jgi.p|Nanoce1779_2|628594, mRNA_2560 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628594
Unique NamemRNA_2560
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2370
Alignment locationscaffold_5:657880..660383 +

Link to JBrowse

Properties
Property NameValue
TranscriptId628680
TrackFilteredModels2
ProteinId628594
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:657880..660383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628594gene_2560Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628594mRNA_2560-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2560CDS_2560Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2560 ID=mRNA_2560|Name=jgi.p|Nanoce1779_2|628594|organism=Nannochloropsis oceanica|type=mRNA|length=2370bp
AAAACGATAGGTGACACACGCGCAGACGCAAGAGAGAAAATTGTGCTGGC
TGCCCACATCGCTGGGCCTTTTTGTGAGCTGCCTTAGCAAGAAGAGCATC
ATGCCATCTTCAGCAGCAACATAAAGTACTTGCAGGAAGTCCTTGCCCCT
CCCAACACGCTTAAGCACCTTACACTCCCTCCCCCTTCCCCAGCTTCCCA
AAATGCGTCGTCGGCGCCAAGACCCCATCTCTCTGCTGGCGGGATTAATT
GCGGAGAACCGCAAAGTAGCCGTGATAGTCGGTGCTGGACTTAGTGCCGC
GTCCGGCGTCCCAGTCTTTCGTGGTGACGACCCCAACGCCATTTGGGTGC
GGCGAGCTGCATCCATGGGGACCAAGGCTGCTTTTTTGCGTGACCCTTTG
GCATGGTACAACGAGTTTTGGTTTCCATTTTTCAAGCACGAGTACACGCG
CTACCTTCCCAATGCGGGGCACGAGGCGATCGCCCGTCTTACCAACCTCT
CCGCTGATCTCATGGTGGTAACCCAAAACATTGACTCGCTCCACCAACAA
ACCCAAGTGCAATGGGATCACGCGAAGCAACTGGTGGAGATTCACGGCCG
GCTTGGTTTGTACCGCTGCTCCAGCGACGAGTACTGCGTGCTGGCCAACG
AGATATACTTGAAGGCAGCCGATGTGTTTGGCCCCGCAGTGGCTGAGAAC
ATTCAAGGAGAGGGGGATGGTGCGGAAATGACCTCACCAGTGCGCGTGGA
TGATGTCCCGAAGTGCCCTGAGTGTCGTAAAGGATTCATGATGCCCTTGG
CATTAATGTTCGATGAGATGTACGATAGCCACGCCTTCTACCAGAGCGAT
AAAGCCATGTGTGCGTTTGAGAAAGCGGATGCGCTGGTTTTTATAGGCAC
GTCTTTTCAAGTCAACATAACGAATCTCGCCATCGAGGCCGGGCCCCGCA
AAAGAGGTATTCCGATTTTCAATTTCAATACACGGGACTGTCTATCCAAG
AGGGGAGGGAGGAGGTATGACGTGTACAATATCATCGGACCGGCGGAAGA
GACTGTTAACGAATTGATGAAGGAGGTGGAATCGAAGCTTGGACTGGGCA
ATGGAGTCGAAAAGGAAAAGGAAAGAGGGAAGGATAACGCGGGGCATTCC
