jgi.p|Nanoce1779_2|580771, mRNA_2557 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580771
Unique NamemRNA_2557
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1155
Alignment locationscaffold_5:651706..653293 -

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Properties
Property NameValue
TranscriptId580857
TrackFilteredModels2
ProteinId580771
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:651706..653293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580771gene_2557Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580771mRNA_2557-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2557CDS_2557Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2557 ID=mRNA_2557|Name=jgi.p|Nanoce1779_2|580771|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp
ACAGGAATTCGACGTCCTGCCCCATCACTCCTTGCATAACGAGCACGCCT
TCATCCGTCACTACATCCATCAACTCTTTCTCCACAAACGAAATCATGAC
AACAGCCATAGGCATGATGGACGCCGGATACTTTGTTGGCCGGAAGGAAA
TCGTGGACTGGGTGAATGAAACGCTGCAGTTGAGCCTGAGCAAAGTGGAG
CAGACTGCCTCGGGTGCCGTGGCATGCCAGTTGCTTGACCGCATTTACCC
GGGCAAGGTCCCCCTTGGCAAGGTAAACTGGGATGCCAAGCTGGATTACG
AATTTTTAAGTAACTACAAGATACTTCAGAATGCCTTTACCAGGCTGAAG
ATCGATAAACATCTGCCGGTGGAAAAACTGGTTAGGGCCAAGTACCAAGA
TAATTTGGAGTTTATGCAGTGGTTCAAGCGCTTCTACGAGCTCAATAACC
CGGCGCTCGACTACGACCCCGTCGCCGCTCGCGCAGGGGGTAAGGGTGCT
GGAGGGGCTGCCCGTATCCTGCCGGCTGCGGGATCATCCTTTTCCAATAG
TACAAGGGTGGGGGGCACCCCGAGCAAGCCTGTGGCAGGCCGCTCCAACT
CCCGCAGCATTGGTAGCAGCGCCAGCACTAGTTATACTTCCGGCTGTGTG
GCTCGGGATAAGGAGAATGGTGGCAGCCGGACGATAAGCAATAAGCCCAA
GGTGGCTTCTGTGCCTTTGATGGACGAGGTGCTGGTGCAGAAAGCCGAGG
CGCTGCAACAGGAAAACGCAACCCTCCAAGCCACCATTGAGGGTTTGGAG
AAGGAGCGGGACTTCTACTTTGAGAAGCTGACGGTAGTGGAGGAAATGCT
GCAGGAGCGGCAAGCGGGAGCCGGAGACGATGTCATTCCTGAAGTGGCAG
AGCTGGTGGAACAGATTTTCAAAGTTCTCTACGCTACTGAGAGCACCACC
GCCCCTCCCGCCAGCGTTGTCAGCGTGGAGTCATCCGAGGCCGCGGCGGC
GGCTGTGGCGGCACCTTCTGCCGTCGTTTAAATGTTGGGACGCGAACGTA
ACAAAGGGAGGAAATGGTGAATGGGTTTTGGAGCCGACACTTTGGCAGCA
GCAGCGGAAGCAGGGGCAAGGGAACGAGAGGAAAGAAGAAGCTAATGTGC
AGGAT
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protein sequence of jgi.p|Nanoce1779_2|580771

>mRNA_2557-protein ID=mRNA_2557-protein|Name=jgi.p|Nanoce1779_2|580771|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MTTAIGMMDAGYFVGRKEIVDWVNETLQLSLSKVEQTASGAVACQLLDRI
YPGKVPLGKVNWDAKLDYEFLSNYKILQNAFTRLKIDKHLPVEKLVRAKY
