jgi.p|Nanoce1779_2|580785, mRNA_2562 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580785
Unique NamemRNA_2562
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1185
Alignment locationscaffold_5:662150..663630 -

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Properties
Property NameValue
TranscriptId580871
TrackFilteredModels2
ProteinId580785
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:662150..663630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580785gene_2562Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580785mRNA_2562-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2562CDS_2562Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2562 ID=mRNA_2562|Name=jgi.p|Nanoce1779_2|580785|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp
AGCATTGCCGTTGGGGGAGCCGTTGGTGAAGCTCTCACGTTGGCATCGTG
CGGCCCTTACCGTGTGCCCAACCTGCTGTCAACTAGACGCTTGCTTAAGG
CGAGCAACAAGAAGGCGCGCAATACCATGCTGCGAATTGGTGGGCCGCCT
GCGCGACCTTTTGGTGCCGGTCGAAGAGGGGCGCCAGGAGATGGTGCATT
TTTATTCGGGAGAAATGCGAAGACGCGAGTCAATCGCCTATTTACCGTCC
ACGCTTTGATTATGTTGGCTGTGGGGCTGGTGAGTGCCTCTTTCCCCGAA
GTCCTTGTTTACATCCTCCACCACAATGCCGAGGGATTCCACGCACGCCA
CGAAGGCGGTGCTGCACGCATCGCGTTTGTAACCATGAGAGTCTTTGGTT
GCTTCCTGTTGGCCCAAGCGTACGTACTTTACGTCGTGAGGACCGTCTCG
GACGGCACCATGCGTCGGGCTGTGGTTCAAAGCTATTTCGTGGCTTTTTT
TCTCACGACGATAGCTTTAACGCGGGCTCAGCTCACAGAGGACATGCCTG
TACGTACAAGCAACTGGCTGGTTATTTCAATATTTGCGGTGCTCACAGCA
GCCTACGCTTGGTATTCGTTCTTTGAGCGGATAAGCGTTTTCGAGCTGGG
ACGATGAAGCCTTGGAGAGAGAGGAAGAGCTTGAAGAAGCGAAAAGGAGG
GAATGTACAGGCACAATTTGCAAGTAATTTAAAGCATCAAGATAAGTAAC
ACAAGCATGCTATTCTCTTTATTGGTGCGTAGATTACTTACTTTAGCGCT
CTGCCTTTCTTCCTTTTCCCCCCTGCGGACCCTCCCGTGGGTCCTGGTGC
TCCCACGTTCGTCTGCGATTTGATGCTGTTGGCAATACCATGGGCCGCGT
ATTTCGGTACTTGGACACGCTTCCTCTTAATATCTCCTATCGTACCATTC
TTCTTGGTTTCCCCCTCTTCCACTACTTCCTCTTTCATGCCATCGACGTC
TGCACCCTTCACGACCACGCTGTCGTCCAAGACAGAGAAAAAGAACGAGG
AGGCAGCAGGCAGGGCCATCCCATCCTCCTTCCTGCCCGGCACAAAAACT
GAGCCATCGCCCTCCCCTCCCGTGCTGTACTTCTTCAAAGGCTGCATTGG
CGCAGGCAGCACAGTCTTCGGTAGCATCTCCAGAA
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protein sequence of jgi.p|Nanoce1779_2|580785

