jgi.p|Nanoce1779_2|628597, mRNA_2564 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628597
Unique Name	mRNA_2564
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2799
Alignment location	scaffold_5:665250..668048 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	628683
Track	FilteredModels2
ProteinId	628597

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:665250..668048 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628597	gene_2564	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628597	mRNA_2564-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2564	CDS_2564	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:665250..668048+
coding sequence from alignment at scaffold_5:665250..668048+

mRNA sequence

>mRNA_2564 ID=mRNA_2564|Name=jgi.p|Nanoce1779_2|628597|organism=Nannochloropsis oceanica|type=mRNA|length=2799bp
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCATCCTCCTG
CTATTGCTCATCCTCCCCCTCCTCCGCCTCCTCCTCGTCGTTGTCGGACC
CTCTCGCTATTTTTACACAGCTCCGACGACGTGGTGGAAAGAGGTGTGGC
TACTGTGGGGAGACAGCAGGAACGGGGGGCTCTTTCCGCTTCAGAGGCTT
AACAATGACCAGCGCGCCATCATGGACAATATAGTAGACCACTTTCATGC
CCGCGCTGCGCACGTTCACAACCCTACGACCCATCGCCGCCCAATTCCCC
TCCATCTCTGTCTGCTTGGTGGGCCTGGTGCGGGAAAGACATACATGGCG
ACGGCCCTCTATTCCATGCAGATGCCGAATGGCACTCCGCCGGAGCCCAT
CATGTCCATCTCCGATTTTAGTTGTCCCGCTTCAGCGTTGCCTAATGGGC
AGACGTCTATCGCCGCCAAGCGCCTTTCCGTACTTCGCAAAGGTGTATGT
TTCAGTATGACAGAGCCGTGGTCAGGTGAAGCGGAGATTCTCCCAGAAGC
GCTGTACGATTTCGTAGAACGCGTGCGTGGGGTGTGGCTTGTGGTGGTGA
TTGAGGAGGTGTCGGTCATGACGTTGCGGACGCTTGTCGCCCTAGACCAG
CGTCTGCGTGCTGACACAGGACAAGTCTTTCGTAGGGATCAGCATTATGC
TGATGGGGGATTTTCTACAGCTTGGCCCCATCCCACCACCAAGCACGTTC
GAAGGGTTGTTCAAACGGACGTAATTGGTACCAACGCCAGAATGAGTATG
TCCACCTTCCCAGACATAGGACAAGAATGAACGTTGAACATAACCACTAT
TGGAAATAATCCTGGTTGTTACAGAAAAGGTCTGGATGCGCTCGCACACC
GGGGGGGGGGGGCGAGGAACTCACCCGCGGGGACGACTTGAGGTCCCTCT
GATTTAGGTGTGTATAACCGATCGCCCCCTCGGTAAGTGCTCCCTTTTAA
AACGCTACAATTATGTTAAGGCAACGCCACCCTTGCTTGTTTGCGAAGCA
AGATTTTATCATCATTTACTTTTTGTGTCCTGGCATGTACGGCACCACAA
CTTTAGGCTGACCTCGTCTTTGGATTTATGCTTTTCATACAGGTCTCTAG
TCTACCGCCCCACTCGGACTTCCTAGGCTAGGCATAGTGTTCAAAAATAT
GACACGGCAACAAGAAGGCAGTTCCTAGAAATGTCTTCCTAATGCTTTCT
GGTTCTACAGCTGAACCAAACTAGGATTGCCCCTGGCCCTTAGACTTTCC
CTCTTATCGTCGACACACTGCTCTTAGTGCTCTTGAGGGGTGGTCGAGGA
CTTTTTTAGTGACCTAAATCAAGTATAATTATATATAACACAAGATTTTG
CGCTCTTAAGCAACAATCCTCGGGAGGGTCCCGTGTACATGTATTTAAAA
AAAAGTTAGAACAGACGGAATTCAGGCAGGGAACAGCAAAATTTATGCGG
TCTTTGCGGAATCAGACGTAGGCACTAATTTTTGCATGTTTTTGTGTTTG
CTTTGATCGTTGACTGTCAAGAATATATCGCATGACAGCACCAGTGCTAT
TTCCATGCTTTTTTCCATCTTCTCACATAAGCATTACGCACAGACCCTCC
CTCCCTCTCTTCTAGTCAATAAGGCATTTCCATCTGCTGCTGCAACTCCT
CCATCTCCCTCCTCAACCCCCTATTCTCCTCCATTAATACCTGGAATGTT
TGCACCAGTCCTTGCATTGCCGCATGCGTAGTTTCCGAGGTCTTTAATAA
CTCCAGATGTAGCCCCCGAAGGTCCCTGGCGAGCTCATCCCTCAGATCGT
CCACCATGTCCTTGACTTTGCTTTCAACCAGCTGGGCGAACTCTTTGGTG
TTGATATCGCTGTTTGTGCTTCGCGCAGCAGCTGAGGCGATGGCTGCAGC
AGCAGAAGAGTGATTTTGCGGGCCGAAAGCTGTGGCGGAGATAGAGCTGG
AGAAATTGAGCTTGCCTCGCCAACGGAAGGCGTTGCTGGTGGTGGCGGTG
TTGCTGCTGTTGGCATTGAAAGCGGAATTTTCGCTACCAGCTGGTGATTG
CGGTTGAGTTTGTATCTTTTCCTGCTGTTGCTCGACAGGTACAGAGGGTT
GGACTTCCTCTTGTGAAATGGGAGGCCGCTGGGTTGCTACTACCGTCGCG
GGGTTGGTGCTGACTTTTGATGGAGGGATAGAGGAAAAGGCGAGGGAAAC
ATTATTTGTCCTGCTGGAAGGCAACGCGCTAATGCTGCTGCTATCGCTGC
TGCTATTGCTGCTGTTTTCATCAGTGTTGAGGGAAGATGGAGGGAAGGAA
GGAGGGATCTCACGGACTGGCGAGGGGGCAGGTTGGACGGTATGCCCTTG
CCTGGCGATGGCACTGGCAGCGGCAGGGGAAGATATCGAGGTCGAGGGGA
GAGAGGTAATAGATGAGAATGACACAGCAACAGGACTACTGGCTTTTGCG
CAAAGGGGAGCCACAGCTGCTGTGCTGCTGCTACCGCTGCTGCCGCCGCT
AGTAATAGTGGTGGTATTGCTGGTGGTTCTTGTACTTGTCTGTTTCTGAG
CCGAGGAGATCGAGAGGGGTATCTTGGGTGCCGTGGGAGATGACGCCGGC
TCGGTATTTTTGGTGGTTGTGCTGCTGCCGCTACTCCTGCTCGTACTCCT
TCCGTTCATGCTGGTAGAGCTGCCGTAGGTGGTGTGTCCGCTACTACGAG
GGTGCTGCGCCTGCACAGATAGAGCTCGAATGGGGAGGCCTTGGAAGGC

