jgi.p|Nanoce1779_2|580758, mRNA_2553 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580758
Unique Name	mRNA_2553
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1987
Alignment location	scaffold_5:642538..644717 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580844
Track	FilteredModels2
ProteinId	580758

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:642538..644717 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580758	gene_2553	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580758	mRNA_2553-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2553	CDS_2553	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:642538..644717+
coding sequence from alignment at scaffold_5:642538..644717+

mRNA sequence

>mRNA_2553 ID=mRNA_2553|Name=jgi.p|Nanoce1779_2|580758|organism=Nannochloropsis oceanica|type=mRNA|length=1987bp
GCAGCAGGATCAGGTCGAGGAGATACATGAGGCGGCGCGCGGAGCACACA
ACAATGTGGGCCAGGCAAACCACGAGCTCCTTTCGACGCTCGACCGCAAC
AGCAAGGCGAGTCAGACCATGCTCACATTCGTCTTTGTCCTTTGTATCGC
CCTCCTCATCCTCGACCAGGCCATTCCATAGCGATTTATCGTTGCTTTCA
AGAAATGAAAATAAACAAGTGTACACACCAACACGAAGGGCTGCTGCTCG
TGCCCTGACTCGTTTCTCTCACCTTTCGCCACCGCAAGCGGATTGGCAGC
TTATTCCAGAAACTCGTGTTTGTTCCACGCACAAATTATATACTTTACAC
ACCACTTGACAGAGAAATACTCTTCAAAACGACTATGTAGGTGGTCCTCT
CGCTATTTGTTCTTGAGCGGCTGCCGTTTCTCATATGTGCGCATTCATCC
TTTCCCCCTGTCAGCAAACGCTTATCGTCATCGCCCACCCACATCACACC
AGATCGTCGCCGTAACTGGCTGGCAACTTGGGCTCCGCCACAGCGTCCTG
CCACCACCATGTTCGAGAACAGTGCCATCCTCGGTGGACGACACTCAGAT
GTGCTGGACGCGCACCCAGACACAGAAGAGAGCAAGCTCGCGCTTGTCGA
GGAAATCAAGAATCGAGCAAGGGGTATTTTTGCCGCGGGCAACCTGCCCG
AGGCAGAACTTCTCTATGACAAGGCCATTGCCATTAAGCCCGATGCCGTC
TTGTTTGCAAACCGAGCTGCTGTTCGCCTTGGTCTAAATCTCACTGACTC
AGCACTCGCAGACGCCTGCAAGGCCATCGAGATCGATCCAAAATACAGCA
AGGCGTACTACCGGAAGGGACAAGCACACAACGCGCGCAGGGAACATGAG
TCGGCCGTGGACGCTTTTGAAAAAGGAATGGAACTTGATCCCGGCAACCG
AAGTTTTCGAGAATGTGCAACCAAGGCCAAGGCTGCAGCTGCAAAACTCG
CAGAGGAAGCTGCCAAAACACCATCCCCTCCACCATTTACAACTCCGGCA
ACGGCGACAACGACGACGACGACCACCACCACAAGCAATAGCAGCCTCCT
CCTGGCGGCACCAGGACATACCGGCAGCAAAAAGAAGAAGCCAAAGAAGA
AGGAAGGGGAGGCGGGAGGGGGCTTGGGTGAGGAGGATAATAGTGGGGAG
GAAGACGTAATAATCAAAGCGGAAGCCATGCGAGGGTACAAGGTTCTCGA
GGATGGGCGAAAGACAACCTATTTTAACAACACGCTCTCGGAGGAGGCTC
GGCGCTTAATAGGCGATATCGCCCCGAAGAAGATCGAAATGCCGGAGGGC
GGCGGGGTCGGCGGGGAGGGTACGGCGGGCTCGGCGTGGAATTATGCGGG
AACTTTCGAGGAGCGGAATATGACCGAGTGGGCGACGGGCCGATTACAGG
AGCTGCTATCGGAGGTGTGTTTTTCAGTTCCGAGGGAAGGTGTGGGTGCG
GGGGTAGAGGAAGGGGGGAGATTTGATGTGAAGAAGGTGACGGGGCTCGA
GGGGGATGCGTCGGTCACGTTTGTTAGGGGAAAGAAAAAGTATTTGTTTG
ATTTTGTGTTTACTCTGGAGTGGGAGATTGGGCTTTTGGGGGGGGGGAAG
GCGAAGGGGACGTTGAAATACCCGGATGTGACGCCGGATAATGACGACGA
GTATGATACGCTTTTGGAGGTTGACCAGCTGACTCCGCCTGAGGCAAGGC
CGCTAATAAACGCTTATGTCAAGAGTTCCAGCGCGGGTCTGCAGCAGATG
GTGAGGGAGAAGTTGCAGCAATTCATGACGGAATATCAGGCCTTATAGAA
TGCATTGGAGGAGAAGCAAAGTGGGAAACCGGGGAGTCGATGTTGAGGAG
CAAATCGCGCGGTCGGGGGTTGGGACGGAGGTGGTGAGACGAAGACGAAG
AAAGATAGCCAATGACACGCATACGTTTAAGATGTGG

