Properties
Property Name | Value |
TranscriptId | 564169 |
Track | FilteredModels2 |
ProteinId | 564083 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_5 | supercontig | scaffold_5:641181..642718 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2552 ID=mRNA_2552|Name=jgi.p|Nanoce1779_2|564083|organism=Nannochloropsis oceanica|type=mRNA|length=900bp ATGACGGAGCAAGAGCGGGATCAGGTGGACCAGGTCATGGCTTCCTTCAT CATCAAGTGCGGCTCTCAAATCGAGATCATTCGCTGTGCACTTGCAGGTG AGGGTGGAATTGAGAGAGGTTGTAGAAAAACGTACGTATCATTTTATCAA ATTCAAATTATATCATACCACCCAGAGGCAAGCTCCCCAGAAGCGGGGGG CGGCAACGCGGCCACGGTTGGCGGCGATGGTTCCCGGTTGGCACATTACG GAGGGGTTGTATCTTATCTTGCCGAGCGACTACAAGACCTGGGGCACACG CTGCAAAGTCTGCAATCCCAACGCCGCAAGCTGAAAGCTATCGTGCCGTT TAGTGGTGGTTTTGGGGGCTCTTCCTCGTCAAGAACCACACCTTGTGCAA GAAGAAGAATGCACATGACGCCACCCCACAGTCCCTCTGCCAGCGGCAGT GGCAATTTAAGCCGTCAACGGAAAGCACAGCCAGTCTTGACACAAAGCAA GCTGGAGGTGGAAGAAGATGAAGCCTTTACGCGGCGAGTGGCAGCACGAG TAGAAGGGAGAAACCGCCAGGAGCAGCAGCAGCGGCAGGTTTTGCTCACG CAGGAGAATCGAGTGCTAACAGTGCGGCTCAACAACGAGCTAGAAGACGT CCGAATGATGGAAGGCAAGATGCTGGAACTCTCGCAGCTATTAGGCCTCT TCACGGGCAAGCTTCTTGAGCAGCAGGATCAGGTCGAGGAGATACATGAG GCGGCGCGCGGAGCACACAACAATGTGGGCCAGGCAAACCACGAGCTCCT TTCGACGCTCGACCGCAACAGCAAGGCGAGTCAGACCATGCTCACATTCG TCTTTGTCCTTTGTATCGCCCTCCTCATCCTCGACCAGGCCATTCCATAG back to topprotein sequence of jgi.p|Nanoce1779_2|564083 >mRNA_2552-protein ID=mRNA_2552-protein|Name=jgi.p|Nanoce1779_2|564083|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp MTEQERDQVDQVMASFIIKCGSQIEIIRCALAGEGGIERGCRKTYVSFYQ IQIISYHPEASSPEAGGGNAATVGGDGSRLAHYGGVVSYLAERLQDLGHT LQSLQSQRRKLKAIVPFSGGFGGSSSSRTTPCARRRMHMTPPHSPSASGS GNLSRQRKAQPVLTQSKLEVEEDEAFTRRVAARVEGRNRQEQQQRQVLLT QENRVLTVRLNNELEDVRMMEGKMLELSQLLGLFTGKLLEQQDQVEEIHE AARGAHNNVGQANHELLSTLDRNSKASQTMLTFVFVLCIALLILDQAIP* back to topmRNA from alignment at scaffold_5:641181..642718+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2552 ID=mRNA_2552|Name=jgi.p|Nanoce1779_2|564083|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp|location=Sequence derived from alignment at scaffold_5:641181..642718+ (Nannochloropsis oceanica) ATGACGGAGCAAGAGCGGGATCAGGTGGACCAGGTCATGGCTTCCTTCAT
