jgi.p|Nanoce1779_2|332244, mRNA_2554 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|332244
Unique NamemRNA_2554
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1265
Alignment locationscaffold_5:644718..646223 -

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Properties
Property NameValue
TranscriptId332330
TrackFilteredModels2
ProteinId332244
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:644718..646223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|332244gene_2554Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|332244mRNA_2554-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2554CDS_2554Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2554 ID=mRNA_2554|Name=jgi.p|Nanoce1779_2|332244|organism=Nannochloropsis oceanica|type=mRNA|length=1265bp
CCCCCTTGCCCCATAACCACCACGACAATCCCCAGGGCTTTGTCCTACTC
CGCCACTATGGTAGGTCCTCGTTCTCGCCACCCAAGTCACCATTCCCACC
GTTCCTTTCCCGCACAGTGGCTTTTTCTTCCCTCCACACATAATGGCGCT
CGTAAACTTGACCAACATCGTGGTGCTGGACAACCCCACCAGCTTCACGA
ACCCCTTCACATTCGAGGTCACCTTTGAGTGCGTGCAAGAGCTCGAAGAC
GACTTGGAATGGAAGGTGCTCTACGTTTCATCGGCGGAAAATGCGGAGCA
GGACCAGGTACTGGAGGAAGTGATGGTCGGCCCCGTGCCCGTGGGTGTGA
ACAAATTCGTGCTGCAATCGGAGCCCCCGGACGTGAGTCGTATTCCCGAG
GAAGACATCATCGGCGTGACCGTCATCCTCATAACCTGCTCCTACCGCGA
GCAAGAATTTGTCCGCGTCGGCTACTACGTCAACAACGAGTACGCGGAGG
CATTTGATCCTGAAAACCCTCCACGGCCCGTGGATCTGGGAAAGCTGGTG
CGTAACATTCTTGCTGACAAGCCACGTGTTACGCGCTTCCCGGTCGACTG
GGGCCTGGGTGCGGGGGTGGAAGGCGGGCAACAACCGCAGGTCACGGAGG
AGGAGGCGGCCGCGGAGGGGGTGGTGGATTTCGACGCGCTGGACCAGCAG
GCTGGGGATGAGGACGAGGAAGAGGAAGGCGGGGAGGACGGAGACGGGGA
CGAGGATCGGGACGTGGGGGAGGAGGACAGTGACGAGCCCGGGGGGTTGC
ATGAGGGGGGGGCGATGGACATGGAGATGGTGTCGCCCGCTTTTAAAGGC
TCGGTGGCACGGGGAGACAGCATGTCAGAGTCCCCCCCTCTTTACGCGGC
TTCATCGTGACTTATTTGTCGCTGAAGCTGAAATGTACGAGAGCGAAGAG
GAAATGATTAGGAGAACGAAGAGAGAAGAGATGAAAAGTAGTGTTGGGAC
GAGAGGAAAGCTGAAGATGATGTGGTCGGCGTGTTTATATCAGGGAGAGA
AGAAGAAACCGAAAGTCAGAAGGAAAAAAGGGTAAAGAAATGTGATGGGA
TAGTGTGACAAGAAGGAAAGATGAAGGACATTTGTGTGCGGATCAGACAA
GCAAGAAGAGTGCAGGAGATGGGAGAGGCACGTGCCGTACCCGAAATTGC
AGCTCATGACAACGAACGGCTCACCCATCAAGAGTAAAGAATAGAACCGT
GTGTGTAATTTCTTA
