jgi.p|Nanoce1779_2|332466, mRNA_2563 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|332466
Unique Name	mRNA_2563
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2649
Alignment location	scaffold_5:663243..666103 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	332552
Track	FilteredModels2
ProteinId	332466

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:663243..666103 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|332466	gene_2563	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|332466	mRNA_2563-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2563	CDS_2563	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:663243..666103+
coding sequence from alignment at scaffold_5:663243..666103+

mRNA sequence

>mRNA_2563 ID=mRNA_2563|Name=jgi.p|Nanoce1779_2|332466|organism=Nannochloropsis oceanica|type=mRNA|length=2649bp
GAAGCCATGGGTTGGTCAGAGTGTTAAAAGGGACTTGACGATTCCAGGAA
TTCAGTGCTGTGATCAAGAAGGTGCCTTCTGAGACTGGGGTTTGCTCAGC
GACTTCGTGGCTGATGGTGAACAACAAGGCATTATAAATTCTCCCCTCGA
AGAGAAAGAAAAGAAGGCAGTGACTGTCTCAGAGAAGATCTCTCTTTCCC
GATGGCGGGGCCCGATTCAATTAATGTTTGCTTTCTTTACAAACAGGATC
ATCGATTTCAAATTTTATGTGCGACCAATTCCTACTCACCTTAAGCAAGC
GTCTAGTTGACAGCAGGTTGGGCACACGGTAAGGGCCGCACGATGCCAAC
GTGAGAGCTTCACCAACGGCTCCCCCAACGGCAATGCTTCAGACGATACG
ATAAAAGATAAGATGAAAGATAAAAATGAGATAAAGATAAGATAAAGATA
AGATAAAGATAAGATAAAGATAAAGATAAGGATAAAATGTGTTATCGTTA
GCCAAATCCGTAAACCTGGGCAAATTTCTTACGCTAGTGTCGATGACGAG
ATAACGAGATGACGAGTTAATAGTTCTTTTCTGTCATAGCTATCCTACAA
ACCTAGAACTATCGCATGCAACCTGACGTCCCCTTGGAATTGCATGCGTG
TGAAAGCCTTCTAACAATAAAATGTTGCCTAAACTTCCCAATATTCTTGT
CTGAGTTTTCTAGCGACTTTGACAGGTTTTTCATCTAGCGAAGTCCCCGG
ACGGACCAAACAGGGCCAGGAGGGGGGGGGGGGGAAGGACGTCACAGGGG
AGGCAACACATACAGTGTCCGCATATCCTACCGCGCAGTTAAAACCAAAC
CGGAGATCATGGGGACGATCTTCTCCACGGACCATACTCCTGTACACCCT
