jgi.p|Nanoce1779_2|525172, mRNA_2561 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|525172
Unique Name	mRNA_2561
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1497
Alignment location	scaffold_5:660710..662547 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	525258
Track	FilteredModels2
ProteinId	525172

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:660710..662547 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|525172	gene_2561	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|525172	mRNA_2561-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2561	CDS_2561	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:660710..662547+
coding sequence from alignment at scaffold_5:660710..662547+

mRNA sequence

>mRNA_2561 ID=mRNA_2561|Name=jgi.p|Nanoce1779_2|525172|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp
ATGCATGACGACAGCCTGGGCTGCAGCAATGTGGCCGCAGTAGCTTTGAT
TGTGGTGGCGGCCTGCCCCAAAGAGCGGGCTCTGCGGGTGTTGGACTTTG
CCACGGGCACCACATACTTTACCTTCGCAGACACAGCGGCGACTGCGCTT
GTCCCTGTGGCCGGGGCGCGGGCCGCGGAAGGGTTGGGCAGTGCGGGAGA
CTATCTTATGTCCAGCCAAAATAATGAACAAGCACTGGTATTTCATCGGT
GGGGCAAGACACAGCCGCTCTTTAAGTGCCGCACGCCGGAGACGATGGGA
CCTATCGTGTCCACCCCGGATGGGCTCTACGTGCTTGCGGGAGGGCGGTC
AGGCAAGGCATACGCATGGGAGGTTGCCTCAGGATTGCTTGTACAGTCCT
GGGACGCACACTTTAAGTCTGTAACTTGCATGACTCTTACGAGCGACGGG
GGGTTCTTGATCACGGGCTCGGAGGACACCATGGTGCGGGCATGGGCTAT
GGCGGACGTGCTGGCGGCTGGCAAAACAATGGGCGAAAGAGTGGGAGCAG
GCGGCGTCCAACCGTTCCGCTCCTGGTCCTCGCACTCCTTGCCCGTCACC
AGTCTGTATTGTGGCTATGGTGGGCCCAGCTGCCGCATCGTATCCTGTTC
CTTGGATCACACCGTGCAAGTCTACGAGCTAGCAAACGAGATGGGGCCTG
TCTGCTCGCTACGGGCGCCCTCGAGCCTGGCGTGTGTGACGATGGACGCG
GGAGAGAAACGCTTGCTGGTAGGGGGGGCCCTGGGGGACATATTTTTGGT
GGACATGGATGTGGTGAGCCAAGCGCGCACGGCAAGTCGGGCCTTGGTCC
ACGCCGTCGGCGGGGTTGGCAGTCAGCAGCAGGGAAGGAGTGGAGATGAG
ATGTGGGACATGTTGGCGGGGCACAGCAAGGCGGTGACATCGTTGGTTTG
CTCGTGGGATGGCCGGATGACGATTTCGGCTTCTGAGGACGGGAGTTTAC
GGTGGTGGGATGTGGATAGTCAGCAGTGTGTGAAAAAGGTGAGTTTGGAT
ACCCCTGGTCCTATCACAGGCTTGCTCCTCTTGCCTCGTCCTACGGCTCT
TCTGGAGATGCTACCGAAGACTGTGCTGCCTGCGCCAATGCAGCCTTTGA
AGAAGTACAGCACGGGAGGGGAGGGCGATGGCTCAGTTTTTGTGCCGGGC
AGGAAGGAGGATGGGATGGCCCTGCCTGCTGCCTCCTCGTTCTTTTTCTC
TGTCTTGGACGACAGCGTGGTCGTGAAGGGTGCAGACGTCGATGGCATGA
AAGAGGAAGTAGTGGAAGAGGGGGAAACCAAGAAGAATGGTACGATAGGA
GATATTAAGAGGAAGCGTGTCCAAGTACCGAAATACGCGGCCCATGGTAT
TGCCAACAGCATCAAATCGCAGACGAACGTGGGAGCACCAGGACCCACGG
GAGGGTCCGCAGGGGGGAAAAGGAAGAAAGGCAGAGCGCTAAAGTAA

