Properties
Property Name | Value |
TranscriptId | 628680 |
Track | FilteredModels2 |
ProteinId | 628594 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_5 | supercontig | scaffold_5:657880..660383 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2560 ID=mRNA_2560|Name=jgi.p|Nanoce1779_2|628594|organism=Nannochloropsis oceanica|type=mRNA|length=2370bp AAAACGATAGGTGACACACGCGCAGACGCAAGAGAGAAAATTGTGCTGGC TGCCCACATCGCTGGGCCTTTTTGTGAGCTGCCTTAGCAAGAAGAGCATC ATGCCATCTTCAGCAGCAACATAAAGTACTTGCAGGAAGTCCTTGCCCCT CCCAACACGCTTAAGCACCTTACACTCCCTCCCCCTTCCCCAGCTTCCCA AAATGCGTCGTCGGCGCCAAGACCCCATCTCTCTGCTGGCGGGATTAATT GCGGAGAACCGCAAAGTAGCCGTGATAGTCGGTGCTGGACTTAGTGCCGC GTCCGGCGTCCCAGTCTTTCGTGGTGACGACCCCAACGCCATTTGGGTGC GGCGAGCTGCATCCATGGGGACCAAGGCTGCTTTTTTGCGTGACCCTTTG GCATGGTACAACGAGTTTTGGTTTCCATTTTTCAAGCACGAGTACACGCG CTACCTTCCCAATGCGGGGCACGAGGCGATCGCCCGTCTTACCAACCTCT CCGCTGATCTCATGGTGGTAACCCAAAACATTGACTCGCTCCACCAACAA ACCCAAGTGCAATGGGATCACGCGAAGCAACTGGTGGAGATTCACGGCCG GCTTGGTTTGTACCGCTGCTCCAGCGACGAGTACTGCGTGCTGGCCAACG AGATATACTTGAAGGCAGCCGATGTGTTTGGCCCCGCAGTGGCTGAGAAC ATTCAAGGAGAGGGGGATGGTGCGGAAATGACCTCACCAGTGCGCGTGGA TGATGTCCCGAAGTGCCCTGAGTGTCGTAAAGGATTCATGATGCCCTTGG CATTAATGTTCGATGAGATGTACGATAGCCACGCCTTCTACCAGAGCGAT AAAGCCATGTGTGCGTTTGAGAAAGCGGATGCGCTGGTTTTTATAGGCAC GTCTTTTCAAGTCAACATAACGAATCTCGCCATCGAGGCCGGGCCCCGCA AAAGAGGTATTCCGATTTTCAATTTCAATACACGGGACTGTCTATCCAAG AGGGGAGGGAGGAGGTATGACGTGTACAATATCATCGGACCGGCGGAAGA GACTGTTAACGAATTGATGAAGGAGGTGGAATCGAAGCTTGGACTGGGCA ATGGAGTCGAAAAGGAAAAGGAAAGAGGGAAGGATAACGCGGGGCATTCC GACCCGAGAACATCGAGCGGACGGAATATATCGATGGCCGTAAGCATGGA TGCTACCGCAGTCTCAGTTCCCCTTACGGCAGATAGAGCCAGCAGTAGCA GTGATAGCATCGGTATGGCTGTGGTTGCGGCCATTCATTGCAATCCCAGC GATTCCTCCTCTTCCTCCTCTACTGCGGCCGACCCGTCTTACGCCTACGA CACGGTACCACAACCCTGCCTCCCCCGCATGCTTTCGGAAGAAGAAGTCG AGGTCGATTTTCGACCATGCTTCGGCCGCTTGCCCCATCCGGATCCAGAA