TTTGATGTTACGTGCCTCATTGCCATCCCGAGACATCACAAGTCTCACAC
CACCAAAGTCCTCGGATGGCCGCACGTGACCTCCTCCTCCTCCGCCGCCG
CCGCCGCCGCCATCTCCTCCTCTTCCTCCTCCTGGAACTCATTCTCTTTT
TCTCCCTCCCACTCATCCTCTACCTCCTCCTCCCGCTATTGCTCCTCTTT
CTCTCCCTCCCCCTCCTCCTCCGCCTCCCCGTCTTCCTCCGCCTCCTCCT
CCTTCTCTCCCTCCTCCTTCTCTCCCTCCTCTCCCTCTCCCTCCTCCTTC
TCTCCCTCCTCCACCACCTCTACCTCCTCCCCCTCCTCCTCCTCCTCCTC
TTTTTCCTCTTCTTCCTCCTCCTCCTCCTCCTTCTCCTTCTCCTCCTTCT
TCTCCTTCTCCTCCTTTTTCTTCTTCTTCTCCTTCTCCTCCTTGTTCTTC
TCATTCTTGTTCTTCTTCTTCTTCTTCTCCTTCTCCTAATGCTCCTCCTT
CCCAGTACCCTCCCCCTCCTCCTTTTCCTCTTCGTCGGAACCCTCTCACC
ATCTTTCTCTCTCCCCTTCCCGCTCCTCCTGTTGTTGCTGCTCGAACTCT
TGCTATTGCTGCGAGTGCTTCTGCTGCTGTTTCTCGGTGTAAAGATAGTA
TTGCAGGGATTTCTCTGCTCCTCCTCCCCCTTCCCCTCCTCCTCCTCCTG
TTGCTGCTTCGGCCGCCCCAACACCTCCCACTCCTACTCTTTCTCGATCC
CCTCCTGTGTTCGTCTTTTCTCCCCTCCTCCCTCCTCCTGCTGCCCGGGC
TCGTGCTGCTGTGGTTGCTACCTGTATTATCACTTTCATTCGGCTGCTTC
TGCTGCTTCGGCTGCCCTGATTCTTTTTCCTCTTCCTCCTTCTCTTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCATCCTCCTGCTATT
GCTCATCCTCCCCCTCCTCCGCCTCCTCCTCGTCGTTGTCGGACCCTCTC
GCTATTTTTACACAGCTCCGACGACGTGGTGGAAAGAGGTGTGGCTACTG
TGGGGAGACAGCAGGAACGGGGGGCTCTTTCCGCTTCAGAGGCTTAACAA
TGACCAGCGCGCCATCATGGACAATATAGTAGACCACTTTCATGCCCGCG
CTGCGCACGTTCACAACCCTACGACCCATCGCCGCCCAATTCCCCTCCAT
CTCTGTCTGCTTGGTGGGCCTGGTGCGGGAAAGACATACATGGCGACGGC
CCTCTATTCCATGCAGATGCCGAATGGCACTCCGCCGGAGCCCATCATGT
CCATCTCCGATTTTAGTTGTCCCGCTTCAGCGTTGCCTAATGGGCAGACG
TCTATCGCCGCCAAGCGCCTTTCCGTACTTCGCAAAGGTGTATGTTTCAG
TATGACAGAGCCGTGGTCAGGTGAAGCGGAGATTCTCCCAGAAGCGCTGT
ACGATTTCGTAGAACGCGTGCGTGGGGTGTGGCTTGTGGTGGTGATTGAG
GAGGTGTCGGTCATGACGTTGCGGACGCTTGTCGCCCTAGACCAGCGTCT
GCGTGCTGACACAGGACAAGTCTTTCGTAGGGATCAGCATTATGCTGATG
GGGGATTTTCTACAGCTTGGCCCCATCCCACCACCAAGCACGTTCGAAGG
GTTGTTCAAACGGACGTAATTGGTACCAACGCCAGAATGAGTATGTCCAC
CTTCCCAGACATAGGACAAGAATGAACGTTGAACATAACCACTATTGGA

