Properties
| Property Name | Value |
|---|
| TranscriptId | 580859 |
| Track | FilteredModels2 |
| ProteinId | 580773 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:653804..656056 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2558 ID=mRNA_2558|Name=jgi.p|Nanoce1779_2|580773|organism=Nannochloropsis oceanica|type=mRNA|length=2115bp
AACAGACACAGGACTGGAGGCCATGCTTTGCCGGTCGGGGGGGCGCAGGG
CGATGTCCTGGGCGTGCTCTCCGTCTTCAAACGATAATCCTGCCTTGCGA
CGCCTAGGACTGCTTCGGAGCAGCAGCACCAGGCCCACCATCCGCCTGGA
CGGCCAGCCCCGATTTTTAAGCAGCACAAGCTCGATTCCCAAGCCCATCA
GTTCTCATGGCAGCACTATCAGCCAAGACAGCCAGCGGCGCATTTTGCAG
CGCTGCGACGAGCTCCAGTCATACCTTCAGCCCATCAACGACAGACTCCG
CGGACCCTTGGAAAAGTGCAGCGATAAAGCTCCCTTGCTGCCGTTTGTTT
TTTTGTTGGGTAACCACAGCAGCGGCAAAAGTTCTTTTATCAACTTTGTG
TGTAAGCGACCGATTCAGACCGCGGGCGTGGCACCCACGGACGACAGCTT
TACCATTATTGCGCCCGGTCCCAGTGATATTGATCAGGACGGGCCGTCTA
TTGTGGGAGATCCAGACATGGGCTTTGCGGGTCTGCGGCATTTTGGTCCT
GATTTGATTCATCACACACAGCTCAAGATTCGATCAGGGTTGGCGACGCC
TGACTTTATGTTGGTGGATTCCCCGGGAATGATTGACAGTCCGCATGCTG
CCGCGAATTACCAGAGCCCGTCCTCACATGTGACAGGAGGAGGGTATAAA
GGTGGGGTGCCGCGGCCTCCGAATCACTTGGACCGTGGCTATGACTTTGG
TGGGGTTTGTAGGTGGTTTGCTGACAGGGCGGATGTCATTCTTTTGTTTT
TTGACCCGGACAAACCAGGCACAACGGGAGAGACTCTTTCTGTACTCACG
CAGCCTTTGGCGGGGATGGACCATAAGTTGTACATTGTCTTGAACAAAGC
GGATCAATTCCGACGGATTCAAGATTTTGCCCGAGCGTACGGTTCGTTGT
GTTGGAACTTGTCCAAGGTCATCCCTCGGAAGGACCTCCCCCGTATCTAT
ACCATGTGCTTGCCCGCGGCCTTTCAACGGCAGCAGGAGCACCAACAACC
GCAAGGACAAGACACGTACGGCGGCGACAAGGAGGCATCTTCCCTAGGCC
TAGGATTGACAGACTTAGAAAAGAGTCGAGAGGAAGTTGTAAGCGAGGTG
CTCAAGGCCCCTAAACGGCGCATTGACAACGTCATTACCCGCTTGGCCGA
CTCCGTCAACCTAGTCCAAATGCACGCCCTGGTCCTCGAAGGCCTGCGAA
GCGATTTTGCCCGCGAGCTCTGGACTTTTCGAGCAGGCGTTGCAGGGCTA
TTGATGGCAGGGACGGGCTTCGTGGGTGGGGGTCTTTATCTGGGGTTAGC
GCTGCAGCCAATGCTGGCTTTTGCGGCGCTGTACACGGTCGGGACGGTGG
GGTTTGTGTATACGAATAACCGAGTTCTCGGTGAGCACGAGGCGTTGTTG
GCGAGTCCGGAGGGATTGCGGAGGGCATTTGAGCGTTTGTATGCAAGACC
GGTGTTGGAGGGGGATGAGTTTGTCACGTCGTTGTGGAAGCGGACCTTCC
CGTCTTTGCAGATGATGGTGGAGACACAGGCCGGGATAGGGGGGGGAGGG