protein sequence of jgi.p|Nanoce1779_2|628597

>mRNA_2564-protein ID=mRNA_2564-protein|Name=jgi.p|Nanoce1779_2|628597|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MDNIVDHFHARAAHVHNPTTHRRPIPLHLCLLGGPGAGKTYMATALYSMQ
MPNGTPPEPIMSISDFSCPASALPNGQTSIAAKRLSVLRKGVCFSMTEPW
SGEAEILPEALYDFVERVRGVWLVVVIEEVSVMTLRTLVALDQRLRADTG
QVFRRDQHYADGGFSTAWPHPTTKHVRRVVQTDVIGTNARMSMSTFPDIG
QE*

mRNA from alignment at scaffold_5:665250..668048+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2564 ID=mRNA_2564|Name=jgi.p|Nanoce1779_2|628597|organism=Nannochloropsis oceanica|type=mRNA|length=2799bp|location=Sequence derived from alignment at scaffold_5:665250..668048+ (Nannochloropsis oceanica)
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCATCCTCCTG
CTATTGCTCATCCTCCCCCTCCTCCGCCTCCTCCTCGTCGTTGTCGGACC
CTCTCGCTATTTTTACACAGCTCCGACGACGTGGTGGAAAGAGGTGTGGC
TACTGTGGGGAGACAGCAGGAACGGGGGGCTCTTTCCGCTTCAGAGGCTT
AACAATGACCAGCGCGCCATCATGGACAATATAGTAGACCACTTTCATGC
CCGCGCTGCGCACGTTCACAACCCTACGACCCATCGCCGCCCAATTCCCC
TCCATCTCTGTCTGCTTGGTGGGCCTGGTGCGGGAAAGACATACATGGCG
ACGGCCCTCTATTCCATGCAGATGCCGAATGGCACTCCGCCGGAGCCCAT
CATGTCCATCTCCGATTTTAGTTGTCCCGCTTCAGCGTTGCCTAATGGGC
AGACGTCTATCGCCGCCAAGCGCCTTTCCGTACTTCGCAAAGGTGTATGT
TTCAGTATGACAGAGCCGTGGTCAGGTGAAGCGGAGATTCTCCCAGAAGC
GCTGTACGATTTCGTAGAACGCGTGCGTGGGGTGTGGCTTGTGGTGGTGA
TTGAGGAGGTGTCGGTCATGACGTTGCGGACGCTTGTCGCCCTAGACCAG
CGTCTGCGTGCTGACACAGGACAAGTCTTTCGTAGGGATCAGCATTATGC
TGATGGGGGATTTTCTACAGCTTGGCCCCATCCCACCACCAAGCACGTTC
GAAGGGTTGTTCAAACGGACGTAATTGGTACCAACGCCAGAATGAGTATG
TCCACCTTCCCAGACATAGGACAAGAATGAACGTTGAACATAACCACTAT
TGGAAATAATCCTGGTTGTTACAGAAAAGGTCTGGATGCGCTCGCACACC
GGGGGGGGGGGGCGAGGAACTCACCCGCGGGGACGACTTGAGGTCCCTCT
GATTTAGGTGTGTATAACCGATCGCCCCCTCGGTAAGTGCTCCCTTTTAA
AACGCTACAATTATGTTAAGGCAACGCCACCCTTGCTTGTTTGCGAAGCA