GTGGAGGGGCGCGTGGAGAGCACGTGGACCGAGCTGGCCAGGCAACGACA GGCGGACGGATGGTCAGCTTTATTTAACGCCTCCAAATTTAGATTGGCTG GATGCCGGGTGTTGGGAGGAGAAGGAGGAGGAGGAGGAGTTAGAGGTGAA ATGGGAGGAGGAAGAGGAGGAGGGTGTGCTGTGCGGCTGGTGCTGGAGGT CTGGTTGACGGATTACAAGACAGCGCGTGGTACCAACCACCATCCGGGCG TAGCCATACTGCAGGCCGACGGCCGCGCCGCCCACGGCGACCCAGGCGCA TACCTTTCTCAAAAGATGGGTGTGAGTGCTCTTCTGTATACCAGTGACGA AGATCTGATCTTTATTTCACGCTCCGTCAAAGGCTGTGCAGATTTCCAAG GCTTTATCGACACACCGGGAGGTCACCCTGAGCCATCAAACGTCAACCTG GCCTTTCCACCTGTCCCATCCCCTGACTTAACCCAAGATGAAGCGGCCTC GGTGCTGTTGCGTCGGAAAATTTGTCACGAAATATTTTCTTCCTCTGCTC AGGAGGTGGCGGACGAGGTGGGCGTGCCGCTTGATAAGCTCGGGCCGCCC AAGCTGCTTGGTCTGGTGAGGCAACTTGACTTTGGCAGTCTTCCAAGCGC GACTTTTTTGGTTCAGTGTAATTGCAGCACCGCAGATGTCCATACGTACT ATGTGTCAGGGCCTAAGGAAATCGACGAATCTACGGGGCTTGTTGTGGTC AAGAAGAGTGAGCTGGTGACCTTCTTGGCGACGCCTGGAGTGAAGCTCGC CCCTGCTGCTCGAGGGAGTCTGGCGCTATTTGCAGAGCATAACTTGTGCT GAATGAATGACGACATCAAGAAGATCACGGGACCTGTGTAAATTGAATGA ATGAAAATGATTTTTTGGTG back to topprotein sequence of jgi.p|Nanoce1779_2|628594 >mRNA_2560-protein ID=mRNA_2560-protein|Name=jgi.p|Nanoce1779_2|628594|organism=Nannochloropsis oceanica|type=polypeptide|length=700bp MRRRRQDPISLLAGLIAENRKVAVIVGAGLSAASGVPVFRGDDPNAIWVR RAASMGTKAAFLRDPLAWYNEFWFPFFKHEYTRYLPNAGHEAIARLTNLS ADLMVVTQNIDSLHQQTQVQWDHAKQLVEIHGRLGLYRCSSDEYCVLANE IYLKAADVFGPAVAENIQGEGDGAEMTSPVRVDDVPKCPECRKGFMMPLA LMFDEMYDSHAFYQSDKAMCAFEKADALVFIGTSFQVNITNLAIEAGPRK RGIPIFNFNTRDCLSKRGGRRYDVYNIIGPAEETVNELMKEVESKLGLGN GVEKEKERGKDNAGHSDPRTSSGRNISMAVSMDATAVSVPLTADRASSSS DSIGMAVVAAIHCNPSDSSSSSSTAADPSYAYDTVPQPCLPRMLSEEEVE VDFRPCFGRLPHPDPEVEGRVESTWTELARQRQADGWSALFNASKFRLAG CRVLGGEGGGGGVRGEMGGGRGGGCAVRLVLEVWLTDYKTARGTNHHPGV AILQADGRAAHGDPGAYLSQKMGVSALLYTSDEDLIFISRSVKGCADFQG FIDTPGGHPEPSNVNLAFPPVPSPDLTQDEAASVLLRRKICHEIFSSSAQ EVADEVGVPLDKLGPPKLLGLVRQLDFGSLPSATFLVQCNCSTADVHTYY VSGPKEIDESTGLVVVKKSELVTFLATPGVKLAPAARGSLALFAEHNLC* back to topmRNA from alignment at