protein sequence of jgi.p|Nanoce1779_2|525172

>mRNA_2561-protein ID=mRNA_2561-protein|Name=jgi.p|Nanoce1779_2|525172|organism=Nannochloropsis oceanica|type=polypeptide|length=499bp
MHDDSLGCSNVAAVALIVVAACPKERALRVLDFATGTTYFTFADTAATAL
VPVAGARAAEGLGSAGDYLMSSQNNEQALVFHRWGKTQPLFKCRTPETMG
PIVSTPDGLYVLAGGRSGKAYAWEVASGLLVQSWDAHFKSVTCMTLTSDG
GFLITGSEDTMVRAWAMADVLAAGKTMGERVGAGGVQPFRSWSSHSLPVT
SLYCGYGGPSCRIVSCSLDHTVQVYELANEMGPVCSLRAPSSLACVTMDA
GEKRLLVGGALGDIFLVDMDVVSQARTASRALVHAVGGVGSQQQGRSGDE
MWDMLAGHSKAVTSLVCSWDGRMTISASEDGSLRWWDVDSQQCVKKVSLD
TPGPITGLLLLPRPTALLEMLPKTVLPAPMQPLKKYSTGGEGDGSVFVPG
RKEDGMALPAASSFFFSVLDDSVVVKGADVDGMKEEVVEEGETKKNGTIG
DIKRKRVQVPKYAAHGIANSIKSQTNVGAPGPTGGSAGGKRKKGRALK*

mRNA from alignment at scaffold_5:660710..662547+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2561 ID=mRNA_2561|Name=jgi.p|Nanoce1779_2|525172|organism=Nannochloropsis oceanica|type=mRNA|length=1838bp|location=Sequence derived from alignment at scaffold_5:660710..662547+ (Nannochloropsis oceanica)
ATGCATGACGACAGCCTGGGCTGCAGCAATGTGGCCGCAGTAGCTTTGAT
TGTGGTGGCGGCCTGCCCCAAAGAGCGGGCTCTGCGGGTGTTGGACTTTG
CCACGGGCACCACATACTTTACCTTCGCAGACACAGCGGCGACTGCGCTT
GTCCCTGTGGCCGGGGCGCGGGCCGCGGAAGGGTTGGGCAGTGCGGGAGA
CTATCTTATGTCCAGCCAAAATAATGAACAAGCACTGGTATTTCATCGGT
GGGGCAAGACACAGCCGCTCTTTAAGTGCCGCACGCCGGAGACGATGGGA
CCTATCGTGTCCACCCCGGATGGGCTCTACGTGCTTGCGGGAGGGCGGTC
AGGCAAGGCATACGCATGGGAGGTTGCCTCAGGATTGCTTGTACAGTCCT
GGGACGCACACTTTAAGTCTGTAACTTGCATGACTCTTACGAGCGACGGG
GGGTTCTTGATCACGGGCTCGGAGGACACCATGGTGCGGGCATGGGCTAT
GGCGGACGTGCTGGCGGCTGGCAAAACAATGGGCGAAAGAGTGGGAGCAG
GTAAGAATTTCTATAAATTAAACCTGTGCCAACTGATACTTCTCTCCTCT
TTCTCTTCCTCGTACTGAGTGGCCGACGATTGCATTTGTTTCTTTCACTT
GATGTGGGCAGGGAGGAGGAAAACGACCACGGGATGCGAATGCGCATTTT
TGCGAATTCTTGACTTTCCATGAGAGTTTAAATTAAACTGATATAATGAG
GCTGATGGTCCGTCTCGCCTTCTTGCTAAAATCTACATGTTATCGGTGTG
CATGCATATCTGTACTTGTCTTTCTCCAGTCCTCTCTTCATAAATTCTAA
CGTCATTGCCTCTCCCTCTCCTCCTCCATCACTCCACCTAGGCGGCGTCC
AACCGTTCCGCTCCTGGTCCTCGCACTCCTTGCCCGTCACCAGTCTGTAT
TGTGGCTATGGTGGGCCCAGCTGCCGCATCGTATCCTGTTCCTTGGATCA
CACCGTGCAAGTCTACGAGCTAGCAAACGAGATGGGGCCTGTCTGCTCGC
TACGGGCGCCCTCGAGCCTGGCGTGTGTGACGATGGACGCGGGAGAGAAA
CGCTTGCTGGTAGGGGGGGCCCTGGGGGACATATTTTTGGTGGACATGGA
TGTGGTGAGCCAAGCGCGCACGGCAAGTCGGGCCTTGGTCCACGCCGTCG
GCGGGGTTGGCAGTCAGCAGCAGGGAAGGAGTGGAGATGAGATGTGGGAC
ATGTTGGCGGGGCACAGCAAGGCGGTGACATCGTTGGTTTGCTCGTGGGA
TGGCCGGATGACGATTTCGGCTTCTGAGGACGGGAGTTTACGGTGGTGGG
ATGTGGATAGTCAGCAGTGTGTGAAAAAGGTGAGTTTGGATACCCCTGGT
CCTATCACAGGCTTGCTCCTCTTGCCTCGTCCTACGGCTCTTCTGGAGAT
GCTACCGAAGACTGTGCTGCCTGCGCCAATGCAGCCTTTGAAGAAGTACA
GCACGGGAGGGGAGGGCGATGGCTCAGTTTTTGTGCCGGGCAGGAAGGAG
GATGGGATGGCCCTGCCTGCTGCCTCCTCGTTCTTTTTCTCTGTCTTGGA
CGACAGCGTGGTCGTGAAGGGTGCAGACGTCGATGGCATGAAAGAGGAAG
TAGTGGAAGAGGGGGAAACCAAGAAGAATGGTACGATAGGAGATATTAAG
AGGAAGCGTGTCCAAGTACCGAAATACGCGGCCCATGGTATTGCCAACAG
CATCAAATCGCAGACGAACGTGGGAGCACCAGGACCCACGGGAGGGTCCG
CAGGGGGGAAAAGGAAGAAAGGCAGAGCGCTAAAGTAA

