jgi.p|Nanoce1779_2|637471, mRNA_2559 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|637471
Unique NamemRNA_2559
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1473
Alignment locationscaffold_5:656203..657675 -

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Properties
Property NameValue
TranscriptId637557
TrackFilteredModels2
ProteinId637471
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:656203..657675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637471gene_2559Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2559CDS_2559Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637471mRNA_2559-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2559 ID=mRNA_2559|Name=jgi.p|Nanoce1779_2|637471|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp
ATGGCCGTAGATGACACGACCACTCGTCTTTTCACTGTCCTATGGGCTGA
AGATAAGGTAGAGGAACCCGTGATGCCCGAGGAGGGGCTGGAGGAGGAGG
AGGAGCAACACTGGGGGTCGGCTTCCTCTACGCCGCACCGCGTGGTCTTC
TGTGATGTTGATGTCAAATTCAAGCCGCAAAGGGCCTTTCTCTACCGATC
GCATGGCTTTTTTCACCAGGTGGCCCTGACGTCGACTAACACGCTCTCTA
GACTGGGTCAAGGAGAGTACGAACTCACCTTCCGTCAATGCGATGGGTAT
ATCCCCTCGCCGCGCTTTCTCCGCTTTTTCGTGGGGCCCTTCTCAACCTC
ATCCTCCTCCTCAAGCTCCCCTCCCCCTCCTACCATCGACCGTAGCGAGC
CCCTCTATGTTGGCACCATAATCATGCACGAGCTGCGCTTTCCATTCCTC
CGCTCTCTCGTCCCTGGTTTAAGTGCCCTAGGAGCCATAGTGGTCACCCT
CGTGTTTGGTCTCCGAATTTTGCAGAAAAGGCGCAGCACATGTCGAATCG
AAAGGGAAATGAAGAAATCTTCAACCACCAGCACCTCCCGGGTAGGCTCT
CCGATGGCACTCTCCTCTTCCTTTTCCTCCTCATGCTCCGGAATCCAGCT
CAAGACGAAGGAGGAAATGTCTTTTGAGAAGGAGCCAGGAGGAGCAGCAG
AATTGTCATCAGGAGATAAGGACAGCGTCGAGCTGCTGGTGCAGCTGCCG
GAAAGTGACGCGCGGCCGAAGGATTTCCCGAAAGTGTCCCCCACCTCTGA
CACAGACGGAGAGGAAAGCGTCTTTGGGGGTTTCGGGTTGAGTCTGCCGC
AGCCACTGCGAGAGAAAGACCCTTGCTATTACCACAAGCACATCAAAAAC
CTGCAGGTCCGTCAACACGTGCAGTATCAGCAGGCAGAAGAACAGCCGGT
GCGCCGTTCTCCTCTGACTCCTTATGGCACACCTCTGACTCCTCAGAGGG
CAATCGACCACCCGCTCGCTCGGCTCCCGCGCCCGGGATCTGCATTTTCC
ATATCACCCTCCTCTCCGGCCTCGGCTTTTGCGCTGATTGATTCGCCGAG
AGGCGCGGAAGGAGGAGAAAAAGCAGGGCCAGGAGCAGTGCCAGGAGCAG
CAGCGGCAGCAACGGAAGATGAGGTGATGATGCGCGAAGAGAGACGGCGA
CATGGAGGAGACGTAGAGGGGGAGGGAGAAAACTTGGGGTGGGTGAATGA
GTACTGGTCGTTGGAGGGATCGGCATCTTGCAGGAGATCGTGGACGAGAG
ATGAGGAGGAAAGCCCGAGGGGAGGGTTGGAGAAGGCGGAGGCAACGGAG
GAGGGAGGGGGACAGGAAGGGCAGGATGTTGCCCGTTTCCTAAAGCGAAC
GGGTGAGGATGCAGAGCAGGGCGATAGGGTGGAGCGCTGGTTTAAAGACG