scaffold_5:657880..660383+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2560 ID=mRNA_2560|Name=jgi.p|Nanoce1779_2|628594|organism=Nannochloropsis oceanica|type=mRNA|length=2504bp|location=Sequence derived from alignment at scaffold_5:657880..660383+ (Nannochloropsis oceanica) AAAACGATAGGTGACACACGCGCAGACGCAAGAGAGAAAATTGTGCTGGC
TGCCCACATCGCTGGGCCTTTTTGTGAGCTGCCTTAGCAAGAAGAGCATC
ATGCCATCTTCAGCAGCAACATAAAGTACTTGCAGGAAGTCCTTGCCCCT
CCCAACACGCTTAAGCACCTTACACTCCCTCCCCCTTCCCCAGCTTCCCA
AAATGCGTCGTCGGCGCCAAGACCCCATCTCTCTGCTGGCGGGATTAATT
GCGGAGAACCGCAAAGTAGCCGTGATAGTCGGTGCTGGACTTAGTGCCGC
GTCCGGCGTCCCAGTCTTTCGTGGTGACGACCCCAACGCCATTTGGGTGC
GGCGAGCTGCATCCATGGGGACCAAGGCTGCTTTTTTGCGTGACCCTTTG
GCATGGTACAACGAGTTTTGGTTTCCATTTTTCAAGCACGAGTACACGCG
CTACCTTCCCAATGCGGGGCACGAGGCGATCGCCCGTCTTACCAACCTCT
CCGCTGATCTCATGGTGGTACGTCCCCTCTCCTCCCTTTGTCTTCATTTG
ACCATCTTTCGCACGTGCCTTGAAAAGTGTTCTCTGACGTCCTACTCAGA
ATTCACCCCTGCCACACTCCTTCCATTCCTTCCATCCCTTCACTTGTCCA
GGTAACCCAAAACATTGACTCGCTCCACCAACAAACCCAAGTGCAATGGG
ATCACGCGAAGCAACTGGTGGAGATTCACGGCCGGCTTGGTTTGTACCGC
TGCTCCAGCGACGAGTACTGCGTGCTGGCCAACGAGATATACTTGAAGGC
AGCCGATGTGTTTGGCCCCGCAGTGGCTGAGAACATTCAAGGAGAGGGGG
ATGGTGCGGAAATGACCTCACCAGTGCGCGTGGATGATGTCCCGAAGTGC
CCTGAGTGTCGTAAAGGATTCATGATGCCCTTGGCATTAATGTTCGATGA
GATGTACGATAGCCACGCCTTCTACCAGAGCGATAAAGCCATGTGTGCGT
TTGAGAAAGCGGATGCGCTGGTTTTTATAGGCACGTCTTTTCAAGTCAAC
ATAACGAATCTCGCCATCGAGGCCGGGCCCCGCAAAAGAGGTATTCCGAT
TTTCAATTTCAATACACGGGACTGTCTATCCAAGAGGGGAGGGAGGAGGT
ATGACGTGTACAATATCATCGGACCGGCGGAAGAGACTGTTAACGAATTG
ATGAAGGAGGTGGAATCGAAGCTTGGACTGGGCAATGGAGTCGAAAAGGA
AAAGGAAAGAGGGAAGGATAACGCGGGGCATTCCGACCCGAGAACATCGA
GCGGACGGAATATATCGATGGCCGTAAGCATGGATGCTACCGCAGTCTCA
GTTCCCCTTACGGCAGATAGAGCCAGCAGTAGCAGTGATAGCATCGGTAT
GGCTGTGGTTGCGGCCATTCATTGCAATCCCAGCGATTCCTCCTCTTCCT
CCTCTACTGCGGCCGACCCGTCTTACGCCTACGACACGGTACCACAACCC
TGCCTCCCCCGCATGCTTTCGGAAGAAGAAGTCGAGGTCGATTTTCGACC