Coding sequence (CDS) from alignment at scaffold_5:660710..662547+

>mRNA_2561 ID=mRNA_2561|Name=jgi.p|Nanoce1779_2|525172|organism=Nannochloropsis oceanica|type=CDS|length=2994bp|location=Sequence derived from alignment at scaffold_5:660710..662547+ (Nannochloropsis oceanica)
ATGCATGACGACAGCCTGGGCTGCAGCAATGTGGCCGCAGTAGCTTTGAT
TGTGGTGGCGGCCTGCCCCAAAGAGCGGGCTCTGCGGGTGTTGGACTTTG
CCACGGGCACCACATACTTTACCTTCGCAGACACAGCGGCGACTGCGCTT
GTCCCTGTGGCCGGGGCGCGGGCCGCGGAAGGGTTGGGCAGTGCGGGAGA
CTATCTTATGTCCAGCCAAAATAATGAACAAGCACTGGTATTTCATCGGT
GGGGCAAGACACAGCCGCTCTTTAAGTGCCGCACGCCGGAGACGATGGGA
CCTATCGTGTCCACCCCGGATGGGCTCTACGTGCTTGCGGGAGGGCGGTC
AGGCAAGGCATACGCATGGGAGGTTGCCTCAGGATTGCTTGTACAGTCCT
GGGACGCACACTTTAAGTCTGTAACTTGCATGACTCTTACGAGCGACGGG
GGGTTCTTGATCACGGGCTCGGAGGACACCATGGTGCGGGCATGGGCTAT
GGCGGACGTGCTGGCGGCTGGCAAAACAATGGGCGAAAGAGTGGGAGCAG
GCGGCGTCCAACCGTTCCGCTCCTGGTCCTCGCACTCCTTGCCCGTCACC
AGTCTGTATTGTGGCTATGGTGGGCCCAGCTGCCGCATCGTATCCTGTTC
CTTGGATCACACCGTGCAAGTCTACGAGCTAGCAAACGAGATGGGGCCTG
TCTGCTCGCTACGGGCGCCCTCGAGCCTGGCGTGTGTGACGATGGACGCG
GGAGAGAAACGCTTGCTGGTAGGGGGGGCCCTGGGGGACATATTTTTGGT
GGACATGGATGTGGTGAGCCAAGCGCGCACGGCAAGTCGGGCCTTGGTCC
ACGCCGTCGGCGGGGTTGGCAGTCAGCAGCAGGGAAGGAGTGGAGATGAG
ATGTGGGACATGTTGGCGGGGCACAGCAAGGCGGTGACATCGTTGGTTTG
CTCGTGGGATGGCCGGATGACGATTTCGGCTTCTGAGGACGGGAGTTTAC
GGTGGTGGGATGTGGATAGTCAGCAGTGTGTGAAAAAGGTGAGTTTGGAT
ACCCCTGGTCCTATCACAGGCTTGCTCCTCTTGCCTCGTCCTACGGCTCT
TCTGGAGATGCTACCGAAGACTGTGCTGCCTGCGCCAATGCAGCCTTTGA
AGAAGTACAGCACGGGAGGGGAGGGCGATGGCTCAGTTTTTGTGCCGGGC
AGGAAGGAGGATGGGATGGCCCTGCCTGCTGCCTCCTCGTTCTTTTTCTC
TGTCTTGGACGACAGCGTGGTCGTGAAGGGTGCAGACGTCGATGGCATGA
AAGAGGAAGTAGTGGAAGAGGGGGAAACCAAGAAGAATGGTACGATAGGA