GACCCGAGAACATCGAGCGGACGGAATATATCGATGGCCGTAAGCATGGA
TGCTACCGCAGTCTCAGTTCCCCTTACGGCAGATAGAGCCAGCAGTAGCA
GTGATAGCATCGGTATGGCTGTGGTTGCGGCCATTCATTGCAATCCCAGC
GATTCCTCCTCTTCCTCCTCTACTGCGGCCGACCCGTCTTACGCCTACGA
CACGGTACCACAACCCTGCCTCCCCCGCATGCTTTCGGAAGAAGAAGTCG
AGGTCGATTTTCGACCATGCTTCGGCCGCTTGCCCCATCCGGATCCAGAA
GTGGAGGGGCGCGTGGAGAGCACGTGGACCGAGCTGGCCAGGCAACGACA
GGCGGACGGATGGTCAGCTTTATTTAACGCCTCCAAATTTAGATTGGCTG
GATGCCGGGTGTTGGGAGGAGAAGGAGGAGGAGGAGGAGTTAGAGGTGAA
ATGGGAGGAGGAAGAGGAGGAGGGTGTGCTGTGCGGCTGGTGCTGGAGGT
CTGGTTGACGGATTACAAGACAGCGCGTGGTACCAACCACCATCCGGGCG
TAGCCATACTGCAGGCCGACGGCCGCGCCGCCCACGGCGACCCAGGCGCA
TACCTTTCTCAAAAGATGGGTGTGAGTGCTCTTCTGTATACCAGTGACGA
AGATCTGATCTTTATTTCACGCTCCGTCAAAGGCTGTGCAGATTTCCAAG
GCTTTATCGACACACCGGGAGGTCACCCTGAGCCATCAAACGTCAACCTG
GCCTTTCCACCTGTCCCATCCCCTGACTTAACCCAAGATGAAGCGGCCTC
GGTGCTGTTGCGTCGGAAAATTTGTCACGAAATATTTTCTTCCTCTGCTC
AGGAGGTGGCGGACGAGGTGGGCGTGCCGCTTGATAAGCTCGGGCCGCCC
AAGCTGCTTGGTCTGGTGAGGCAACTTGACTTTGGCAGTCTTCCAAGCGC
GACTTTTTTGGTTCAGTGTAATTGCAGCACCGCAGATGTCCATACGTACT
ATGTGTCAGGGCCTAAGGAAATCGACGAATCTACGGGGCTTGTTGTGGTC
AAGAAGAGTGAGCTGGTGACCTTCTTGGCGACGCCTGGAGTGAAGCTCGC
CCCTGCTGCTCGAGGGAGTCTGGCGCTATTTGCAGAGCATAACTTGTGCT
GAATGAATGACGACATCAAGAAGATCACGGGACCTGTGTAAATTGAATGA
ATGAAAATGATTTTTTGGTG
back to top

protein sequence of jgi.p|Nanoce1779_2|628594

>mRNA_2560-protein ID=mRNA_2560-protein|Name=jgi.p|Nanoce1779_2|628594|organism=Nannochloropsis oceanica|type=polypeptide|length=700bp
MRRRRQDPISLLAGLIAENRKVAVIVGAGLSAASGVPVFRGDDPNAIWVR
RAASMGTKAAFLRDPLAWYNEFWFPFFKHEYTRYLPNAGHEAIARLTNLS
ADLMVVTQNIDSLHQQTQVQWDHAKQLVEIHGRLGLYRCSSDEYCVLANE
IYLKAADVFGPAVAENIQGEGDGAEMTSPVRVDDVPKCPECRKGFMMPLA
LMFDEMYDSHAFYQSDKAMCAFEKADALVFIGTSFQVNITNLAIEAGPRK
RGIPIFNFNTRDCLSKRGGRRYDVYNIIGPAEETVNELMKEVESKLGLGN
GVEKEKERGKDNAGHSDPRTSSGRNISMAVSMDATAVSVPLTADRASSSS
DSIGMAVVAAIHCNPSDSSSSSSTAADPSYAYDTVPQPCLPRMLSEEEVE
VDFRPCFGRLPHPDPEVEGRVESTWTELARQRQADGWSALFNASKFRLAG
CRVLGGEGGGGGVRGEMGGGRGGGCAVRLVLEVWLTDYKTARGTNHHPGV
