoce1779_2|552392|organism=Nannochloropsis oceanica|type=CDS|length=1917bp|location=Sequence derived from alignment at scaffold_5:669290..672821+ (Nannochloropsis oceanica)
ATGGTAGCGTTTCGAGCTCGGTCAAAGTGGAAGCGGGGTTGGCGGCGCCT
GAGGCATGATGGCACAACATCAGCGGGAAGCACTGCAGATGAGGACGCGT
TTACTTTTTATTGGCTTTTCATTCAGGCGCGTCTCAACTCGCCCGAATGG
CCTTTACCCTCTCCCTCACGCCCCATCTCCATCCTTGGAGGCATTTTCGG
AGAAGTGAGGCAGCCGCTCTTCGTACTGGCACCGATGGTCCTCCAATCAG
AGAGGGCCTTCCGGCTGCTCGTGCAACGATATGGTGTCAAGCTGTGCTTT
TCGCCAATGCTCCTCGCCCGCAATGTCCTTAATCACGCAGAAACAGGTAA
GGTCGAATGCCCTTATGCCCGAGAGCTTCTTCGACCCTGCCCTCAAGACA
AGCCAGTTATGGCTCAGTTAGCCGGTGCGGACCCACAACTGATTCTAGCA
GCTGCCCGTAGACTATGGGAAGGGGGAAATATAGCAGGTATCGATCTTAA
TTTTGGTTGCCCACAGAAATGTGCTGAGATCGGAATGTATGGTGCATACC
TTGTTCAGAAGGATTCTGACACCGCTGTGGCCATGGTTAGGATTTTGGTT
AAGGAATTAGGCGTGCCCGTTTCGTGTAAGTTGCGTTGTATAGGAGGAGT
GGAGGCAACCGTTTCTTTTGCGCAGCGTTTGGAGGAGGCAGGGGCAGCGC
TGTTGACCGTGCATGGTCGGACGCCACATCAGAGAGATCATCAGGCGATA
AGTGATTTCGATGTAATCCGTGCGGTGCGAGAAGCGGTCTCGATCCCTGT
CTTGGCGAATGGGAATTGTCGTACACGGCAGGATGCGGAATGTGCGTTGC
GTTATACTGGGTGTGACGGCATGATGAGTGCGGTGGGGCTCCTTCGAAAT
CCGAGACTTTTTGCTGCTCCTGCTGATACAATTGCTCCAGCTGACGCTGC
TCTCACATCAAGCGGCACCCTCACTAACCCCAGGGTCGCTTTTGCCTGTG
CCTGGGAATACCTCGAGCTCGCTGAAGCTTTCCCACCGCCCGAGCCCCGT
TGTGTGCGTGATCATCTCCAGGTCATACTACAGGGAGTGTTGCAATTTAA
AGAGGTAGCTCTGTGGAATCTGTTGGGGAGTGATCGCATGGTTTTGAACA
AACAATTCAGAGAGTTGTTGCGACTTGGCGCGGTTCTCTGCGCGAGTCGC
TCGGAGGAGGGAATGAGGGTAGGAAAAGAAGGAGAAGGAGGAGTGTTGAC
GTTGCAGGAGATTAAGTCATTGCATAGGCGGGGGGATAAAAACGAGGAGG
AGCAACAGGAAGGGGACGGGAAAGGTTTTGTTTGGGGTGGATTGTTCGAA
GAGGAGGGGGAGGAGGAAAATGAGGAGAAGGAGGAGAAGGAGGAGAAAGA
TGACCCGAAGGATGAGAATCTAGTCTATGCGCTTGAGGTGCAAGTGCCAT
GGTCCCGTCGGCTGCTGGATGGAAGCAAGACTGTTGAGACTCGTGGGTAT
GACTTGCCTTTACATTTGTGGGGACATCCTATTCTCTTGCTTGAGTCTCC
TGCTGGAGGAGGTTTGGCCAAGCACGGTCGAGATGCAGGAAAGACGGTGG
GTGTTGTCGTCTTTGGGAGGAGTAAGAGATACCGTTCGAGGGCAGAATGG
GTGGATGACGCGGACAAGCATGGGGTTGATCCGCAGGCAGGGCGGGAAGA
ATTTGGCTGGTGTGAGCACAAGACAAAGTGGGGGTGGGAGGTTGATAACC
TTGAGGTCTGGGGGGAGGAGCAGCGGAGGGGGGTGAGCCTGAGGGAAGAA
CAGAGGATAGTTGGGAGTATTTTTTGTTTGGGAGAGGAGGGGGGAAAAAG
AGAAATAGATGCTGATTTGCAGGTAGATATAATGGCGCCAAAAGGGGACC
AAGGAGTTGTTATGTGA

Synonyms

Publications