ATGCTTCGGCCGCTTGCCCCATCCGGATCCAGAAGTGGAGGGGCGCGTGG
AGAGCACGTGGACCGAGCTGGCCAGGCAACGACAGGCGGACGGATGGTCA
GCTTTATTTAACGCCTCCAAATTTAGATTGGCTGGATGCCGGGTGTTGGG
AGGAGAAGGAGGAGGAGGAGGAGTTAGAGGTGAAATGGGAGGAGGAAGAG
GAGGAGGGTGTGCTGTGCGGCTGGTGCTGGAGGTCTGGTTGACGGATTAC
AAGACAGCGCGTGGTACCAACCACCATCCGGGCGTAGCCATACTGCAGGC
CGACGGCCGCGCCGCCCACGGCGACCCAGGCGCATACCTTTCTCAAAAGA
TGGGTGTGAGTGCTCTTCTGTATACCAGTGACGAAGATCTGATCTTTATT
TCACGCTCCGTCAAAGGCTGTGCAGATTTCCAAGGCTTTATCGACACACC
GGGAGGTCACCCTGAGCCATCAAACGTCAACCTGGCCTTTCCACCTGTCC
CATCCCCTGACTTAACCCAAGATGAAGCGGCCTCGGTGCTGTTGCGTCGG
AAAATTTGTCACGAAATATTTTCTTCCTCTGCTCAGGAGGTGGCGGACGA
GGTGGGCGTGCCGCTTGATAAGCTCGGGCCGCCCAAGCTGCTTGGTCTGG
TGAGGCAACTTGACTTTGGCAGTCTTCCAAGCGCGACTTTTTTGGTTCAG
TGTAATTGCAGCACCGCAGATGTCCATACGTACTATGTGTCAGGGCCTAA
GGAAATCGACGAATCTACGGGGCTTGTTGTGGTCAAGAAGAGTGAGCTGG
TGACCTTCTTGGCGACGCCTGGAGTGAAGCTCGCCCCTGCTGCTCGAGGG
AGTCTGGCGCTATTTGCAGAGCATAACTTGTGCTGAATGAATGACGACAT
CAAGAAGATCACGGGACCTGTGTAAATTGAATGAATGAAAATGATTTTTT
GGTG back to topCoding sequence (CDS) from alignment at scaffold_5:657880..660383+ >mRNA_2560 ID=mRNA_2560|Name=jgi.p|Nanoce1779_2|628594|organism=Nannochloropsis oceanica|type=CDS|length=4200bp|location=Sequence derived from alignment at scaffold_5:657880..660383+ (Nannochloropsis oceanica) ATGCGTCGTCGGCGCCAAGACCCCATCTCTCTGCTGGCGGGATTAATTGC GGAGAACCGCAAAGTAGCCGTGATAGTCGGTGCTGGACTTAGTGCCGCGT CCGGCGTCCCAGTCTTTCGTGGTGACGACCCCAACGCCATTTGGGTGCGG CGAGCTGCATCCATGGGGACCAAGGCTGCTTTTTTGCGTGACCCTTTGGC ATGGTACAACGAGTTTTGGTTTCCATTTTTCAAGCACGAGTACACGCGCT ACCTTCCCAATGCGGGGCACGAGGCGATCGCCCGTCTTACCAACCTCTCC GCTGATCTCATGGTGGTAACCCAAAACATTGACTCGCTCCACCAACAAAC CCAAGTGCAATGGGATCACGCGAAGCAACTGGTGGAGATTCACGGCCGGC TTGGTTTGTACCGCTGCTCCAGCGACGAGTACTGCGTGCTGGCCAACGAG ATATACTTGAAGGCAGCCGATGTGTTTGGCCCCGCAGTGGCTGAGAACAT TCAAGGAGAGGGGGATGGTGCGGAAATGACCTCACCAGTGCGCGTGGATG ATGTCCCGAAGTGCCCTGAGTGTCGTAAAGGATTCATGATGCCCTTGGCA