AILQADGRAAHGDPGAYLSQKMGVSALLYTSDEDLIFISRSVKGCADFQG
FIDTPGGHPEPSNVNLAFPPVPSPDLTQDEAASVLLRRKICHEIFSSSAQ
EVADEVGVPLDKLGPPKLLGLVRQLDFGSLPSATFLVQCNCSTADVHTYY
VSGPKEIDESTGLVVVKKSELVTFLATPGVKLAPAARGSLALFAEHNLC*
back to top

mRNA from alignment at scaffold_5:657880..660383+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2560 ID=mRNA_2560|Name=jgi.p|Nanoce1779_2|628594|organism=Nannochloropsis oceanica|type=mRNA|length=2504bp|location=Sequence derived from alignment at scaffold_5:657880..660383+ (Nannochloropsis oceanica)
AAAACGATAGGTGACACACGCGCAGACGCAAGAGAGAAAATTGTGCTGGC TGCCCACATCGCTGGGCCTTTTTGTGAGCTGCCTTAGCAAGAAGAGCATC ATGCCATCTTCAGCAGCAACATAAAGTACTTGCAGGAAGTCCTTGCCCCT CCCAACACGCTTAAGCACCTTACACTCCCTCCCCCTTCCCCAGCTTCCCA AAATGCGTCGTCGGCGCCAAGACCCCATCTCTCTGCTGGCGGGATTAATT GCGGAGAACCGCAAAGTAGCCGTGATAGTCGGTGCTGGACTTAGTGCCGC GTCCGGCGTCCCAGTCTTTCGTGGTGACGACCCCAACGCCATTTGGGTGC GGCGAGCTGCATCCATGGGGACCAAGGCTGCTTTTTTGCGTGACCCTTTG GCATGGTACAACGAGTTTTGGTTTCCATTTTTCAAGCACGAGTACACGCG CTACCTTCCCAATGCGGGGCACGAGGCGATCGCCCGTCTTACCAACCTCT CCGCTGATCTCATGGTGGTACGTCCCCTCTCCTCCCTTTGTCTTCATTTG ACCATCTTTCGCACGTGCCTTGAAAAGTGTTCTCTGACGTCCTACTCAGA ATTCACCCCTGCCACACTCCTTCCATTCCTTCCATCCCTTCACTTGTCCA GGTAACCCAAAACATTGACTCGCTCCACCAACAAACCCAAGTGCAATGGG ATCACGCGAAGCAACTGGTGGAGATTCACGGCCGGCTTGGTTTGTACCGC TGCTCCAGCGACGAGTACTGCGTGCTGGCCAACGAGATATACTTGAAGGC AGCCGATGTGTTTGGCCCCGCAGTGGCTGAGAACATTCAAGGAGAGGGGG ATGGTGCGGAAATGACCTCACCAGTGCGCGTGGATGATGTCCCGAAGTGC CCTGAGTGTCGTAAAGGATTCATGATGCCCTTGGCATTAATGTTCGATGA GATGTACGATAGCCACGCCTTCTACCAGAGCGATAAAGCCATGTGTGCGT TTGAGAAAGCGGATGCGCTGGTTTTTATAGGCACGTCTTTTCAAGTCAAC ATAACGAATCTCGCCATCGAGGCCGGGCCCCGCAAAAGAGGTATTCCGAT TTTCAATTTCAATACACGGGACTGTCTATCCAAGAGGGGAGGGAGGAGGT ATGACGTGTACAATATCATCGGACCGGCGGAAGAGACTGTTAACGAATTG ATGAAGGAGGTGGAATCGAAGCTTGGACTGGGCAATGGAGTCGAAAAGGA AAAGGAAAGAGGGAAGGATAACGCGGGGCATTCCGACCCGAGAACATCGA GCGGACGGAATATATCGATGGCCGTAAGCATGGATGCTACCGCAGTCTCA