protein sequence of jgi.p|Nanoce1779_2|332466

>mRNA_2563-protein ID=mRNA_2563-protein|Name=jgi.p|Nanoce1779_2|332466|organism=Nannochloropsis oceanica|type=polypeptide|length=344bp
MAARDLLLLRRRRRRHLLLFLLLELILFFSLPLILYLLLPLLLLFLSLPL
LLRLPVFLRLLLLLSLLLLSLLSLSLLLLSLLHHLYLLPLLLLLLFFLFF
LLLLLLLLLLLLLLLLLFLLLLLLLLVLLILVLLLLLLLLLMLLLPSTLP
LLLFLFVGTLSPSFSLPFPLLLLLLLELLLLLRVLLLLFLGVKIVLQGFL
CSSSPFPSSSSCCCFGRPNTSHSYSFSIPSCVRLFSPPPSSCCPGSCCCG
CYLYYHFHSAASAASAALILFPLPPSLSSSSSSSSSSSSPHPPAIAHPPP
PPPPPRRCRTLSLFLHSSDDVVERGVATVGRQQERGALSASEA*

mRNA from alignment at scaffold_5:663243..666103+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2563 ID=mRNA_2563|Name=jgi.p|Nanoce1779_2|332466|organism=Nannochloropsis oceanica|type=mRNA|length=2861bp|location=Sequence derived from alignment at scaffold_5:663243..666103+ (Nannochloropsis oceanica)
GAAGCCATGGGTTGGTCAGAGTGTTAAAAGGGACTTGACGATTCCAGGAA
TTCAGTGCTGTGATCAAGAAGGTGCCTTCTGAGACTGGGGTTTGCTCAGC
GACTTCGTGGCTGATGGTGAACAACAAGGCATTATAAATTCTCCCCTCGA
AGAGAAAGAAAAGAAGGCAGTGACTGTCTCAGAGAAGATCTCTCTTTCCC
GATGGCGGGGCCCGATTCAATTAATGTTTGCTTTCTTTACAAACAGGATC
ATCGATTTCAAATTTTATGTGCGACCAATTCCTACTCACCTTAAGCAAGC
GTCTAGTTGACAGCAGGTTGGGCACACGGTAAGGGCCGCACGATGCCAAC
GTGAGAGCTTCACCAACGGCTCCCCCAACGGCAATGCTTCAGACGATACG
ATAAAAGATAAGATGAAAGATAAAAATGAGATAAAGATAAGATAAAGATA
AGATAAAGATAAGATAAAGATAAAGATAAGGATAAAATGTGTTATCGTTA
GCCAAATCCGTAAACCTGGGCAAATTTCTTACGCTAGTGTCGATGACGAG
ATAACGAGATGACGAGTTAATAGTTCTTTTCTGTCATAGCTATCCTACAA
ACCTAGAACTATCGCATGCAACCTGACGTCCCCTTGGAATTGCATGCGTG
TGAAAGCCTTCTAACAATAAAATGTTGCCTAAACTTCCCAATATTCTTGT
CTGAGTTTTCTAGCGACTTTGACAGGTTTTTCATCTAGCGAAGTCCCCGG
ACGGACCAAACAGGGCCAGGAGGGGGGGGGGGGGAAGGACGTCACAGGGG
AGGCAACACATACAGTGTCCGCATATCCTACCGCGCAGTTAAAACCAAAC
CGGAGATCATGGGGACGATCTTCTCCACGGACCATACTCCTGTACACCCT
TTTGATGTTACGTGCCTCATTGCCATCCCGAGACATCACAAGTCTCACAC
CACCAAAGTCCTCGGATGGCCGCACGTGACCTCCTCCTCCTCCGCCGCCG