GAAGCAAGCAAGAAGAGGACTGA
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protein sequence of jgi.p|Nanoce1779_2|637471

>mRNA_2559-protein ID=mRNA_2559-protein|Name=jgi.p|Nanoce1779_2|637471|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MAVDDTTTRLFTVLWAEDKVEEPVMPEEGLEEEEEQHWGSASSTPHRVVF
CDVDVKFKPQRAFLYRSHGFFHQVALTSTNTLSRLGQGEYELTFRQCDGY
IPSPRFLRFFVGPFSTSSSSSSSPPPPTIDRSEPLYVGTIIMHELRFPFL
RSLVPGLSALGAIVVTLVFGLRILQKRRSTCRIEREMKKSSTTSTSRVGS
PMALSSSFSSSCSGIQLKTKEEMSFEKEPGGAAELSSGDKDSVELLVQLP
ESDARPKDFPKVSPTSDTDGEESVFGGFGLSLPQPLREKDPCYYHKHIKN
LQVRQHVQYQQAEEQPVRRSPLTPYGTPLTPQRAIDHPLARLPRPGSAFS
ISPSSPASAFALIDSPRGAEGGEKAGPGAVPGAAAAATEDEVMMREERRR
HGGDVEGEGENLGWVNEYWSLEGSASCRRSWTRDEEESPRGGLEKAEATE
EGGGQEGQDVARFLKRTGEDAEQGDRVERWFKDGSKQEED*
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mRNA from alignment at scaffold_5:656203..657675-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2559 ID=mRNA_2559|Name=jgi.p|Nanoce1779_2|637471|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp|location=Sequence derived from alignment at scaffold_5:656203..657675- (Nannochloropsis oceanica)
ATGGCCGTAGATGACACGACCACTCGTCTTTTCACTGTCCTATGGGCTGA
AGATAAGGTAGAGGAACCCGTGATGCCCGAGGAGGGGCTGGAGGAGGAGG
AGGAGCAACACTGGGGGTCGGCTTCCTCTACGCCGCACCGCGTGGTCTTC
TGTGATGTTGATGTCAAATTCAAGCCGCAAAGGGCCTTTCTCTACCGATC
GCATGGCTTTTTTCACCAGGTGGCCCTGACGTCGACTAACACGCTCTCTA
GACTGGGTCAAGGAGAGTACGAACTCACCTTCCGTCAATGCGATGGGTAT
ATCCCCTCGCCGCGCTTTCTCCGCTTTTTCGTGGGGCCCTTCTCAACCTC
ATCCTCCTCCTCAAGCTCCCCTCCCCCTCCTACCATCGACCGTAGCGAGC
CCCTCTATGTTGGCACCATAATCATGCACGAGCTGCGCTTTCCATTCCTC
CGCTCTCTCGTCCCTGGTTTAAGTGCCCTAGGAGCCATAGTGGTCACCCT
CGTGTTTGGTCTCCGAATTTTGCAGAAAAGGCGCAGCACATGTCGAATCG
AAAGGGAAATGAAGAAATCTTCAACCACCAGCACCTCCCGGGTAGGCTCT
CCGATGGCACTCTCCTCTTCCTTTTCCTCCTCATGCTCCGGAATCCAGCT
CAAGACGAAGGAGGAAATGTCTTTTGAGAAGGAGCCAGGAGGAGCAGCAG
AATTGTCATCAGGAGATAAGGACAGCGTCGAGCTGCTGGTGCAGCTGCCG
GAAAGTGACGCGCGGCCGAAGGATTTCCCGAAAGTGTCCCCCACCTCTGA
CACAGACGGAGAGGAAAGCGTCTTTGGGGGTTTCGGGTTGAGTCTGCCGC
AGCCACTGCGAGAGAAAGACCCTTGCTATTACCACAAGCACATCAAAAAC
CTGCAGGTCCGTCAACACGTGCAGTATCAGCAGGCAGAAGAACAGCCGGT
GCGCCGTTCTCCTCTGACTCCTTATGGCACACCTCTGACTCCTCAGAGGG
CAATCGACCACCCGCTCGCTCGGCTCCCGCGCCCGGGATCTGCATTTTCC
ATATCACCCTCCTCTCCGGCCTCGGCTTTTGCGCTGATTGATTCGCCGAG