GATATTAAGAGGAAGCGTGTCCAAGTACCGAAATACGCGGCCCATGGTAT
TGCCAACAGCATCAAATCGCAGACGAACGTGGGAGCACCAGGACCCACGG
GAGGGTCCGCAGGGGGGAAAAGGAAGAAAGGCAGAGCGCTAAAGTAAATG
CATGACGACAGCCTGGGCTGCAGCAATGTGGCCGCAGTAGCTTTGATTGT
GGTGGCGGCCTGCCCCAAAGAGCGGGCTCTGCGGGTGTTGGACTTTGCCA
CGGGCACCACATACTTTACCTTCGCAGACACAGCGGCGACTGCGCTTGTC
CCTGTGGCCGGGGCGCGGGCCGCGGAAGGGTTGGGCAGTGCGGGAGACTA
TCTTATGTCCAGCCAAAATAATGAACAAGCACTGGTATTTCATCGGTGGG
GCAAGACACAGCCGCTCTTTAAGTGCCGCACGCCGGAGACGATGGGACCT
ATCGTGTCCACCCCGGATGGGCTCTACGTGCTTGCGGGAGGGCGGTCAGG
CAAGGCATACGCATGGGAGGTTGCCTCAGGATTGCTTGTACAGTCCTGGG
ACGCACACTTTAAGTCTGTAACTTGCATGACTCTTACGAGCGACGGGGGG
TTCTTGATCACGGGCTCGGAGGACACCATGGTGCGGGCATGGGCTATGGC
GGACGTGCTGGCGGCTGGCAAAACAATGGGCGAAAGAGTGGGAGCAGGCG
GCGTCCAACCGTTCCGCTCCTGGTCCTCGCACTCCTTGCCCGTCACCAGT
CTGTATTGTGGCTATGGTGGGCCCAGCTGCCGCATCGTATCCTGTTCCTT
GGATCACACCGTGCAAGTCTACGAGCTAGCAAACGAGATGGGGCCTGTCT
GCTCGCTACGGGCGCCCTCGAGCCTGGCGTGTGTGACGATGGACGCGGGA
GAGAAACGCTTGCTGGTAGGGGGGGCCCTGGGGGACATATTTTTGGTGGA
CATGGATGTGGTGAGCCAAGCGCGCACGGCAAGTCGGGCCTTGGTCCACG
CCGTCGGCGGGGTTGGCAGTCAGCAGCAGGGAAGGAGTGGAGATGAGATG
TGGGACATGTTGGCGGGGCACAGCAAGGCGGTGACATCGTTGGTTTGCTC
GTGGGATGGCCGGATGACGATTTCGGCTTCTGAGGACGGGAGTTTACGGT
GGTGGGATGTGGATAGTCAGCAGTGTGTGAAAAAGGTGAGTTTGGATACC
CCTGGTCCTATCACAGGCTTGCTCCTCTTGCCTCGTCCTACGGCTCTTCT
GGAGATGCTACCGAAGACTGTGCTGCCTGCGCCAATGCAGCCTTTGAAGA
AGTACAGCACGGGAGGGGAGGGCGATGGCTCAGTTTTTGTGCCGGGCAGG
AAGGAGGATGGGATGGCCCTGCCTGCTGCCTCCTCGTTCTTTTTCTCTGT
CTTGGACGACAGCGTGGTCGTGAAGGGTGCAGACGTCGATGGCATGAAAG
AGGAAGTAGTGGAAGAGGGGGAAACCAAGAAGAATGGTACGATAGGAGAT
ATTAAGAGGAAGCGTGTCCAAGTACCGAAATACGCGGCCCATGGTATTGC
CAACAGCATCAAATCGCAGACGAACGTGGGAGCACCAGGACCCACGGGAG
GGTCCGCAGGGGGGAAAAGGAAGAAAGGCAGAGCGCTAAAGTAA

Synonyms

Publications