GTTCCCCTTACGGCAGATAGAGCCAGCAGTAGCAGTGATAGCATCGGTAT GGCTGTGGTTGCGGCCATTCATTGCAATCCCAGCGATTCCTCCTCTTCCT CCTCTACTGCGGCCGACCCGTCTTACGCCTACGACACGGTACCACAACCC TGCCTCCCCCGCATGCTTTCGGAAGAAGAAGTCGAGGTCGATTTTCGACC ATGCTTCGGCCGCTTGCCCCATCCGGATCCAGAAGTGGAGGGGCGCGTGG AGAGCACGTGGACCGAGCTGGCCAGGCAACGACAGGCGGACGGATGGTCA GCTTTATTTAACGCCTCCAAATTTAGATTGGCTGGATGCCGGGTGTTGGG AGGAGAAGGAGGAGGAGGAGGAGTTAGAGGTGAAATGGGAGGAGGAAGAG GAGGAGGGTGTGCTGTGCGGCTGGTGCTGGAGGTCTGGTTGACGGATTAC AAGACAGCGCGTGGTACCAACCACCATCCGGGCGTAGCCATACTGCAGGC CGACGGCCGCGCCGCCCACGGCGACCCAGGCGCATACCTTTCTCAAAAGA TGGGTGTGAGTGCTCTTCTGTATACCAGTGACGAAGATCTGATCTTTATT TCACGCTCCGTCAAAGGCTGTGCAGATTTCCAAGGCTTTATCGACACACC GGGAGGTCACCCTGAGCCATCAAACGTCAACCTGGCCTTTCCACCTGTCC CATCCCCTGACTTAACCCAAGATGAAGCGGCCTCGGTGCTGTTGCGTCGG AAAATTTGTCACGAAATATTTTCTTCCTCTGCTCAGGAGGTGGCGGACGA GGTGGGCGTGCCGCTTGATAAGCTCGGGCCGCCCAAGCTGCTTGGTCTGG TGAGGCAACTTGACTTTGGCAGTCTTCCAAGCGCGACTTTTTTGGTTCAG TGTAATTGCAGCACCGCAGATGTCCATACGTACTATGTGTCAGGGCCTAA GGAAATCGACGAATCTACGGGGCTTGTTGTGGTCAAGAAGAGTGAGCTGG TGACCTTCTTGGCGACGCCTGGAGTGAAGCTCGCCCCTGCTGCTCGAGGG AGTCTGGCGCTATTTGCAGAGCATAACTTGTGCTGAATGAATGACGACAT CAAGAAGATCACGGGACCTGTGTAAATTGAATGAATGAAAATGATTTTTT GGTG
back to top

Coding sequence (CDS) from alignment at scaffold_5:657880..660383+

>mRNA_2560 ID=mRNA_2560|Name=jgi.p|Nanoce1779_2|628594|organism=Nannochloropsis oceanica|type=CDS|length=4200bp|location=Sequence derived from alignment at scaffold_5:657880..660383+ (Nannochloropsis oceanica)
ATGCGTCGTCGGCGCCAAGACCCCATCTCTCTGCTGGCGGGATTAATTGC
GGAGAACCGCAAAGTAGCCGTGATAGTCGGTGCTGGACTTAGTGCCGCGT
CCGGCGTCCCAGTCTTTCGTGGTGACGACCCCAACGCCATTTGGGTGCGG
CGAGCTGCATCCATGGGGACCAAGGCTGCTTTTTTGCGTGACCCTTTGGC
ATGGTACAACGAGTTTTGGTTTCCATTTTTCAAGCACGAGTACACGCGCT
ACCTTCCCAATGCGGGGCACGAGGCGATCGCCCGTCTTACCAACCTCTCC
GCTGATCTCATGGTGGTAACCCAAAACATTGACTCGCTCCACCAACAAAC
CCAAGTGCAATGGGATCACGCGAAGCAACTGGTGGAGATTCACGGCCGGC
TTGGTTTGTACCGCTGCTCCAGCGACGAGTACTGCGTGCTGGCCAACGAG