AGGCGCGGAAGGAGGAGAAAAAGCAGGGCCAGGAGCAGTGCCAGGAGCAG
CAGCGGCAGCAACGGAAGATGAGGTGATGATGCGCGAAGAGAGACGGCGA
CATGGAGGAGACGTAGAGGGGGAGGGAGAAAACTTGGGGTGGGTGAATGA
GTACTGGTCGTTGGAGGGATCGGCATCTTGCAGGAGATCGTGGACGAGAG
ATGAGGAGGAAAGCCCGAGGGGAGGGTTGGAGAAGGCGGAGGCAACGGAG
GAGGGAGGGGGACAGGAAGGGCAGGATGTTGCCCGTTTCCTAAAGCGAAC
GGGTGAGGATGCAGAGCAGGGCGATAGGGTGGAGCGCTGGTTTAAAGACG
GAAGCAAGCAAGAAGAGGACTGA
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Coding sequence (CDS) from alignment at scaffold_5:656203..657675-

>mRNA_2559 ID=mRNA_2559|Name=jgi.p|Nanoce1779_2|637471|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at scaffold_5:656203..657675- (Nannochloropsis oceanica)
ATGGCCGTAGATGACACGACCACTCGTCTTTTCACTGTCCTATGGGCTGA
AGATAAGGTAGAGGAACCCGTGATGCCCGAGGAGGGGCTGGAGGAGGAGG
AGGAGCAACACTGGGGGTCGGCTTCCTCTACGCCGCACCGCGTGGTCTTC
TGTGATGTTGATGTCAAATTCAAGCCGCAAAGGGCCTTTCTCTACCGATC
GCATGGCTTTTTTCACCAGGTGGCCCTGACGTCGACTAACACGCTCTCTA
GACTGGGTCAAGGAGAGTACGAACTCACCTTCCGTCAATGCGATGGGTAT
ATCCCCTCGCCGCGCTTTCTCCGCTTTTTCGTGGGGCCCTTCTCAACCTC
ATCCTCCTCCTCAAGCTCCCCTCCCCCTCCTACCATCGACCGTAGCGAGC
CCCTCTATGTTGGCACCATAATCATGCACGAGCTGCGCTTTCCATTCCTC
CGCTCTCTCGTCCCTGGTTTAAGTGCCCTAGGAGCCATAGTGGTCACCCT
CGTGTTTGGTCTCCGAATTTTGCAGAAAAGGCGCAGCACATGTCGAATCG
AAAGGGAAATGAAGAAATCTTCAACCACCAGCACCTCCCGGGTAGGCTCT
CCGATGGCACTCTCCTCTTCCTTTTCCTCCTCATGCTCCGGAATCCAGCT
CAAGACGAAGGAGGAAATGTCTTTTGAGAAGGAGCCAGGAGGAGCAGCAG
AATTGTCATCAGGAGATAAGGACAGCGTCGAGCTGCTGGTGCAGCTGCCG
GAAAGTGACGCGCGGCCGAAGGATTTCCCGAAAGTGTCCCCCACCTCTGA
CACAGACGGAGAGGAAAGCGTCTTTGGGGGTTTCGGGTTGAGTCTGCCGC
AGCCACTGCGAGAGAAAGACCCTTGCTATTACCACAAGCACATCAAAAAC
CTGCAGGTCCGTCAACACGTGCAGTATCAGCAGGCAGAAGAACAGCCGGT
GCGCCGTTCTCCTCTGACTCCTTATGGCACACCTCTGACTCCTCAGAGGG
CAATCGACCACCCGCTCGCTCGGCTCCCGCGCCCGGGATCTGCATTTTCC
ATATCACCCTCCTCTCCGGCCTCGGCTTTTGCGCTGATTGATTCGCCGAG
AGGCGCGGAAGGAGGAGAAAAAGCAGGGCCAGGAGCAGTGCCAGGAGCAG
CAGCGGCAGCAACGGAAGATGAGGTGATGATGCGCGAAGAGAGACGGCGA
CATGGAGGAGACGTAGAGGGGGAGGGAGAAAACTTGGGGTGGGTGAATGA
GTACTGGTCGTTGGAGGGATCGGCATCTTGCAGGAGATCGTGGACGAGAG
ATGAGGAGGAAAGCCCGAGGGGAGGGTTGGAGAAGGCGGAGGCAACGGAG
GAGGGAGGGGGACAGGAAGGGCAGGATGTTGCCCGTTTCCTAAAGCGAAC
GGGTGAGGATGCAGAGCAGGGCGATAGGGTGGAGCGCTGGTTTAAAGACG
GAAGCAAGCAAGAAGAGGACTGA
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Synonyms
Publications