TTGGGGGGCTTGCCGAAGGTGAGCACGGCGGAGCTGCAGGAGATGCAGCG
GATCCTTCACGAGGAGATTCCCTCGCTCCGTCGGTTAGCGGCACCTGTTT
CATGGACCTTCAAGAACAACAGCGGCAGCAGCACCGGCGGCAGTAGTGGT
AGCAGTGGGGGGGGGGCTTTGGGGGAAAGGAAGTCGGGAAGGAATTGGGC
AGACACAGCCCTTGGTAGCCAGTAGTAGGATCTGCAGCAGCAACCGTAGA
AGTAGTATGGTTGAGAGGGCGTCATATCTGTATAATTCCATTCCTGCTCT
AGTAGACCAGCATCCTTTCGGCTCACCGCCAGCACCTTGAATAGTTGTCT
GGTCCTCGCGCTTGTACGCATGAACATAAACAACGAGAAACAATTCGGAT
TTATGACAGGAAGATCATTAGTTGCTAAATTCGGTTCACTCCTGCTCCAC
ATCCTCCCATTACCAGCGTCGTAGGGAAGCCGGGCAAGAAAAGCCAATTA
TGATTGAGTGTTGCT back to topprotein sequence of jgi.p|Nanoce1779_2|580773 >mRNA_2558-protein ID=mRNA_2558-protein|Name=jgi.p|Nanoce1779_2|580773|organism=Nannochloropsis oceanica|type=polypeptide|length=601bp
MLCRSGGRRAMSWACSPSSNDNPALRRLGLLRSSSTRPTIRLDGQPRFLS
STSSIPKPISSHGSTISQDSQRRILQRCDELQSYLQPINDRLRGPLEKCS
DKAPLLPFVFLLGNHSSGKSSFINFVCKRPIQTAGVAPTDDSFTIIAPGP
SDIDQDGPSIVGDPDMGFAGLRHFGPDLIHHTQLKIRSGLATPDFMLVDS
PGMIDSPHAAANYQSPSSHVTGGGYKGGVPRPPNHLDRGYDFGGVCRWFA
DRADVILLFFDPDKPGTTGETLSVLTQPLAGMDHKLYIVLNKADQFRRIQ
DFARAYGSLCWNLSKVIPRKDLPRIYTMCLPAAFQRQQEHQQPQGQDTYG
GDKEASSLGLGLTDLEKSREEVVSEVLKAPKRRIDNVITRLADSVNLVQM
HALVLEGLRSDFARELWTFRAGVAGLLMAGTGFVGGGLYLGLALQPMLAF
AALYTVGTVGFVYTNNRVLGEHEALLASPEGLRRAFERLYARPVLEGDEF
VTSLWKRTFPSLQMMVETQAGIGGGGLGGLPKVSTAELQEMQRILHEEIP
SLRRLAAPVSWTFKNNSGSSTGGSSGSSGGGALGERKSGRNWADTALGSQ
* back to topmRNA from alignment at scaffold_5:653804..656056+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2558 ID=mRNA_2558|Name=jgi.p|Nanoce1779_2|580773|organism=Nannochloropsis oceanica|type=mRNA|length=2253bp|location=Sequence derived from alignment at scaffold_5:653804..656056+ (Nannochloropsis oceanica)
AACAGACACAGGACTGGAGGCCATGCTTTGCCGGTCGGGGGGGCGCAGGG
CGATGTCCTGGGCGTGCTCTCCGTCTTCAAACGATAATCCTGCCTTGCGA
CGCCTAGGACTGCTTCGGAGCAGCAGCACCAGGCCCACCATCCGCCTGGA
CGGCCAGCCCCGATTTTTAAGCAGCACAAGCTCGATTCCCAAGCCCATCA
GTTCTCATGGCAGCACTATCAGCCAAGACAGCCAGCGGCGCATTTTGCAG
CGCTGCGACGAGCTCCAGTCATACCTTCAGGTAGGGAAAGGAAGAGTGGA
GTGAGAGGGGAGAGCGAATATTTAAACCTGCCACTCCCCCCCTCATTTCA