ATATACTTGAAGGCAGCCGATGTGTTTGGCCCCGCAGTGGCTGAGAACAT
TCAAGGAGAGGGGGATGGTGCGGAAATGACCTCACCAGTGCGCGTGGATG
ATGTCCCGAAGTGCCCTGAGTGTCGTAAAGGATTCATGATGCCCTTGGCA
TTAATGTTCGATGAGATGTACGATAGCCACGCCTTCTACCAGAGCGATAA
AGCCATGTGTGCGTTTGAGAAAGCGGATGCGCTGGTTTTTATAGGCACGT
CTTTTCAAGTCAACATAACGAATCTCGCCATCGAGGCCGGGCCCCGCAAA
AGAGGTATTCCGATTTTCAATTTCAATACACGGGACTGTCTATCCAAGAG
GGGAGGGAGGAGGTATGACGTGTACAATATCATCGGACCGGCGGAAGAGA
CTGTTAACGAATTGATGAAGGAGGTGGAATCGAAGCTTGGACTGGGCAAT
GGAGTCGAAAAGGAAAAGGAAAGAGGGAAGGATAACGCGGGGCATTCCGA
CCCGAGAACATCGAGCGGACGGAATATATCGATGGCCGTAAGCATGGATG
CTACCGCAGTCTCAGTTCCCCTTACGGCAGATAGAGCCAGCAGTAGCAGT
GATAGCATCGGTATGGCTGTGGTTGCGGCCATTCATTGCAATCCCAGCGA
TTCCTCCTCTTCCTCCTCTACTGCGGCCGACCCGTCTTACGCCTACGACA
CGGTACCACAACCCTGCCTCCCCCGCATGCTTTCGGAAGAAGAAGTCGAG
GTCGATTTTCGACCATGCTTCGGCCGCTTGCCCCATCCGGATCCAGAAGT
GGAGGGGCGCGTGGAGAGCACGTGGACCGAGCTGGCCAGGCAACGACAGG
CGGACGGATGGTCAGCTTTATTTAACGCCTCCAAATTTAGATTGGCTGGA
TGCCGGGTGTTGGGAGGAGAAGGAGGAGGAGGAGGAGTTAGAGGTGAAAT
GGGAGGAGGAAGAGGAGGAGGGTGTGCTGTGCGGCTGGTGCTGGAGGTCT
GGTTGACGGATTACAAGACAGCGCGTGGTACCAACCACCATCCGGGCGTA
GCCATACTGCAGGCCGACGGCCGCGCCGCCCACGGCGACCCAGGCGCATA
CCTTTCTCAAAAGATGGGTGTGAGTGCTCTTCTGTATACCAGTGACGAAG
ATCTGATCTTTATTTCACGCTCCGTCAAAGGCTGTGCAGATTTCCAAGGC
TTTATCGACACACCGGGAGGTCACCCTGAGCCATCAAACGTCAACCTGGC
CTTTCCACCTGTCCCATCCCCTGACTTAACCCAAGATGAAGCGGCCTCGG
TGCTGTTGCGTCGGAAAATTTGTCACGAAATATTTTCTTCCTCTGCTCAG
GAGGTGGCGGACGAGGTGGGCGTGCCGCTTGATAAGCTCGGGCCGCCCAA
GCTGCTTGGTCTGGTGAGGCAACTTGACTTTGGCAGTCTTCCAAGCGCGA
CTTTTTTGGTTCAGTGTAATTGCAGCACCGCAGATGTCCATACGTACTAT
GTGTCAGGGCCTAAGGAAATCGACGAATCTACGGGGCTTGTTGTGGTCAA
GAAGAGTGAGCTGGTGACCTTCTTGGCGACGCCTGGAGTGAAGCTCGCCC
CTGCTGCTCGAGGGAGTCTGGCGCTATTTGCAGAGCATAACTTGTGCTGA
ATGCGTCGTCGGCGCCAAGACCCCATCTCTCTGCTGGCGGGATTAATTGC
GGAGAACCGCAAAGTAGCCGTGATAGTCGGTGCTGGACTTAGTGCCGCGT
CCGGCGTCCCAGTCTTTCGTGGTGACGACCCCAACGCCATTTGGGTGCGG
CGAGCTGCATCCATGGGGACCAAGGCTGCTTTTTTGCGTGACCCTTTGGC
ATGGTACAACGAGTTTTGGTTTCCATTTTTCAAGCACGAGTACACGCGCT