TTAATGTTCGATGAGATGTACGATAGCCACGCCTTCTACCAGAGCGATAA AGCCATGTGTGCGTTTGAGAAAGCGGATGCGCTGGTTTTTATAGGCACGT CTTTTCAAGTCAACATAACGAATCTCGCCATCGAGGCCGGGCCCCGCAAA AGAGGTATTCCGATTTTCAATTTCAATACACGGGACTGTCTATCCAAGAG GGGAGGGAGGAGGTATGACGTGTACAATATCATCGGACCGGCGGAAGAGA CTGTTAACGAATTGATGAAGGAGGTGGAATCGAAGCTTGGACTGGGCAAT GGAGTCGAAAAGGAAAAGGAAAGAGGGAAGGATAACGCGGGGCATTCCGA CCCGAGAACATCGAGCGGACGGAATATATCGATGGCCGTAAGCATGGATG CTACCGCAGTCTCAGTTCCCCTTACGGCAGATAGAGCCAGCAGTAGCAGT GATAGCATCGGTATGGCTGTGGTTGCGGCCATTCATTGCAATCCCAGCGA TTCCTCCTCTTCCTCCTCTACTGCGGCCGACCCGTCTTACGCCTACGACA CGGTACCACAACCCTGCCTCCCCCGCATGCTTTCGGAAGAAGAAGTCGAG GTCGATTTTCGACCATGCTTCGGCCGCTTGCCCCATCCGGATCCAGAAGT GGAGGGGCGCGTGGAGAGCACGTGGACCGAGCTGGCCAGGCAACGACAGG CGGACGGATGGTCAGCTTTATTTAACGCCTCCAAATTTAGATTGGCTGGA TGCCGGGTGTTGGGAGGAGAAGGAGGAGGAGGAGGAGTTAGAGGTGAAAT GGGAGGAGGAAGAGGAGGAGGGTGTGCTGTGCGGCTGGTGCTGGAGGTCT GGTTGACGGATTACAAGACAGCGCGTGGTACCAACCACCATCCGGGCGTA GCCATACTGCAGGCCGACGGCCGCGCCGCCCACGGCGACCCAGGCGCATA CCTTTCTCAAAAGATGGGTGTGAGTGCTCTTCTGTATACCAGTGACGAAG ATCTGATCTTTATTTCACGCTCCGTCAAAGGCTGTGCAGATTTCCAAGGC TTTATCGACACACCGGGAGGTCACCCTGAGCCATCAAACGTCAACCTGGC CTTTCCACCTGTCCCATCCCCTGACTTAACCCAAGATGAAGCGGCCTCGG TGCTGTTGCGTCGGAAAATTTGTCACGAAATATTTTCTTCCTCTGCTCAG GAGGTGGCGGACGAGGTGGGCGTGCCGCTTGATAAGCTCGGGCCGCCCAA GCTGCTTGGTCTGGTGAGGCAACTTGACTTTGGCAGTCTTCCAAGCGCGA CTTTTTTGGTTCAGTGTAATTGCAGCACCGCAGATGTCCATACGTACTAT GTGTCAGGGCCTAAGGAAATCGACGAATCTACGGGGCTTGTTGTGGTCAA GAAGAGTGAGCTGGTGACCTTCTTGGCGACGCCTGGAGTGAAGCTCGCCC CTGCTGCTCGAGGGAGTCTGGCGCTATTTGCAGAGCATAACTTGTGCTGA ATGCGTCGTCGGCGCCAAGACCCCATCTCTCTGCTGGCGGGATTAATTGC GGAGAACCGCAAAGTAGCCGTGATAGTCGGTGCTGGACTTAGTGCCGCGT CCGGCGTCCCAGTCTTTCGTGGTGACGACCCCAACGCCATTTGGGTGCGG CGAGCTGCATCCATGGGGACCAAGGCTGCTTTTTTGCGTGACCCTTTGGC ATGGTACAACGAGTTTTGGTTTCCATTTTTCAAGCACGAGTACACGCGCT ACCTTCCCAATGCGGGGCACGAGGCGATCGCCCGTCTTACCAACCTCTCC GCTGATCTCATGGTGGTAACCCAAAACATTGACTCGCTCCACCAACAAAC