protein sequence of jgi.p|Nanoce1779_2|580758

>mRNA_2553-protein ID=mRNA_2553-protein|Name=jgi.p|Nanoce1779_2|580758|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MFENSAILGGRHSDVLDAHPDTEESKLALVEEIKNRARGIFAAGNLPEAE
LLYDKAIAIKPDAVLFANRAAVRLGLNLTDSALADACKAIEIDPKYSKAY
YRKGQAHNARREHESAVDAFEKGMELDPGNRSFRECATKAKAAAAKLAEE
AAKTPSPPPFTTPATATTTTTTTTTSNSSLLLAAPGHTGSKKKKPKKKEG
EAGGGLGEEDNSGEEDVIIKAEAMRGYKVLEDGRKTTYFNNTLSEEARRL
IGDIAPKKIEMPEGGGVGGEGTAGSAWNYAGTFEERNMTEWATGRLQELL
SEVCFSVPREGVGAGVEEGGRFDVKKVTGLEGDASVTFVRGKKKYLFDFV
FTLEWEIGLLGGGKAKGTLKYPDVTPDNDDEYDTLLEVDQLTPPEARPLI
NAYVKSSSAGLQQMVREKLQQFMTEYQAL*

mRNA from alignment at scaffold_5:642538..644717+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2553 ID=mRNA_2553|Name=jgi.p|Nanoce1779_2|580758|organism=Nannochloropsis oceanica|type=mRNA|length=2180bp|location=Sequence derived from alignment at scaffold_5:642538..644717+ (Nannochloropsis oceanica)
GCAGCAGGATCAGGTCGAGGAGATACATGAGGCGGCGCGCGGAGCACACA
ACAATGTGGGCCAGGCAAACCACGAGCTCCTTTCGACGCTCGACCGCAAC
AGCAAGGCGAGTCAGACCATGCTCACATTCGTCTTTGTCCTTTGTATCGC
CCTCCTCATCCTCGACCAGGCCATTCCATAGCGATTTATCGTTGCTTTCA
AGAAATGAAAATAAACAAGTGTACACACCAACACGAAGGGCTGCTGCTCG
TGCCCTGACTCGTTTCTCTCACCTTTCGCCACCGCAAGCGGATTGGCAGC
TTATTCCAGAAACTCGTGTTTGTTCCACGCACAAATTATATACTTTACAC
ACCACTTGACAGAGAAATACTCTTCAAAACGACTATGTAGGTGGTCCTCT
CGCTATTTGTTCTTGAGCGGCTGCCGTTTCTCATATGTGCGCATTCATCC
TTTCCCCCTGTCAGCAAACGCTTATCGTCATCGCCCACCCACATCACACC
AGATCGTCGCCGTAACTGGCTGGCAACTTGGGCTCCGCCACAGCGTCCTG
CCACCACCATGTTCGAGAACAGTGCCATCCTCGGTGGACGACACTCAGAT
GTGCTGGACGCGCACCCAGACACAGAAGAGAGCAAGCTCGCGCTTGTCGA