CATCAAGTGCGGCTCTCAAATCGAGATCATTCGCTGTGCACTTGCAGGTG
AGGGTGGAATTGAGAGAGGTTGTAGAAAAACGTACGTATCATTTTATCAA
ATTCAAATTATATCATACCACCCAGAGGCAAGCTCCCCAGAAGCGGGGGG
CGGCAACGCGGCCACGGTTGGCGGCGATGGTTCCCGGTTGGCACATTACG
GAGGGGTTGTATCTTATCTTGCCGAGGTACGTGGATGATATGATTGCATG
AGCAGGCTATAGAATGGCATGAAATTCTTCTAGTTTCCGTTCAATCACTC
TGCTTCCTTTCCACAACCCACCCACAGCGACTACAAGACCTGGGGCACAC
GCTGCAAAGTCTGCAATCCCAACGCCGCAAGCTGAAAGCTATCGTGCCGT
TTAGTGGTGGTTTTGGGGGCTCTTCCTCGTCAAGAACCACACCTTGTGCA
AGAAGAAGGTGAGTGGTGGGTTGACTGTAAGACAGGCTCATTTGACTCTT
TTTTTTTCTTCCTTTTTGAACTCGTGACCCATACACGCACAGAATGCACA
TGACGCCACCCCACAGTCCCTCTGCCAGCGGCAGTGGCAATTTAAGCCGT
CAACGGAAAGCACAGCCAGTCTTGACACAAAGCAAGGTTCGTCGTTCCTG
AAGTATGACTGTCATTTATGGATAAATGTGATAAGTTCATTCATTCGCGA
CCGACATCTAAATCATTCCTCATCAGCAGCTCCATGCGGTGATTATGACC
CTTTCGACAGGATGATACTTGACTGATTGTATTGAAGCTACCACTTACCT
GCCCTCCTCCTCTCCCTCCACCCAACAGCTGGAGGTGGAAGAAGATGAAG
CCTTTACGCGGCGAGTGGCAGCACGAGTAGAAGGGAGAAACCGCCAGGAG
CAGCAGCAGCGGCAGGTTTTGCTCACGCAGGAGAATCGAGTGCTAACAGT
GCGGCTCAACAACGAGCTAGAAGACGTCCGGTGCGTGTAGAAAAGAGTGG
CATATGCTGGTTAGGAAATCATAGGTTTATGTATGGGTGCATCCCGATTA
TCATAAGAGAAACGTACACTCCTCACATTCAGCTTTCTGACTCCGAGGCA
AAAGCCTTCTGGCGTATTCACAAAGATTGATCGATTGATTGTTTTAATGA
TTGATTCTTTTTTTCATCGATATTTGACCTTTACAAAATGCCGATTTTAA
CCTCCCACCTACATGATCATGTTTATTCTTCCCGCACACAGAATGATGGA
AGGCAAGATGCTGGAACTCTCGCAGCTATTAGGCCTCTTCACGGGCAAGC
TTCTTGAGCAGCAGGATCAGGTCGAGGAGATACATGAGGCGGCGCGCGGA
GCACACAACAATGTGGGCCAGGCAAACCACGAGCTCCTTTCGACGCTCGA
CCGCAACAGCAAGGCGAGTCAGACCATGCTCACATTCGTCTTTGTCCTTT
GTATCGCCCTCCTCATCCTCGACCAGGCCATTCCATAG back to topCoding sequence (CDS) from alignment at scaffold_5:641181..642718+ >mRNA_2552 ID=mRNA_2552|Name=jgi.p|Nanoce1779_2|564083|organism=Nannochloropsis oceanica|type=CDS|length=4500bp|location=Sequence derived from alignment at scaffold_5:641181..642718+ (Nannochloropsis oceanica) ATGACGGAGCAAGAGCGGGATCAGGTGGACCAGGTCATGGCTTCCTTCAT CATCAAGTGCGGCTCTCAAATCGAGATCATTCGCTGTGCACTTGCAGGTG AGGGTGGAATTGAGAGAGGTTGTAGAAAAACGTACGTATCATTTTATCAA ATTCAAATTATATCATACCACCCAGAGGCAAGCTCCCCAGAAGCGGGGGG CGGCAACGCGGCCACGGTTGGCGGCGATGGTTCCCGGTTGGCACATTACG GAGGGGTTGTATCTTATCTTGCCGAGCGACTACAAGACCTGGGGCACACG