CCGCCGCCGCCATCTCCTCCTCTTCCTCCTCCTGGAACTCATTCTCTTTT
TCTCCCTCCCACTCATCCTCTACCTCCTCCTCCCGCTATTGCTCCTCTTT
CTCTCCCTCCCCCTCCTCCTCCGCCTCCCCGTCTTCCTCCGCCTCCTCCT
CCTTCTCTCCCTCCTCCTTCTCTCCCTCCTCTCCCTCTCCCTCCTCCTTC
TCTCCCTCCTCCACCACCTCTACCTCCTCCCCCTCCTCCTCCTCCTCCTC
TTTTTCCTCTTCTTCCTCCTCCTCCTCCTCCTTCTCCTTCTCCTCCTTCT
TCTCCTTCTCCTCCTTTTTCTTCTTCTTCTCCTTCTCCTCCTTGTTCTTC
TCATTCTTGTTCTTCTTCTTCTTCTTCTCCTTCTCCTAATGCTCCTCCTT
CCCAGTACCCTCCCCCTCCTCCTTTTCCTCTTCGTCGGAACCCTCTCACC
ATCTTTCTCTCTCCCCTTCCCGCTCCTCCTGTTGTTGCTGCTCGAACTCT
TGCTATTGCTGCGAGTGCTTCTGCTGCTGTTTCTCGGTGTAAAGATAGTA
TTGCAGGGATTTCTCTGCTCCTCCTCCCCCTTCCCCTCCTCCTCCTCCTG
TTGCTGCTTCGGCCGCCCCAACACCTCCCACTCCTACTCTTTCTCGATCC
CCTCCTGTGTTCGTCTTTTCTCCCCTCCTCCCTCCTCCTGCTGCCCGGGC
TCGTGCTGCTGTGGTTGCTACCTGTATTATCACTTTCATTCGGCTGCTTC
TGCTGCTTCGGCTGCCCTGATTCTTTTTCCTCTTCCTCCTCCCCCTCCTC
CTTCCCCTCCTCCCGCTGCTGGTGTTGGTGCTGGTGCTAGTGCTAATGCT
GGTGCTGGTGTTGCTCTGGCTCCTGCATACCCCCTCCCTCCCAGTTCCGT
TCCTCCTCCAGCTTGCGCACCTCCACCTCCACCTCCACCTCCTCGCCCTC
ATCCGCCTCCTCTTCCTCTTCTTCCTCTTCTTCCTCTTCTTCTTCTCCTC
CTTCTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCAT
CCTCCTGCTATTGCTCATCCTCCCCCTCCTCCGCCTCCTCCTCGTCGTTG
TCGGACCCTCTCGCTATTTTTACACAGCTCCGACGACGTGGTGGAAAGAG
GTGTGGCTACTGTGGGGAGACAGCAGGAACGGGGGGCTCTTTCCGCTTCA
GAGGCTTAACAATGACCAGCGCGCCATCATGGACAATATAGTAGACCACT
TTCATGCCCGCGCTGCGCACGTTCACAACCCTACGACCCATCGCCGCCCA
ATTCCCCTCCATCTCTGTCTGCTTGGTGGGCCTGGTGCGGGAAAGACATA
CATGGCGACGGCCCTCTATTCCATGCAGATGCCGAATGGCACTCCGCCGG
AGCCCATCATGTCCATCTCCGATTTTAGTTGTCCCGCTTCAGCGTTGCCT
AATGGGCAGACGTCTATCGCCGCCAAGCGCCTTTCCGTACTTCGCAAAGG
TGTATGTTTCAGTATGACAGAGCCGTGGTCAGGTGAAGCGGAGATTCTCC
CAGAAGCGCTGTACGATTTCGTAGAACGCGTGCGTGGGGTGTGGCTTGTG
GTGGTGATTGAGGAGGTGTCGGTCATGACGTTGCGGACGCTTGTCGCCCT
AGACCAGCGTCTGCGTGCTGACACAGGACAAGTCTTTCGTAGGGATCAGC
ATTATGCTGATGGGGGATTTTCTACAGCTTGGCCCCATCCCACCACCAAG
CACGTTCGAAGGGTTGTTCAAACGGACGTAATTGGTACCAACGCCAGAAT
GAGTATGTCCACCTTCCCAGACATAGGACAAGAATGAACGTTGAACATAA
CCACTATTGGA

