jgi.p|Nanoce1779_2|580769, mRNA_2556 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580769
Unique NamemRNA_2556
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1154
Alignment locationscaffold_5:650577..651730 +

Link to JBrowse

Properties
Property NameValue
TranscriptId580855
TrackFilteredModels2
ProteinId580769
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:650577..651730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580769gene_2556Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580769mRNA_2556-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2556CDS_2556Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2556 ID=mRNA_2556|Name=jgi.p|Nanoce1779_2|580769|organism=Nannochloropsis oceanica|type=mRNA|length=1154bp
ACAGAGCATGCGGGCTTTCCCCCCCACTTTTACCATAACGACGCTCAGCC
TCGTTCAGATCGCCGTGTTGTCTACTCGCGGAGCCAGCGGATTTGTTGTG
CCAGCTGCCGCTTCCAAAGCTTTCCTCTTCACGCAAGCCGCCCAATCGGC
CAACGCCGCTATCTCCCGTAAGCGCACTGCCGGTGCGCCTCGAATGCTCT
TTACCCGCATGTTTGGTGGGACACCAGCGCCGGACCCGGCCACTAATCTG
GCTACTAAGCCTGCCTTGACCAAGATTAAAACCGAGGACGAATGGAAGCA
AATTCTCTCGCCCACGGCCTTCAAGGTGCTCCGTCGCAAGGCTACCGAGC
CTCGTAAGGTGAACATGGCAAAGGGTGGATGGGACGATCACACAGCCAAG
GGAACGTACGTCTGCACGGGATGCAAGACTCCTTTGTACACCTCGGCGAT
GAAGTTTGACTGTGGGTGTGGATGGCCCGGGTTTTGGACCAACATCAAGG
ATGCCGTATATGAGCAGCGTGATTCGGATGGCTTCCGTTGCGAGATTCTG
TGCTCGGAGTGCGATGGACACTTGGGCCATGTTTTCCGAAATGAGGGATT
CGGGAACCCGCCTCCTGATGAGCGGCACTGTGTGAATTCGGTGTCGGTGG
GCTTTATTCCGGAGGGAAAGGATGTAATCCAGCCTTGCACCTATGAGGGG
CCTGTTTACGAGTAGGTGGGGGGGTAAGCTTCTGGTAGCGAATGAATGAT
AAGATTGGAAGCAGATGGAAAGGAAGAGGCCGGGTGGACGGCGAGAAGCA
AGAGATATCGGCAGCTGAGGCTGGGAATCCCGAGGCTTGCTCTTCTTTTC
CTCTTGCTCTTTTCGGGGCACAAAACACGCAATCTATGCAAGCGGTAGAA
AAGACATTATGAGCAAACGCAGAATTTGTTCTCCGTTTAAAATATTGTCT
CGCAGCTTTCTGCGGTTTTGGTTGTTACTTTTATTCCCATGGGGTTCTTG
CCGTCCCCCCGCCGGCGATACGTGATCCTCATACTATGTTCTATTCAGCA
TACCCACTCCGTTCCGTGCTCTTTTTCATCCATCTTGCCGTCAATTCGCG
TGCCACACACTATCTGTCTCTTAGCCTCCATCCTGCACATTAGCTTCTTC
TTTC
back to top

protein sequence of jgi.p|Nanoce1779_2|580769

>mRNA_2556-protein ID=mRNA_2556-protein|Name=jgi.p|Nanoce1779_2|580769|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MRAFPPTFTITTLSLVQIAVLSTRGASGFVVPAAASKAFLFTQAAQSANA
AISRKRTAGAPRMLFTRMFGGTPAPDPATNLATKPALTKIKTEDEWKQIL
SPTAFKVLRRKATEPRKVNMAKGGWDDHTAKGTYVCTGCKTPLYTSAMKF
DCGCGWPGFWTNIKDAVYEQRDSDGFRCEILCSECDGHLGHVFRNEGFGN
PPPDERHCVNSVSVGFIPEGKDVIQPCTYEGPVYE*
back to top