CCAAGTGCAATGGGATCACGCGAAGCAACTGGTGGAGATTCACGGCCGGC TTGGTTTGTACCGCTGCTCCAGCGACGAGTACTGCGTGCTGGCCAACGAG ATATACTTGAAGGCAGCCGATGTGTTTGGCCCCGCAGTGGCTGAGAACAT TCAAGGAGAGGGGGATGGTGCGGAAATGACCTCACCAGTGCGCGTGGATG ATGTCCCGAAGTGCCCTGAGTGTCGTAAAGGATTCATGATGCCCTTGGCA TTAATGTTCGATGAGATGTACGATAGCCACGCCTTCTACCAGAGCGATAA AGCCATGTGTGCGTTTGAGAAAGCGGATGCGCTGGTTTTTATAGGCACGT CTTTTCAAGTCAACATAACGAATCTCGCCATCGAGGCCGGGCCCCGCAAA AGAGGTATTCCGATTTTCAATTTCAATACACGGGACTGTCTATCCAAGAG GGGAGGGAGGAGGTATGACGTGTACAATATCATCGGACCGGCGGAAGAGA CTGTTAACGAATTGATGAAGGAGGTGGAATCGAAGCTTGGACTGGGCAAT GGAGTCGAAAAGGAAAAGGAAAGAGGGAAGGATAACGCGGGGCATTCCGA CCCGAGAACATCGAGCGGACGGAATATATCGATGGCCGTAAGCATGGATG CTACCGCAGTCTCAGTTCCCCTTACGGCAGATAGAGCCAGCAGTAGCAGT GATAGCATCGGTATGGCTGTGGTTGCGGCCATTCATTGCAATCCCAGCGA TTCCTCCTCTTCCTCCTCTACTGCGGCCGACCCGTCTTACGCCTACGACA CGGTACCACAACCCTGCCTCCCCCGCATGCTTTCGGAAGAAGAAGTCGAG GTCGATTTTCGACCATGCTTCGGCCGCTTGCCCCATCCGGATCCAGAAGT GGAGGGGCGCGTGGAGAGCACGTGGACCGAGCTGGCCAGGCAACGACAGG CGGACGGATGGTCAGCTTTATTTAACGCCTCCAAATTTAGATTGGCTGGA TGCCGGGTGTTGGGAGGAGAAGGAGGAGGAGGAGGAGTTAGAGGTGAAAT GGGAGGAGGAAGAGGAGGAGGGTGTGCTGTGCGGCTGGTGCTGGAGGTCT GGTTGACGGATTACAAGACAGCGCGTGGTACCAACCACCATCCGGGCGTA GCCATACTGCAGGCCGACGGCCGCGCCGCCCACGGCGACCCAGGCGCATA CCTTTCTCAAAAGATGGGTGTGAGTGCTCTTCTGTATACCAGTGACGAAG ATCTGATCTTTATTTCACGCTCCGTCAAAGGCTGTGCAGATTTCCAAGGC TTTATCGACACACCGGGAGGTCACCCTGAGCCATCAAACGTCAACCTGGC CTTTCCACCTGTCCCATCCCCTGACTTAACCCAAGATGAAGCGGCCTCGG TGCTGTTGCGTCGGAAAATTTGTCACGAAATATTTTCTTCCTCTGCTCAG GAGGTGGCGGACGAGGTGGGCGTGCCGCTTGATAAGCTCGGGCCGCCCAA GCTGCTTGGTCTGGTGAGGCAACTTGACTTTGGCAGTCTTCCAAGCGCGA CTTTTTTGGTTCAGTGTAATTGCAGCACCGCAGATGTCCATACGTACTAT GTGTCAGGGCCTAAGGAAATCGACGAATCTACGGGGCTTGTTGTGGTCAA GAAGAGTGAGCTGGTGACCTTCTTGGCGACGCCTGGAGTGAAGCTCGCCC CTGCTGCTCGAGGGAGTCTGGCGCTATTTGCAGAGCATAACTTGTGCTGA back to top
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