Coding sequence (CDS) from alignment at scaffold_5:663243..666103+

>mRNA_2563 ID=mRNA_2563|Name=jgi.p|Nanoce1779_2|332466|organism=Nannochloropsis oceanica|type=CDS|length=2064bp|location=Sequence derived from alignment at scaffold_5:663243..666103+ (Nannochloropsis oceanica)
ATGGCCGCACGTGACCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCCATCT
CCTCCTCTTCCTCCTCCTGGAACTCATTCTCTTTTTCTCCCTCCCACTCA
TCCTCTACCTCCTCCTCCCGCTATTGCTCCTCTTTCTCTCCCTCCCCCTC
CTCCTCCGCCTCCCCGTCTTCCTCCGCCTCCTCCTCCTTCTCTCCCTCCT
CCTTCTCTCCCTCCTCTCCCTCTCCCTCCTCCTTCTCTCCCTCCTCCACC
ACCTCTACCTCCTCCCCCTCCTCCTCCTCCTCCTCTTTTTCCTCTTCTTC
CTCCTCCTCCTCCTCCTTCTCCTTCTCCTCCTTCTTCTCCTTCTCCTCCT
TTTTCTTCTTCTTCTCCTTCTCCTCCTTGTTCTTCTCATTCTTGTTCTTC
TTCTTCTTCTTCTCCTTCTCCTAATGCTCCTCCTTCCCAGTACCCTCCCC
CTCCTCCTTTTCCTCTTCGTCGGAACCCTCTCACCATCTTTCTCTCTCCC
CTTCCCGCTCCTCCTGTTGTTGCTGCTCGAACTCTTGCTATTGCTGCGAG
TGCTTCTGCTGCTGTTTCTCGGTGTAAAGATAGTATTGCAGGGATTTCTC
TGCTCCTCCTCCCCCTTCCCCTCCTCCTCCTCCTGTTGCTGCTTCGGCCG
CCCCAACACCTCCCACTCCTACTCTTTCTCGATCCCCTCCTGTGTTCGTC
TTTTCTCCCCTCCTCCCTCCTCCTGCTGCCCGGGCTCGTGCTGCTGTGGT
TGCTACCTGTATTATCACTTTCATTCGGCTGCTTCTGCTGCTTCGGCTGC
CCTGATTCTTTTTCCTCTTCCTCCTTCTCTTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTCCTCATCCTCCTGCTATTGCTCATCCTCCCCCT
CCTCCGCCTCCTCCTCGTCGTTGTCGGACCCTCTCGCTATTTTTACACAG
CTCCGACGACGTGGTGGAAAGAGGTGTGGCTACTGTGGGGAGACAGCAGG
AACGGGGGGCTCTTTCCGCTTCAGAGGCTTAAATGGCCGCACGTGACCTC
CTCCTCCTCCGCCGCCGCCGCCGCCGCCATCTCCTCCTCTTCCTCCTCCT
GGAACTCATTCTCTTTTTCTCCCTCCCACTCATCCTCTACCTCCTCCTCC
CGCTATTGCTCCTCTTTCTCTCCCTCCCCCTCCTCCTCCGCCTCCCCGTC
TTCCTCCGCCTCCTCCTCCTTCTCTCCCTCCTCCTTCTCTCCCTCCTCTC
CCTCTCCCTCCTCCTTCTCTCCCTCCTCCACCACCTCTACCTCCTCCCCC
TCCTCCTCCTCCTCCTCTTTTTCCTCTTCTTCCTCCTCCTCCTCCTCCTT
CTCCTTCTCCTCCTTCTTCTCCTTCTCCTCCTTTTTCTTCTTCTTCTCCT
TCTCCTCCTTGTTCTTCTCATTCTTGTTCTTCTTCTTCTTCTTCTCCTTC
TCCTAATGCTCCTCCTTCCCAGTACCCTCCCCCTCCTCCTTTTCCTCTTC
GTCGGAACCCTCTCACCATCTTTCTCTCTCCCCTTCCCGCTCCTCCTGTT
GTTGCTGCTCGAACTCTTGCTATTGCTGCGAGTGCTTCTGCTGCTGTTTC
TCGGTGTAAAGATAGTATTGCAGGGATTTCTCTGCTCCTCCTCCCCCTTC
CCCTCCTCCTCCTCCTGTTGCTGCTTCGGCCGCCCCAACACCTCCCACTC
CTACTCTTTCTCGATCCCCTCCTGTGTTCGTCTTTTCTCCCCTCCTCCCT
CCTCCTGCTGCCCGGGCTCGTGCTGCTGTGGTTGCTACCTGTATTATCAC
TTTCATTCGGCTGCTTCTGCTGCTTCGGCTGCCCTGATTCTTTTTCCTCT
TCCTCCTTCTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTC
CTCATCCTCCTGCTATTGCTCATCCTCCCCCTCCTCCGCCTCCTCCTCGT
CGTTGTCGGACCCTCTCGCTATTTTTACACAGCTCCGACGACGTGGTGGA
AAGAGGTGTGGCTACTGTGGGGAGACAGCAGGAACGGGGGGCTCTTTCCG
CTTCAGAGGCTTAA

Synonyms

Publications