mRNA from alignment at scaffold_5:650577..651730+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2556 ID=mRNA_2556|Name=jgi.p|Nanoce1779_2|580769|organism=Nannochloropsis oceanica|type=mRNA|length=1154bp|location=Sequence derived from alignment at scaffold_5:650577..651730+ (Nannochloropsis oceanica)
ACAGAGCATGCGGGCTTTCCCCCCCACTTTTACCATAACGACGCTCAGCC
TCGTTCAGATCGCCGTGTTGTCTACTCGCGGAGCCAGCGGATTTGTTGTG
CCAGCTGCCGCTTCCAAAGCTTTCCTCTTCACGCAAGCCGCCCAATCGGC
CAACGCCGCTATCTCCCGTAAGCGCACTGCCGGTGCGCCTCGAATGCTCT
TTACCCGCATGTTTGGTGGGACACCAGCGCCGGACCCGGCCACTAATCTG
GCTACTAAGCCTGCCTTGACCAAGATTAAAACCGAGGACGAATGGAAGCA
AATTCTCTCGCCCACGGCCTTCAAGGTGCTCCGTCGCAAGGCTACCGAGC
CTCGTAAGGTGAACATGGCAAAGGGTGGATGGGACGATCACACAGCCAAG
GGAACGTACGTCTGCACGGGATGCAAGACTCCTTTGTACACCTCGGCGAT
GAAGTTTGACTGTGGGTGTGGATGGCCCGGGTTTTGGACCAACATCAAGG
ATGCCGTATATGAGCAGCGTGATTCGGATGGCTTCCGTTGCGAGATTCTG
TGCTCGGAGTGCGATGGACACTTGGGCCATGTTTTCCGAAATGAGGGATT
CGGGAACCCGCCTCCTGATGAGCGGCACTGTGTGAATTCGGTGTCGGTGG
GCTTTATTCCGGAGGGAAAGGATGTAATCCAGCCTTGCACCTATGAGGGG
CCTGTTTACGAGTAGGTGGGGGGGTAAGCTTCTGGTAGCGAATGAATGAT
AAGATTGGAAGCAGATGGAAAGGAAGAGGCCGGGTGGACGGCGAGAAGCA
AGAGATATCGGCAGCTGAGGCTGGGAATCCCGAGGCTTGCTCTTCTTTTC
CTCTTGCTCTTTTCGGGGCACAAAACACGCAATCTATGCAAGCGGTAGAA
AAGACATTATGAGCAAACGCAGAATTTGTTCTCCGTTTAAAATATTGTCT
CGCAGCTTTCTGCGGTTTTGGTTGTTACTTTTATTCCCATGGGGTTCTTG
CCGTCCCCCCGCCGGCGATACGTGATCCTCATACTATGTTCTATTCAGCA
TACCCACTCCGTTCCGTGCTCTTTTTCATCCATCTTGCCGTCAATTCGCG
TGCCACACACTATCTGTCTCTTAGCCTCCATCCTGCACATTAGCTTCTTC
TTTC
back to top

Coding sequence (CDS) from alignment at scaffold_5:650577..651730+

>mRNA_2556 ID=mRNA_2556|Name=jgi.p|Nanoce1779_2|580769|organism=Nannochloropsis oceanica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_5:650577..651730+ (Nannochloropsis oceanica)
ATGCGGGCTTTCCCCCCCACTTTTACCATAACGACGCTCAGCCTCGTTCA
GATCGCCGTGTTGTCTACTCGCGGAGCCAGCGGATTTGTTGTGCCAGCTG
CCGCTTCCAAAGCTTTCCTCTTCACGCAAGCCGCCCAATCGGCCAACGCC
GCTATCTCCCGTAAGCGCACTGCCGGTGCGCCTCGAATGCTCTTTACCCG
CATGTTTGGTGGGACACCAGCGCCGGACCCGGCCACTAATCTGGCTACTA
AGCCTGCCTTGACCAAGATTAAAACCGAGGACGAATGGAAGCAAATTCTC
TCGCCCACGGCCTTCAAGGTGCTCCGTCGCAAGGCTACCGAGCCTCGTAA
GGTGAACATGGCAAAGGGTGGATGGGACGATCACACAGCCAAGGGAACGT
ACGTCTGCACGGGATGCAAGACTCCTTTGTACACCTCGGCGATGAAGTTT
GACTGTGGGTGTGGATGGCCCGGGTTTTGGACCAACATCAAGGATGCCGT
ATATGAGCAGCGTGATTCGGATGGCTTCCGTTGCGAGATTCTGTGCTCGG
AGTGCGATGGACACTTGGGCCATGTTTTCCGAAATGAGGGATTCGGGAAC
CCGCCTCCTGATGAGCGGCACTGTGTGAATTCGGTGTCGGTGGGCTTTAT
TCCGGAGGGAAAGGATGTAATCCAGCCTTGCACCTATGAGGGGCCTGTTT
ACGAGTAG
back to top
Synonyms
Publications