QDNLEFMQWFKRFYELNNPALDYDPVAARAGGKGAGGAARILPAAGSSFS
NSTRVGGTPSKPVAGRSNSRSIGSSASTSYTSGCVARDKENGGSRTISNK
PKVASVPLMDEVLVQKAEALQQENATLQATIEGLEKERDFYFEKLTVVEE
MLQERQAGAGDDVIPEVAELVEQIFKVLYATESTTAPPASVVSVESSEAA
AAAVAAPSAVV*
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mRNA from alignment at scaffold_5:651706..653293-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2557 ID=mRNA_2557|Name=jgi.p|Nanoce1779_2|580771|organism=Nannochloropsis oceanica|type=mRNA|length=1588bp|location=Sequence derived from alignment at scaffold_5:651706..653293- (Nannochloropsis oceanica)
ACAGGAATTCGACGTCCTGCCCCATCACTCCTTGCATAACGAGCACGCCT
TCATCCGTCACTACATCCATCAACTCTTTCTCCACAAACGAAATCATGAC
AACAGCCATAGGTATGCTTTCTCTCTCTGTTGTGCCTCGCTTTGCCTTGT
CATACCATTTTTTTTTCTGCATGTTTTGACGTGTTCTGTGAGACTGGTGC
TCCCTCCCTGGCTTGCCATTTTGTCGCATATCTCTGGAGTGTGTGGTGAG
CGTCTCAATATCTCATTTCAAATGTCAACGCCCATGCCTGTATATGTCAT
CGTCCCACTGCCTTCCTGGCCCATGATTTGAATCCTTATTCCACAGCGGC
CGTCGTGCCACTAGCATGCACCTTGTCTGCTTTCATCGCCCCCCTCCTCT
GATCTTTTCCCCTCTCCCCGCATGTGTATCATGTTTCCCAAGGCCATCCT
ACGGTGTCCCGCTCCCCAGTAATTTTCTTCTACTCTTCTCTCGTACCCCT
CTAATTTCTTCTCTCGTCATTCCATTCCGTTCATTCATCTACAGGCATGA
TGGACGCCGGATACTTTGTTGGCCGGAAGGAAATCGTGGACTGGGTGAAT
GAAACGCTGCAGTTGAGCCTGAGCAAAGTGGAGCAGACTGCCTCGGGTGC
CGTGGCATGCCAGTTGCTTGACCGCATTTACCCGGGCAAGGTCCCCCTTG
GCAAGGTAAACTGGGATGCCAAGCTGGATTACGAATTTTTAAGTAACTAC
AAGATACTTCAGAATGCCTTTACCAGGCTGAAGATCGATAAACATCTGCC
GGTGGAAAAACTGGTTAGGGCCAAGTACCAAGATAATTTGGAGTTTATGC
AGTGGTTCAAGCGCTTCTACGAGCTCAATAACCCGGCGCTCGACTACGAC
CCCGTCGCCGCTCGCGCAGGGGGTAAGGGTGCTGGAGGGGCTGCCCGTAT
CCTGCCGGCTGCGGGATCATCCTTTTCCAATAGTACAAGGGTGGGGGGCA
CCCCGAGCAAGCCTGTGGCAGGCCGCTCCAACTCCCGCAGCATTGGTAGC
AGCGCCAGCACTAGTTATACTTCCGGCTGTGTGGCTCGGGATAAGGAGAA
TGGTGGCAGCCGGACGATAAGCAATAAGCCCAAGGTGGCTTCTGTGCCTT
TGATGGACGAGGTGCTGGTGCAGAAAGCCGAGGCGCTGCAACAGGAAAAC
GCAACCCTCCAAGCCACCATTGAGGGTTTGGAGAAGGAGCGGGACTTCTA
CTTTGAGAAGCTGACGGTAGTGGAGGAAATGCTGCAGGAGCGGCAAGCGG
GAGCCGGAGACGATGTCATTCCTGAAGTGGCAGAGCTGGTGGAACAGATT
TTCAAAGTTCTCTACGCTACTGAGAGCACCACCGCCCCTCCCGCCAGCGT
TGTCAGCGTGGAGTCATCCGAGGCCGCGGCGGCGGCTGTGGCGGCACCTT
CTGCCGTCGTTTAAATGTTGGGACGCGAACGTAACAAAGGGAGGAAATGG
TGAATGGGTTTTGGAGCCGACACTTTGGCAGCAGCAGCGGAAGCAGGGGC
AAGGGAACGAGAGGAAAGAAGAAGCTAATGTGCAGGAT