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protein sequence of jgi.p|Nanoce1779_2|332244

>mRNA_2554-protein ID=mRNA_2554-protein|Name=jgi.p|Nanoce1779_2|332244|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELEDDLEWKVLYVSSAEN
AEQDQVLEEVMVGPVPVGVNKFVLQSEPPDVSRIPEEDIIGVTVILITCS
YREQEFVRVGYYVNNEYAEAFDPENPPRPVDLGKLVRNILADKPRVTRFP
VDWGLGAGVEGGQQPQVTEEEAAAEGVVDFDALDQQAGDEDEEEEGGEDG
DGDEDRDVGEEDSDEPGGLHEGGAMDMEMVSPAFKGSVARGDSMSESPPL
YAASS*
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mRNA from alignment at scaffold_5:644718..646223-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2554 ID=mRNA_2554|Name=jgi.p|Nanoce1779_2|332244|organism=Nannochloropsis oceanica|type=mRNA|length=1506bp|location=Sequence derived from alignment at scaffold_5:644718..646223- (Nannochloropsis oceanica)
CCCCCTTGCCCCATAACCACCACGACAATCCCCAGGGCTTTGTCCTACTC
CGCCACTATGGTAGGTCCTCGTTCTCGCCACCCAAGTCACCATTCCCACC
GTTCCTTTCCCGCACAGTGGCTTTTTCTTCCCTCCACACATAATGGCGCT
CGTAAACTTGACCAACATCGTGGTGCTGGACAACCCCACCAGCTTCACGA
ACCCCTTCACATTCGAGGTCACCTTTGAGTGCGTGCAAGAGCTCGAAGAC
GGTATGTGGCTTGGTGGTATGTGTGTGTGTCAGAGGGGAGGGGGGTTGTA
ATATTTTGAGTAGAGACAATCTCGTGGGAACGGAGGGTCTTCCTTCAGGG
CAGGACTTTTCCCTGGTTCCCTTCGAGCCCACGCGTGTGCAACCCTCTCT
CTATCCAGTTGTATCTCTTTTAAGCAAGCACTACATGTCGGTTCTGCCGC
TTTCACCATCTTGTCCTCATTTCCTACCCACCCAACCCTCAGACTTGGAA
TGGAAGGTGCTCTACGTTTCATCGGCGGAAAATGCGGAGCAGGACCAGGT
ACTGGAGGAAGTGATGGTCGGCCCCGTGCCCGTGGGTGTGAACAAATTCG
TGCTGCAATCGGAGCCCCCGGACGTGAGTCGTATTCCCGAGGAAGACATC
ATCGGCGTGACCGTCATCCTCATAACCTGCTCCTACCGCGAGCAAGAATT
TGTCCGCGTCGGCTACTACGTCAACAACGAGTACGCGGAGGCATTTGATC
CTGAAAACCCTCCACGGCCCGTGGATCTGGGAAAGCTGGTGCGTAACATT
CTTGCTGACAAGCCACGTGTTACGCGCTTCCCGGTCGACTGGGGCCTGGG
TGCGGGGGTGGAAGGCGGGCAACAACCGCAGGTCACGGAGGAGGAGGCGG
CCGCGGAGGGGGTGGTGGATTTCGACGCGCTGGACCAGCAGGCTGGGGAT
GAGGACGAGGAAGAGGAAGGCGGGGAGGACGGAGACGGGGACGAGGATCG
GGACGTGGGGGAGGAGGACAGTGACGAGCCCGGGGGGTTGCATGAGGGGG
GGGCGATGGACATGGAGATGGTGTCGCCCGCTTTTAAAGGCTCGGTGGCA
CGGGGAGACAGCATGTCAGAGTCCCCCCCTCTTTACGCGGCTTCATCGTG
ACTTATTTGTCGCTGAAGCTGAAATGTACGAGAGCGAAGAGGAAATGATT
AGGAGAACGAAGAGAGAAGAGATGAAAAGTAGTGTTGGGACGAGAGGAAA
GCTGAAGATGATGTGGTCGGCGTGTTTATATCAGGGAGAGAAGAAGAAAC