AGATTTTATCATCATTTACTTTTTGTGTCCTGGCATGTACGGCACCACAA
CTTTAGGCTGACCTCGTCTTTGGATTTATGCTTTTCATACAGGTCTCTAG
TCTACCGCCCCACTCGGACTTCCTAGGCTAGGCATAGTGTTCAAAAATAT
GACACGGCAACAAGAAGGCAGTTCCTAGAAATGTCTTCCTAATGCTTTCT
GGTTCTACAGCTGAACCAAACTAGGATTGCCCCTGGCCCTTAGACTTTCC
CTCTTATCGTCGACACACTGCTCTTAGTGCTCTTGAGGGGTGGTCGAGGA
CTTTTTTAGTGACCTAAATCAAGTATAATTATATATAACACAAGATTTTG
CGCTCTTAAGCAACAATCCTCGGGAGGGTCCCGTGTACATGTATTTAAAA
AAAAGTTAGAACAGACGGAATTCAGGCAGGGAACAGCAAAATTTATGCGG
TCTTTGCGGAATCAGACGTAGGCACTAATTTTTGCATGTTTTTGTGTTTG
CTTTGATCGTTGACTGTCAAGAATATATCGCATGACAGCACCAGTGCTAT
TTCCATGCTTTTTTCCATCTTCTCACATAAGCATTACGCACAGACCCTCC
CTCCCTCTCTTCTAGTCAATAAGGCATTTCCATCTGCTGCTGCAACTCCT
CCATCTCCCTCCTCAACCCCCTATTCTCCTCCATTAATACCTGGAATGTT
TGCACCAGTCCTTGCATTGCCGCATGCGTAGTTTCCGAGGTCTTTAATAA
CTCCAGATGTAGCCCCCGAAGGTCCCTGGCGAGCTCATCCCTCAGATCGT
CCACCATGTCCTTGACTTTGCTTTCAACCAGCTGGGCGAACTCTTTGGTG
TTGATATCGCTGTTTGTGCTTCGCGCAGCAGCTGAGGCGATGGCTGCAGC
AGCAGAAGAGTGATTTTGCGGGCCGAAAGCTGTGGCGGAGATAGAGCTGG
AGAAATTGAGCTTGCCTCGCCAACGGAAGGCGTTGCTGGTGGTGGCGGTG
TTGCTGCTGTTGGCATTGAAAGCGGAATTTTCGCTACCAGCTGGTGATTG
CGGTTGAGTTTGTATCTTTTCCTGCTGTTGCTCGACAGGTACAGAGGGTT
GGACTTCCTCTTGTGAAATGGGAGGCCGCTGGGTTGCTACTACCGTCGCG
GGGTTGGTGCTGACTTTTGATGGAGGGATAGAGGAAAAGGCGAGGGAAAC
ATTATTTGTCCTGCTGGAAGGCAACGCGCTAATGCTGCTGCTATCGCTGC
TGCTATTGCTGCTGTTTTCATCAGTGTTGAGGGAAGATGGAGGGAAGGAA
GGAGGGATCTCACGGACTGGCGAGGGGGCAGGTTGGACGGTATGCCCTTG
CCTGGCGATGGCACTGGCAGCGGCAGGGGAAGATATCGAGGTCGAGGGGA
GAGAGGTAATAGATGAGAATGACACAGCAACAGGACTACTGGCTTTTGCG
CAAAGGGGAGCCACAGCTGCTGTGCTGCTGCTACCGCTGCTGCCGCCGCT
AGTAATAGTGGTGGTATTGCTGGTGGTTCTTGTACTTGTCTGTTTCTGAG
CCGAGGAGATCGAGAGGGGTATCTTGGGTGCCGTGGGAGATGACGCCGGC
TCGGTATTTTTGGTGGTTGTGCTGCTGCCGCTACTCCTGCTCGTACTCCT
TCCGTTCATGCTGGTAGAGCTGCCGTAGGTGGTGTGTCCGCTACTACGAG
GGTGCTGCGCCTGCACAGATAGAGCTCGAATGGGGAGGCCTTGGAAGGC