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Coding sequence (CDS) from alignment at scaffold_5:651706..653293-

>mRNA_2557 ID=mRNA_2557|Name=jgi.p|Nanoce1779_2|580771|organism=Nannochloropsis oceanica|type=CDS|length=1872bp|location=Sequence derived from alignment at scaffold_5:651706..653293- (Nannochloropsis oceanica)
GCATGATGGACGCCGGATACTTTGTTGGCCGGAAGGAAATCGTGGACTGG
GTGAATGAAACGCTGCAGTTGAGCCTGAGCAAAGTGGAGCAGACTGCCTC
GGGTGCCGTGGCATGCCAGTTGCTTGACCGCATTTACCCGGGCAAGGTCC
CCCTTGGCAAGGTAAACTGGGATGCCAAGCTGGATTACGAATTTTTAAGT
AACTACAAGATACTTCAGAATGCCTTTACCAGGCTGAAGATCGATAAACA
TCTGCCGGTGGAAAAACTGGTTAGGGCCAAGTACCAAGATAATTTGGAGT
TTATGCAGTGGTTCAAGCGCTTCTACGAGCTCAATAACCCGGCGCTCGAC
TACGACCCCGTCGCCGCTCGCGCAGGGGGTAAGGGTGCTGGAGGGGCTGC
CCGTATCCTGCCGGCTGCGGGATCATCCTTTTCCAATAGTACAAGGGTGG
GGGGCACCCCGAGCAAGCCTGTGGCAGGCCGCTCCAACTCCCGCAGCATT
GGTAGCAGCGCCAGCACTAGTTATACTTCCGGCTGTGTGGCTCGGGATAA
GGAGAATGGTGGCAGCCGGACGATAAGCAATAAGCCCAAGGTGGCTTCTG
TGCCTTTGATGGACGAGGTGCTGGTGCAGAAAGCCGAGGCGCTGCAACAG
GAAAACGCAACCCTCCAAGCCACCATTGAGGGTTTGGAGAAGGAGCGGGA
CTTCTACTTTGAGAAGCTGACGGTAGTGGAGGAAATGCTGCAGGAGCGGC
AAGCGGGAGCCGGAGACGATGTCATTCCTGAAGTGGCAGAGCTGGTGGAA
CAGATTTTCAAAGTTCTCTACGCTACTGAGAGCACCACCGCCCCTCCCGC
CAGCGTTGTCAGCGTGGAGTCATCCGAGGCCGCGGCGGCGGCTGTGGCGG
CACCTTCTGCCGTCGTTTAAATGACAACAGCCATAGGCATGATGGACGCC
GGATACTTTGTTGGCCGGAAGGAAATCGTGGACTGGGTGAATGAAACGCT
GCAGTTGAGCCTGAGCAAAGTGGAGCAGACTGCCTCGGGTGCCGTGGCAT
GCCAGTTGCTTGACCGCATTTACCCGGGCAAGGTCCCCCTTGGCAAGGTA
AACTGGGATGCCAAGCTGGATTACGAATTTTTAAGTAACTACAAGATACT
TCAGAATGCCTTTACCAGGCTGAAGATCGATAAACATCTGCCGGTGGAAA
AACTGGTTAGGGCCAAGTACCAAGATAATTTGGAGTTTATGCAGTGGTTC
AAGCGCTTCTACGAGCTCAATAACCCGGCGCTCGACTACGACCCCGTCGC
CGCTCGCGCAGGGGGTAAGGGTGCTGGAGGGGCTGCCCGTATCCTGCCGG
CTGCGGGATCATCCTTTTCCAATAGTACAAGGGTGGGGGGCACCCCGAGC
AAGCCTGTGGCAGGCCGCTCCAACTCCCGCAGCATTGGTAGCAGCGCCAG
CACTAGTTATACTTCCGGCTGTGTGGCTCGGGATAAGGAGAATGGTGGCA
GCCGGACGATAAGCAATAAGCCCAAGGTGGCTTCTGTGCCTTTGATGGAC
GAGGTGCTGGTGCAGAAAGCCGAGGCGCTGCAACAGGAAAACGCAACCCT
CCAAGCCACCATTGAGGGTTTGGAGAAGGAGCGGGACTTCTACTTTGAGA
AGCTGACGGTAGTGGAGGAAATGCTGCAGGAGCGGCAAGCGGGAGCCGGA
GACGATGTCATTCCTGAAGTGGCAGAGCTGGTGGAACAGATTTTCAAAGT
TCTCTACGCTACTGAGAGCACCACCGCCCCTCCCGCCAGCGTTGTCAGCG
TGGAGTCATCCGAGGCCGCGGCGGCGGCTGTGGCGGCACCTTCTGCCGTC
GTTTAAATGACAACAGCCATAG
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Synonyms
Publications