CCCCTCCCTTGCTACATACTCAACCCACCATCTTTTCTTTAACATCTTTG
ATCCTCCCCCCCTTCCAGCCCATCAACGACAGACTCCGCGGACCCTTGGA
AAAGTGCAGCGATAAAGCTCCCTTGCTGCCGTTTGTTTTTTTGTTGGGTA
ACCACAGCAGCGGCAAAAGTTCTTTTATCAACTTTGTGTGTAAGCGACCG
ATTCAGACCGCGGGCGTGGCACCCACGGACGACAGCTTTACCATTATTGC
GCCCGGTCCCAGTGATATTGATCAGGACGGGCCGTCTATTGTGGGAGATC
CAGACATGGGCTTTGCGGGTCTGCGGCATTTTGGTCCTGATTTGATTCAT
CACACACAGCTCAAGATTCGATCAGGGTTGGCGACGCCTGACTTTATGTT
GGTGGATTCCCCGGGAATGATTGACAGTCCGCATGCTGCCGCGAATTACC
AGAGCCCGTCCTCACATGTGACAGGAGGAGGGTATAAAGGTGGGGTGCCG
CGGCCTCCGAATCACTTGGACCGTGGCTATGACTTTGGTGGGGTTTGTAG
GTGGTTTGCTGACAGGGCGGATGTCATTCTTTTGTTTTTTGACCCGGACA
AACCAGGCACAACGGGAGAGACTCTTTCTGTACTCACGCAGCCTTTGGCG
GGGATGGACCATAAGTTGTACATTGTCTTGAACAAAGCGGATCAATTCCG
ACGGATTCAAGATTTTGCCCGAGCGTACGGTTCGTTGTGTTGGAACTTGT
CCAAGGTCATCCCTCGGAAGGACCTCCCCCGTATCTATACCATGTGCTTG
CCCGCGGCCTTTCAACGGCAGCAGGAGCACCAACAACCGCAAGGACAAGA
CACGTACGGCGGCGACAAGGAGGCATCTTCCCTAGGCCTAGGATTGACAG
ACTTAGAAAAGAGTCGAGAGGAAGTTGTAAGCGAGGTGCTCAAGGCCCCT
AAACGGCGCATTGACAACGTCATTACCCGCTTGGCCGACTCCGTCAACCT
AGTCCAAATGCACGCCCTGGTCCTCGAAGGCCTGCGAAGCGATTTTGCCC
GCGAGCTCTGGACTTTTCGAGCAGGCGTTGCAGGGCTATTGATGGCAGGG
ACGGGCTTCGTGGGTGGGGGTCTTTATCTGGGGTTAGCGCTGCAGCCAAT
GCTGGCTTTTGCGGCGCTGTACACGGTCGGGACGGTGGGGTTTGTGTATA
CGAATAACCGAGTTCTCGGTGAGCACGAGGCGTTGTTGGCGAGTCCGGAG
GGATTGCGGAGGGCATTTGAGCGTTTGTATGCAAGACCGGTGTTGGAGGG
GGATGAGTTTGTCACGTCGTTGTGGAAGCGGACCTTCCCGTCTTTGCAGA
TGATGGTGGAGACACAGGCCGGGATAGGGGGGGGAGGGTTGGGGGGCTTG
CCGAAGGTGAGCACGGCGGAGCTGCAGGAGATGCAGCGGATCCTTCACGA
GGAGATTCCCTCGCTCCGTCGGTTAGCGGCACCTGTTTCATGGACCTTCA
AGAACAACAGCGGCAGCAGCACCGGCGGCAGTAGTGGTAGCAGTGGGGGG
GGGGCTTTGGGGGAAAGGAAGTCGGGAAGGAATTGGGCAGACACAGCCCT
TGGTAGCCAGTAGTAGGATCTGCAGCAGCAACCGTAGAAGTAGTATGGTT
GAGAGGGCGTCATATCTGTATAATTCCATTCCTGCTCTAGTAGACCAGCA
TCCTTTCGGCTCACCGCCAGCACCTTGAATAGTTGTCTGGTCCTCGCGCT
TGTACGCATGAACATAAACAACGAGAAACAATTCGGATTTATGACAGGAA
GATCATTAGTTGCTAAATTCGGTTCACTCCTGCTCCACATCCTCCCATTA
CCAGCGTCGTAGGGAAGCCGGGCAAGAAAAGCCAATTATGATTGAGTGTT