GGAAATCAAGAATCGAGCAAGGTAGAGATAGGGTGGGGAGGAAGGAGAGA
GAGGGAGGAGGCTGAATTTGCGGGTGCTACCCATGTGTCGCTCAGACCCA
TGTATAGGACGCAATGGCAAAAGTGGGAGGAGTGAAAGTCAGCCTCATGC
ACTCGGACTCACATCACACGCACATTCCTCTTTGCGTTTTCCTACCAACT
GAACTACTGAACAGGGGTATTTTTGCCGCGGGCAACCTGCCCGAGGCAGA
ACTTCTCTATGACAAGGCCATTGCCATTAAGCCCGATGCCGTCTTGTTTG
CAAACCGAGCTGCTGTTCGCCTTGGTCTAAATCTCACTGACTCAGCACTC
GCAGACGCCTGCAAGGCCATCGAGATCGATCCAAAATACAGCAAGGCGTA
CTACCGGAAGGGACAAGCACACAACGCGCGCAGGGAACATGAGTCGGCCG
TGGACGCTTTTGAAAAAGGAATGGAACTTGATCCCGGCAACCGAAGTTTT
CGAGAATGTGCAACCAAGGCCAAGGCTGCAGCTGCAAAACTCGCAGAGGA
AGCTGCCAAAACACCATCCCCTCCACCATTTACAACTCCGGCAACGGCGA
CAACGACGACGACGACCACCACCACAAGCAATAGCAGCCTCCTCCTGGCG
GCACCAGGACATACCGGCAGCAAAAAGAAGAAGCCAAAGAAGAAGGAAGG
GGAGGCGGGAGGGGGCTTGGGTGAGGAGGATAATAGTGGGGAGGAAGACG
TAATAATCAAAGCGGAAGCCATGCGAGGGTACAAGGTTCTCGAGGATGGG
CGAAAGACAACCTATTTTAACAACACGCTCTCGGAGGAGGCTCGGCGCTT
AATAGGCGATATCGCCCCGAAGAAGATCGAAATGCCGGAGGGCGGCGGGG
TCGGCGGGGAGGGTACGGCGGGCTCGGCGTGGAATTATGCGGGAACTTTC
GAGGAGCGGAATATGACCGAGTGGGCGACGGGCCGATTACAGGAGCTGCT
ATCGGAGGTGTGTTTTTCAGTTCCGAGGGAAGGTGTGGGTGCGGGGGTAG
AGGAAGGGGGGAGATTTGATGTGAAGAAGGTGACGGGGCTCGAGGGGGAT
GCGTCGGTCACGTTTGTTAGGGGAAAGAAAAAGTATTTGTTTGATTTTGT
GTTTACTCTGGAGTGGGAGATTGGGCTTTTGGGGGGGGGGAAGGCGAAGG
GGACGTTGAAATACCCGGATGTGACGCCGGATAATGACGACGAGTATGAT
ACGCTTTTGGAGGTTGACCAGCTGACTCCGCCTGAGGCAAGGCCGCTAAT
AAACGCTTATGTCAAGAGTTCCAGCGCGGGTCTGCAGCAGATGGTGAGGG
AGAAGTTGCAGCAATTCATGACGGAATATCAGGCCTTATAGAATGCATTG
GAGGAGAAGCAAAGTGGGAAACCGGGGAGTCGATGTTGAGGAGCAAATCG
CGCGGTCGGGGGTTGGGACGGAGGTGGTGAGACGAAGACGAAGAAAGATA
GCCAATGACACGCATACGTTTAAGATGTGG