>mRNA_2562-protein ID=mRNA_2562-protein|Name=jgi.p|Nanoce1779_2|580785|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MLRIGGPPARPFGAGRRGAPGDGAFLFGRNAKTRVNRLFTVHALIMLAVG
LVSASFPEVLVYILHHNAEGFHARHEGGAARIAFVTMRVFGCFLLAQAYV
LYVVRTVSDGTMRRAVVQSYFVAFFLTTIALTRAQLTEDMPVRTSNWLVI
SIFAVLTAAYAWYSFFERISVFELGR*
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mRNA from alignment at scaffold_5:662150..663630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2562 ID=mRNA_2562|Name=jgi.p|Nanoce1779_2|580785|organism=Nannochloropsis oceanica|type=mRNA|length=1481bp|location=Sequence derived from alignment at scaffold_5:662150..663630- (Nannochloropsis oceanica)
AGCATTGCCGTTGGGGGAGCCGTTGGTGAAGCTCTCACGTTGGCATCGTG
CGGCCCTTACCGTGTGCCCAACCTGCTGTCAACTAGACGCTTGCTTAAGG
TGAGTAGGAATTGGTCGCACATAAAATTTGAAATCGATGATCCTGTTTGT
AAAGAAAGCAAACATTAATTGAATCGGGCCCCGCCATCGGGAAAGAGAGA
TCTTCTCTGAGACAGTCACTGCCTTCTTTTCTTTCTCTTCGAGGGGAGAA
TTTATAATGCCTTGTTGTTCACCATCAGCCACGAAGTCGCTGAGCAAACC
CCAGTCTCAGAAGGCACCTTCTTGATCACAGCACTGAATTCCTGGAATCG
TCAAGTCCCTTTTAACACTCTGACCAACCCATGGCTTCACCACAGGCGAG
CAACAAGAAGGCGCGCAATACCATGCTGCGAATTGGTGGGCCGCCTGCGC
GACCTTTTGGTGCCGGTCGAAGAGGGGCGCCAGGAGATGGTGCATTTTTA
TTCGGGAGAAATGCGAAGACGCGAGTCAATCGCCTATTTACCGTCCACGC
TTTGATTATGTTGGCTGTGGGGCTGGTGAGTGCCTCTTTCCCCGAAGTCC
TTGTTTACATCCTCCACCACAATGCCGAGGGATTCCACGCACGCCACGAA
GGCGGTGCTGCACGCATCGCGTTTGTAACCATGAGAGTCTTTGGTTGCTT
CCTGTTGGCCCAAGCGTACGTACTTTACGTCGTGAGGACCGTCTCGGACG
GCACCATGCGTCGGGCTGTGGTTCAAAGCTATTTCGTGGCTTTTTTTCTC
ACGACGATAGCTTTAACGCGGGCTCAGCTCACAGAGGACATGCCTGTACG
TACAAGCAACTGGCTGGTTATTTCAATATTTGCGGTGCTCACAGCAGCCT
ACGCTTGGTATTCGTTCTTTGAGCGGATAAGCGTTTTCGAGCTGGGACGA
TGAAGCCTTGGAGAGAGAGGAAGAGCTTGAAGAAGCGAAAAGGAGGGAAT
GTACAGGCACAATTTGCAAGTAATTTAAAGCATCAAGATAAGTAACACAA
GCATGCTATTCTCTTTATTGGTGCGTAGATTACTTACTTTAGCGCTCTGC
CTTTCTTCCTTTTCCCCCCTGCGGACCCTCCCGTGGGTCCTGGTGCTCCC
ACGTTCGTCTGCGATTTGATGCTGTTGGCAATACCATGGGCCGCGTATTT
CGGTACTTGGACACGCTTCCTCTTAATATCTCCTATCGTACCATTCTTCT
TGGTTTCCCCCTCTTCCACTACTTCCTCTTTCATGCCATCGACGTCTGCA
CCCTTCACGACCACGCTGTCGTCCAAGACAGAGAAAAAGAACGAGGAGGC
AGCAGGCAGGGCCATCCCATCCTCCTTCCTGCCCGGCACAAAAACTGAGC
CATCGCCCTCCCCTCCCGTGCTGTACTTCTTCAAAGGCTGCATTGGCGCA
GGCAGCACAGTCTTCGGTAGCATCTCCAGAA
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Coding sequence (CDS) from alignment at scaffold_5:662150..663630-

>mRNA_2562 ID=mRNA_2562|Name=jgi.p|Nanoce1779_2|580785|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_5:662150..663630- (Nannochloropsis oceanica)
ATGCTGCGAATTGGTGGGCCGCCTGCGCGACCTTTTGGTGCCGGTCGAAG
AGGGGCGCCAGGAGATGGTGCATTTTTATTCGGGAGAAATGCGAAGACGC
GAGTCAATCGCCTATTTACCGTCCACGCTTTGATTATGTTGGCTGTGGGG
CTGGTGAGTGCCTCTTTCCCCGAAGTCCTTGTTTACATCCTCCACCACAA
TGCCGAGGGATTCCACGCACGCCACGAAGGCGGTGCTGCACGCATCGCGT
TTGTAACCATGAGAGTCTTTGGTTGCTTCCTGTTGGCCCAAGCGTACGTA
CTTTACGTCGTGAGGACCGTCTCGGACGGCACCATGCGTCGGGCTGTGGT
TCAAAGCTATTTCGTGGCTTTTTTTCTCACGACGATAGCTTTAACGCGGG
CTCAGCTCACAGAGGACATGCCTGTACGTACAAGCAACTGGCTGGTTATT
TCAATATTTGCGGTGCTCACAGCAGCCTACGCTTGGTATTCGTTCTTTGA
GCGGATAAGCGTTTTCGAGCTGGGACGATGA
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Synonyms
Publications