Coding sequence (CDS) from alignment at scaffold_5:665250..668048+

>mRNA_2564 ID=mRNA_2564|Name=jgi.p|Nanoce1779_2|628597|organism=Nannochloropsis oceanica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_5:665250..668048+ (Nannochloropsis oceanica)
ATGGACAATATAGTAGACCACTTTCATGCCCGCGCTGCGCACGTTCACAA
CCCTACGACCCATCGCCGCCCAATTCCCCTCCATCTCTGTCTGCTTGGTG
GGCCTGGTGCGGGAAAGACATACATGGCGACGGCCCTCTATTCCATGCAG
ATGCCGAATGGCACTCCGCCGGAGCCCATCATGTCCATCTCCGATTTTAG
TTGTCCCGCTTCAGCGTTGCCTAATGGGCAGACGTCTATCGCCGCCAAGC
GCCTTTCCGTACTTCGCAAAGGTGTATGTTTCAGTATGACAGAGCCGTGG
TCAGGTGAAGCGGAGATTCTCCCAGAAGCGCTGTACGATTTCGTAGAACG
CGTGCGTGGGGTGTGGCTTGTGGTGGTGATTGAGGAGGTGTCGGTCATGA
CGTTGCGGACGCTTGTCGCCCTAGACCAGCGTCTGCGTGCTGACACAGGA
CAAGTCTTTCGTAGGGATCAGCATTATGCTGATGGGGGATTTTCTACAGC
TTGGCCCCATCCCACCACCAAGCACGTTCGAAGGGTTGTTCAAACGGACG
TAATTGGTACCAACGCCAGAATGAGTATGTCCACCTTCCCAGACATAGGA
CAAGAATGA

Synonyms

Publications