GCT back to topCoding sequence (CDS) from alignment at scaffold_5:653804..656056+ >mRNA_2558 ID=mRNA_2558|Name=jgi.p|Nanoce1779_2|580773|organism=Nannochloropsis oceanica|type=CDS|length=3606bp|location=Sequence derived from alignment at scaffold_5:653804..656056+ (Nannochloropsis oceanica)
ATGCTTTGCCGGTCGGGGGGGCGCAGGGCGATGTCCTGGGCGTGCTCTCC
GTCTTCAAACGATAATCCTGCCTTGCGACGCCTAGGACTGCTTCGGAGCA
GCAGCACCAGGCCCACCATCCGCCTGGACGGCCAGCCCCGATTTTTAAGC
AGCACAAGCTCGATTCCCAAGCCCATCAGTTCTCATGGCAGCACTATCAG
CCAAGACAGCCAGCGGCGCATTTTGCAGCGCTGCGACGAGCTCCAGTCAT
ACCTTCAGCCCATCAACGACAGACTCCGCGGACCCTTGGAAAAGTGCAGC
GATAAAGCTCCCTTGCTGCCGTTTGTTTTTTTGTTGGGTAACCACAGCAG
CGGCAAAAGTTCTTTTATCAACTTTGTGTGTAAGCGACCGATTCAGACCG
CGGGCGTGGCACCCACGGACGACAGCTTTACCATTATTGCGCCCGGTCCC
AGTGATATTGATCAGGACGGGCCGTCTATTGTGGGAGATCCAGACATGGG
CTTTGCGGGTCTGCGGCATTTTGGTCCTGATTTGATTCATCACACACAGC
TCAAGATTCGATCAGGGTTGGCGACGCCTGACTTTATGTTGGTGGATTCC
CCGGGAATGATTGACAGTCCGCATGCTGCCGCGAATTACCAGAGCCCGTC
CTCACATGTGACAGGAGGAGGGTATAAAGGTGGGGTGCCGCGGCCTCCGA
ATCACTTGGACCGTGGCTATGACTTTGGTGGGGTTTGTAGGTGGTTTGCT
GACAGGGCGGATGTCATTCTTTTGTTTTTTGACCCGGACAAACCAGGCAC
AACGGGAGAGACTCTTTCTGTACTCACGCAGCCTTTGGCGGGGATGGACC
ATAAGTTGTACATTGTCTTGAACAAAGCGGATCAATTCCGACGGATTCAA
GATTTTGCCCGAGCGTACGGTTCGTTGTGTTGGAACTTGTCCAAGGTCAT
CCCTCGGAAGGACCTCCCCCGTATCTATACCATGTGCTTGCCCGCGGCCT
TTCAACGGCAGCAGGAGCACCAACAACCGCAAGGACAAGACACGTACGGC
GGCGACAAGGAGGCATCTTCCCTAGGCCTAGGATTGACAGACTTAGAAAA
GAGTCGAGAGGAAGTTGTAAGCGAGGTGCTCAAGGCCCCTAAACGGCGCA
TTGACAACGTCATTACCCGCTTGGCCGACTCCGTCAACCTAGTCCAAATG
CACGCCCTGGTCCTCGAAGGCCTGCGAAGCGATTTTGCCCGCGAGCTCTG
GACTTTTCGAGCAGGCGTTGCAGGGCTATTGATGGCAGGGACGGGCTTCG
TGGGTGGGGGTCTTTATCTGGGGTTAGCGCTGCAGCCAATGCTGGCTTTT
GCGGCGCTGTACACGGTCGGGACGGTGGGGTTTGTGTATACGAATAACCG
AGTTCTCGGTGAGCACGAGGCGTTGTTGGCGAGTCCGGAGGGATTGCGGA
GGGCATTTGAGCGTTTGTATGCAAGACCGGTGTTGGAGGGGGATGAGTTT
GTCACGTCGTTGTGGAAGCGGACCTTCCCGTCTTTGCAGATGATGGTGGA
GACACAGGCCGGGATAGGGGGGGGAGGGTTGGGGGGCTTGCCGAAGGTGA
GCACGGCGGAGCTGCAGGAGATGCAGCGGATCCTTCACGAGGAGATTCCC
TCGCTCCGTCGGTTAGCGGCACCTGTTTCATGGACCTTCAAGAACAACAG