ACCTTCCCAATGCGGGGCACGAGGCGATCGCCCGTCTTACCAACCTCTCC
GCTGATCTCATGGTGGTAACCCAAAACATTGACTCGCTCCACCAACAAAC
CCAAGTGCAATGGGATCACGCGAAGCAACTGGTGGAGATTCACGGCCGGC
TTGGTTTGTACCGCTGCTCCAGCGACGAGTACTGCGTGCTGGCCAACGAG
ATATACTTGAAGGCAGCCGATGTGTTTGGCCCCGCAGTGGCTGAGAACAT
TCAAGGAGAGGGGGATGGTGCGGAAATGACCTCACCAGTGCGCGTGGATG
ATGTCCCGAAGTGCCCTGAGTGTCGTAAAGGATTCATGATGCCCTTGGCA
TTAATGTTCGATGAGATGTACGATAGCCACGCCTTCTACCAGAGCGATAA
AGCCATGTGTGCGTTTGAGAAAGCGGATGCGCTGGTTTTTATAGGCACGT
CTTTTCAAGTCAACATAACGAATCTCGCCATCGAGGCCGGGCCCCGCAAA
AGAGGTATTCCGATTTTCAATTTCAATACACGGGACTGTCTATCCAAGAG
GGGAGGGAGGAGGTATGACGTGTACAATATCATCGGACCGGCGGAAGAGA
CTGTTAACGAATTGATGAAGGAGGTGGAATCGAAGCTTGGACTGGGCAAT
GGAGTCGAAAAGGAAAAGGAAAGAGGGAAGGATAACGCGGGGCATTCCGA
CCCGAGAACATCGAGCGGACGGAATATATCGATGGCCGTAAGCATGGATG
CTACCGCAGTCTCAGTTCCCCTTACGGCAGATAGAGCCAGCAGTAGCAGT
GATAGCATCGGTATGGCTGTGGTTGCGGCCATTCATTGCAATCCCAGCGA
TTCCTCCTCTTCCTCCTCTACTGCGGCCGACCCGTCTTACGCCTACGACA
CGGTACCACAACCCTGCCTCCCCCGCATGCTTTCGGAAGAAGAAGTCGAG
GTCGATTTTCGACCATGCTTCGGCCGCTTGCCCCATCCGGATCCAGAAGT
GGAGGGGCGCGTGGAGAGCACGTGGACCGAGCTGGCCAGGCAACGACAGG
CGGACGGATGGTCAGCTTTATTTAACGCCTCCAAATTTAGATTGGCTGGA
TGCCGGGTGTTGGGAGGAGAAGGAGGAGGAGGAGGAGTTAGAGGTGAAAT
GGGAGGAGGAAGAGGAGGAGGGTGTGCTGTGCGGCTGGTGCTGGAGGTCT
GGTTGACGGATTACAAGACAGCGCGTGGTACCAACCACCATCCGGGCGTA
GCCATACTGCAGGCCGACGGCCGCGCCGCCCACGGCGACCCAGGCGCATA
CCTTTCTCAAAAGATGGGTGTGAGTGCTCTTCTGTATACCAGTGACGAAG
ATCTGATCTTTATTTCACGCTCCGTCAAAGGCTGTGCAGATTTCCAAGGC
TTTATCGACACACCGGGAGGTCACCCTGAGCCATCAAACGTCAACCTGGC
CTTTCCACCTGTCCCATCCCCTGACTTAACCCAAGATGAAGCGGCCTCGG
TGCTGTTGCGTCGGAAAATTTGTCACGAAATATTTTCTTCCTCTGCTCAG
GAGGTGGCGGACGAGGTGGGCGTGCCGCTTGATAAGCTCGGGCCGCCCAA
GCTGCTTGGTCTGGTGAGGCAACTTGACTTTGGCAGTCTTCCAAGCGCGA
CTTTTTTGGTTCAGTGTAATTGCAGCACCGCAGATGTCCATACGTACTAT
GTGTCAGGGCCTAAGGAAATCGACGAATCTACGGGGCTTGTTGTGGTCAA
GAAGAGTGAGCTGGTGACCTTCTTGGCGACGCCTGGAGTGAAGCTCGCCC
CTGCTGCTCGAGGGAGTCTGGCGCTATTTGCAGAGCATAACTTGTGCTGA
back to top
Synonyms
Publications