CGAAAGTCAGAAGGAAAAAAGGGTAAAGAAATGTGATGGGATAGTGTGAC
AAGAAGGAAAGATGAAGGACATTTGTGTGCGGATCAGACAAGCAAGAAGA
GTGCAGGAGATGGGAGAGGCACGTGCCGTACCCGAAATTGCAGCTCATGA
CAACGAACGGCTCACCCATCAAGAGTAAAGAATAGAACCGTGTGTGTAAT
TTCTTA
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Coding sequence (CDS) from alignment at scaffold_5:644718..646223-

>mRNA_2554 ID=mRNA_2554|Name=jgi.p|Nanoce1779_2|332244|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at scaffold_5:644718..646223- (Nannochloropsis oceanica)
ACTTGGAATGGAAGGTGCTCTACGTTTCATCGGCGGAAAATGCGGAGCAG
GACCAGGTACTGGAGGAAGTGATGGTCGGCCCCGTGCCCGTGGGTGTGAA
CAAATTCGTGCTGCAATCGGAGCCCCCGGACGTGAGTCGTATTCCCGAGG
AAGACATCATCGGCGTGACCGTCATCCTCATAACCTGCTCCTACCGCGAG
CAAGAATTTGTCCGCGTCGGCTACTACGTCAACAACGAGTACGCGGAGGC
ATTTGATCCTGAAAACCCTCCACGGCCCGTGGATCTGGGAAAGCTGGTGC
GTAACATTCTTGCTGACAAGCCACGTGTTACGCGCTTCCCGGTCGACTGG
GGCCTGGGTGCGGGGGTGGAAGGCGGGCAACAACCGCAGGTCACGGAGGA
GGAGGCGGCCGCGGAGGGGGTGGTGGATTTCGACGCGCTGGACCAGCAGG
CTGGGGATGAGGACGAGGAAGAGGAAGGCGGGGAGGACGGAGACGGGGAC
GAGGATCGGGACGTGGGGGAGGAGGACAGTGACGAGCCCGGGGGGTTGCA
TGAGGGGGGGGCGATGGACATGGAGATGGTGTCGCCCGCTTTTAAAGGCT
CGGTGGCACGGGGAGACAGCATGTCAGAGTCCCCCCCTCTTTACGCGGCT
TCATCGTGAATGGCGCTCGTAAACTTGACCAACATCGTGGTGCTGGACAA
CCCCACCAGCTTCACGAACCCCTTCACATTCGAGGTCACCTTTGAGTGCG
TGCAAGAGCTCGAAGACGACTTGGAATGGAAGGTGCTCTACGTTTCATCG
GCGGAAAATGCGGAGCAGGACCAGGTACTGGAGGAAGTGATGGTCGGCCC
CGTGCCCGTGGGTGTGAACAAATTCGTGCTGCAATCGGAGCCCCCGGACG
TGAGTCGTATTCCCGAGGAAGACATCATCGGCGTGACCGTCATCCTCATA
ACCTGCTCCTACCGCGAGCAAGAATTTGTCCGCGTCGGCTACTACGTCAA
CAACGAGTACGCGGAGGCATTTGATCCTGAAAACCCTCCACGGCCCGTGG
ATCTGGGAAAGCTGGTGCGTAACATTCTTGCTGACAAGCCACGTGTTACG
CGCTTCCCGGTCGACTGGGGCCTGGGTGCGGGGGTGGAAGGCGGGCAACA
ACCGCAGGTCACGGAGGAGGAGGCGGCCGCGGAGGGGGTGGTGGATTTCG
ACGCGCTGGACCAGCAGGCTGGGGATGAGGACGAGGAAGAGGAAGGCGGG
GAGGACGGAGACGGGGACGAGGATCGGGACGTGGGGGAGGAGGACAGTGA
CGAGCCCGGGGGGTTGCATGAGGGGGGGGCGATGGACATGGAGATGGTGT
CGCCCGCTTTTAAAGGCTCGGTGGCACGGGGAGACAGCATGTCAGAGTCC
CCCCCTCTTTACGCGGCTTCATCGTGAATGGCGCTCGTAAACTTGACCAA
CATCGTGGTGCTGGACAACCCCACCAGCTTCACGAACCCCTTCACATTCG
AGGTCACCTTTGAGTGCGTGCAAGAGCTCGAAGACG
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Synonyms
Publications