Coding sequence (CDS) from alignment at scaffold_5:642538..644717+

>mRNA_2553 ID=mRNA_2553|Name=jgi.p|Nanoce1779_2|580758|organism=Nannochloropsis oceanica|type=CDS|length=2580bp|location=Sequence derived from alignment at scaffold_5:642538..644717+ (Nannochloropsis oceanica)
ATGTTCGAGAACAGTGCCATCCTCGGTGGACGACACTCAGATGTGCTGGA
CGCGCACCCAGACACAGAAGAGAGCAAGCTCGCGCTTGTCGAGGAAATCA
AGAATCGAGCAAGGGGTATTTTTGCCGCGGGCAACCTGCCCGAGGCAGAA
CTTCTCTATGACAAGGCCATTGCCATTAAGCCCGATGCCGTCTTGTTTGC
AAACCGAGCTGCTGTTCGCCTTGGTCTAAATCTCACTGACTCAGCACTCG
CAGACGCCTGCAAGGCCATCGAGATCGATCCAAAATACAGCAAGGCGTAC
TACCGGAAGGGACAAGCACACAACGCGCGCAGGGAACATGAGTCGGCCGT
GGACGCTTTTGAAAAAGGAATGGAACTTGATCCCGGCAACCGAAGTTTTC
GAGAATGTGCAACCAAGGCCAAGGCTGCAGCTGCAAAACTCGCAGAGGAA
GCTGCCAAAACACCATCCCCTCCACCATTTACAACTCCGGCAACGGCGAC
AACGACGACGACGACCACCACCACAAGCAATAGCAGCCTCCTCCTGGCGG
CACCAGGACATACCGGCAGCAAAAAGAAGAAGCCAAAGAAGAAGGAAGGG
GAGGCGGGAGGGGGCTTGGGTGAGGAGGATAATAGTGGGGAGGAAGACGT
AATAATCAAAGCGGAAGCCATGCGAGGGTACAAGGTTCTCGAGGATGGGC
GAAAGACAACCTATTTTAACAACACGCTCTCGGAGGAGGCTCGGCGCTTA
ATAGGCGATATCGCCCCGAAGAAGATCGAAATGCCGGAGGGCGGCGGGGT
CGGCGGGGAGGGTACGGCGGGCTCGGCGTGGAATTATGCGGGAACTTTCG
AGGAGCGGAATATGACCGAGTGGGCGACGGGCCGATTACAGGAGCTGCTA
TCGGAGGTGTGTTTTTCAGTTCCGAGGGAAGGTGTGGGTGCGGGGGTAGA
GGAAGGGGGGAGATTTGATGTGAAGAAGGTGACGGGGCTCGAGGGGGATG
CGTCGGTCACGTTTGTTAGGGGAAAGAAAAAGTATTTGTTTGATTTTGTG
TTTACTCTGGAGTGGGAGATTGGGCTTTTGGGGGGGGGGAAGGCGAAGGG
GACGTTGAAATACCCGGATGTGACGCCGGATAATGACGACGAGTATGATA
CGCTTTTGGAGGTTGACCAGCTGACTCCGCCTGAGGCAAGGCCGCTAATA
AACGCTTATGTCAAGAGTTCCAGCGCGGGTCTGCAGCAGATGGTGAGGGA
GAAGTTGCAGCAATTCATGACGGAATATCAGGCCTTATAGATGTTCGAGA
ACAGTGCCATCCTCGGTGGACGACACTCAGATGTGCTGGACGCGCACCCA
GACACAGAAGAGAGCAAGCTCGCGCTTGTCGAGGAAATCAAGAATCGAGC
AAGGGGTATTTTTGCCGCGGGCAACCTGCCCGAGGCAGAACTTCTCTATG
ACAAGGCCATTGCCATTAAGCCCGATGCCGTCTTGTTTGCAAACCGAGCT
GCTGTTCGCCTTGGTCTAAATCTCACTGACTCAGCACTCGCAGACGCCTG
CAAGGCCATCGAGATCGATCCAAAATACAGCAAGGCGTACTACCGGAAGG
GACAAGCACACAACGCGCGCAGGGAACATGAGTCGGCCGTGGACGCTTTT
GAAAAAGGAATGGAACTTGATCCCGGCAACCGAAGTTTTCGAGAATGTGC
AACCAAGGCCAAGGCTGCAGCTGCAAAACTCGCAGAGGAAGCTGCCAAAA
CACCATCCCCTCCACCATTTACAACTCCGGCAACGGCGACAACGACGACG
ACGACCACCACCACAAGCAATAGCAGCCTCCTCCTGGCGGCACCAGGACA
TACCGGCAGCAAAAAGAAGAAGCCAAAGAAGAAGGAAGGGGAGGCGGGAG
GGGGCTTGGGTGAGGAGGATAATAGTGGGGAGGAAGACGTAATAATCAAA
GCGGAAGCCATGCGAGGGTACAAGGTTCTCGAGGATGGGCGAAAGACAAC
CTATTTTAACAACACGCTCTCGGAGGAGGCTCGGCGCTTAATAGGCGATA
TCGCCCCGAAGAAGATCGAAATGCCGGAGGGCGGCGGGGTCGGCGGGGAG
GGTACGGCGGGCTCGGCGTGGAATTATGCGGGAACTTTCGAGGAGCGGAA
TATGACCGAGTGGGCGACGGGCCGATTACAGGAGCTGCTATCGGAGGTGT
GTTTTTCAGTTCCGAGGGAAGGTGTGGGTGCGGGGGTAGAGGAAGGGGGG
AGATTTGATGTGAAGAAGGTGACGGGGCTCGAGGGGGATGCGTCGGTCAC
GTTTGTTAGGGGAAAGAAAAAGTATTTGTTTGATTTTGTGTTTACTCTGG
AGTGGGAGATTGGGCTTTTGGGGGGGGGGAAGGCGAAGGGGACGTTGAAA
TACCCGGATGTGACGCCGGATAATGACGACGAGTATGATACGCTTTTGGA
GGTTGACCAGCTGACTCCGCCTGAGGCAAGGCCGCTAATAAACGCTTATG
TCAAGAGTTCCAGCGCGGGTCTGCAGCAGATGGTGAGGGAGAAGTTGCAG
CAATTCATGACGGAATATCAGGCCTTATAG

Synonyms

Publications