CGGCAGCAGCACCGGCGGCAGTAGTGGTAGCAGTGGGGGGGGGGCTTTGG
GGGAAAGGAAGTCGGGAAGGAATTGGGCAGACACAGCCCTTGGTAGCCAG
TAGATGCTTTGCCGGTCGGGGGGGCGCAGGGCGATGTCCTGGGCGTGCTC
TCCGTCTTCAAACGATAATCCTGCCTTGCGACGCCTAGGACTGCTTCGGA
GCAGCAGCACCAGGCCCACCATCCGCCTGGACGGCCAGCCCCGATTTTTA
AGCAGCACAAGCTCGATTCCCAAGCCCATCAGTTCTCATGGCAGCACTAT
CAGCCAAGACAGCCAGCGGCGCATTTTGCAGCGCTGCGACGAGCTCCAGT
CATACCTTCAGCCCATCAACGACAGACTCCGCGGACCCTTGGAAAAGTGC
AGCGATAAAGCTCCCTTGCTGCCGTTTGTTTTTTTGTTGGGTAACCACAG
CAGCGGCAAAAGTTCTTTTATCAACTTTGTGTGTAAGCGACCGATTCAGA
CCGCGGGCGTGGCACCCACGGACGACAGCTTTACCATTATTGCGCCCGGT
CCCAGTGATATTGATCAGGACGGGCCGTCTATTGTGGGAGATCCAGACAT
GGGCTTTGCGGGTCTGCGGCATTTTGGTCCTGATTTGATTCATCACACAC
AGCTCAAGATTCGATCAGGGTTGGCGACGCCTGACTTTATGTTGGTGGAT
TCCCCGGGAATGATTGACAGTCCGCATGCTGCCGCGAATTACCAGAGCCC
GTCCTCACATGTGACAGGAGGAGGGTATAAAGGTGGGGTGCCGCGGCCTC
CGAATCACTTGGACCGTGGCTATGACTTTGGTGGGGTTTGTAGGTGGTTT
GCTGACAGGGCGGATGTCATTCTTTTGTTTTTTGACCCGGACAAACCAGG
CACAACGGGAGAGACTCTTTCTGTACTCACGCAGCCTTTGGCGGGGATGG
ACCATAAGTTGTACATTGTCTTGAACAAAGCGGATCAATTCCGACGGATT
CAAGATTTTGCCCGAGCGTACGGTTCGTTGTGTTGGAACTTGTCCAAGGT
CATCCCTCGGAAGGACCTCCCCCGTATCTATACCATGTGCTTGCCCGCGG
CCTTTCAACGGCAGCAGGAGCACCAACAACCGCAAGGACAAGACACGTAC
GGCGGCGACAAGGAGGCATCTTCCCTAGGCCTAGGATTGACAGACTTAGA
AAAGAGTCGAGAGGAAGTTGTAAGCGAGGTGCTCAAGGCCCCTAAACGGC
GCATTGACAACGTCATTACCCGCTTGGCCGACTCCGTCAACCTAGTCCAA
ATGCACGCCCTGGTCCTCGAAGGCCTGCGAAGCGATTTTGCCCGCGAGCT
CTGGACTTTTCGAGCAGGCGTTGCAGGGCTATTGATGGCAGGGACGGGCT
TCGTGGGTGGGGGTCTTTATCTGGGGTTAGCGCTGCAGCCAATGCTGGCT
TTTGCGGCGCTGTACACGGTCGGGACGGTGGGGTTTGTGTATACGAATAA
CCGAGTTCTCGGTGAGCACGAGGCGTTGTTGGCGAGTCCGGAGGGATTGC
GGAGGGCATTTGAGCGTTTGTATGCAAGACCGGTGTTGGAGGGGGATGAG
TTTGTCACGTCGTTGTGGAAGCGGACCTTCCCGTCTTTGCAGATGATGGT
GGAGACACAGGCCGGGATAGGGGGGGGAGGGTTGGGGGGCTTGCCGAAGG
TGAGCACGGCGGAGCTGCAGGAGATGCAGCGGATCCTTCACGAGGAGATT
CCCTCGCTCCGTCGGTTAGCGGCACCTGTTTCATGGACCTTCAAGAACAA
CAGCGGCAGCAGCACCGGCGGCAGTAGTGGTAGCAGTGGGGGGGGGGCTT
TGGGGGAAAGGAAGTCGGGAAGGAATTGGGCAGACACAGCCCTTGGTAGC
CAGTAG back to top
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