CTGCAAAGTCTGCAATCCCAACGCCGCAAGCTGAAAGCTATCGTGCCGTT TAGTGGTGGTTTTGGGGGCTCTTCCTCGTCAAGAACCACACCTTGTGCAA GAAGAAGAATGCACATGACGCCACCCCACAGTCCCTCTGCCAGCGGCAGT GGCAATTTAAGCCGTCAACGGAAAGCACAGCCAGTCTTGACACAAAGCAA GCTGGAGGTGGAAGAAGATGAAGCCTTTACGCGGCGAGTGGCAGCACGAG TAGAAGGGAGAAACCGCCAGGAGCAGCAGCAGCGGCAGGTTTTGCTCACG CAGGAGAATCGAGTGCTAACAGTGCGGCTCAACAACGAGCTAGAAGACGT CCGAATGATGGAAGGCAAGATGCTGGAACTCTCGCAGCTATTAGGCCTCT TCACGGGCAAGCTTCTTGAGCAGCAGGATCAGGTCGAGGAGATACATGAG GCGGCGCGCGGAGCACACAACAATGTGGGCCAGGCAAACCACGAGCTCCT TTCGACGCTCGACCGCAACAGCAAGGCGAGTCAGACCATGCTCACATTCG TCTTTGTCCTTTGTATCGCCCTCCTCATCCTCGACCAGGCCATTCCATAG ATGACGGAGCAAGAGCGGGATCAGGTGGACCAGGTCATGGCTTCCTTCAT CATCAAGTGCGGCTCTCAAATCGAGATCATTCGCTGTGCACTTGCAGGTG AGGGTGGAATTGAGAGAGGTTGTAGAAAAACGTACGTATCATTTTATCAA ATTCAAATTATATCATACCACCCAGAGGCAAGCTCCCCAGAAGCGGGGGG CGGCAACGCGGCCACGGTTGGCGGCGATGGTTCCCGGTTGGCACATTACG GAGGGGTTGTATCTTATCTTGCCGAGCGACTACAAGACCTGGGGCACACG CTGCAAAGTCTGCAATCCCAACGCCGCAAGCTGAAAGCTATCGTGCCGTT TAGTGGTGGTTTTGGGGGCTCTTCCTCGTCAAGAACCACACCTTGTGCAA GAAGAAGAATGCACATGACGCCACCCCACAGTCCCTCTGCCAGCGGCAGT GGCAATTTAAGCCGTCAACGGAAAGCACAGCCAGTCTTGACACAAAGCAA GCTGGAGGTGGAAGAAGATGAAGCCTTTACGCGGCGAGTGGCAGCACGAG TAGAAGGGAGAAACCGCCAGGAGCAGCAGCAGCGGCAGGTTTTGCTCACG CAGGAGAATCGAGTGCTAACAGTGCGGCTCAACAACGAGCTAGAAGACGT CCGAATGATGGAAGGCAAGATGCTGGAACTCTCGCAGCTATTAGGCCTCT TCACGGGCAAGCTTCTTGAGCAGCAGGATCAGGTCGAGGAGATACATGAG GCGGCGCGCGGAGCACACAACAATGTGGGCCAGGCAAACCACGAGCTCCT TTCGACGCTCGACCGCAACAGCAAGGCGAGTCAGACCATGCTCACATTCG TCTTTGTCCTTTGTATCGCCCTCCTCATCCTCGACCAGGCCATTCCATAG ATGACGGAGCAAGAGCGGGATCAGGTGGACCAGGTCATGGCTTCCTTCAT CATCAAGTGCGGCTCTCAAATCGAGATCATTCGCTGTGCACTTGCAGGTG AGGGTGGAATTGAGAGAGGTTGTAGAAAAACGTACGTATCATTTTATCAA ATTCAAATTATATCATACCACCCAGAGGCAAGCTCCCCAGAAGCGGGGGG CGGCAACGCGGCCACGGTTGGCGGCGATGGTTCCCGGTTGGCACATTACG GAGGGGTTGTATCTTATCTTGCCGAGCGACTACAAGACCTGGGGCACACG CTGCAAAGTCTGCAATCCCAACGCCGCAAGCTGAAAGCTATCGTGCCGTT TAGTGGTGGTTTTGGGGGCTCTTCCTCGTCAAGAACCACACCTTGTGCAA GAAGAAGAATGCACATGACGCCACCCCACAGTCCCTCTGCCAGCGGCAGT GGCAATTTAAGCCGTCAACGGAAAGCACAGCCAGTCTTGACACAAAGCAA GCTGGAGGTGGAAGAAGATGAAGCCTTTACGCGGCGAGTGGCAGCACGAG TAGAAGGGAGAAACCGCCAGGAGCAGCAGCAGCGGCAGGTTTTGCTCACG CAGGAGAATCGAGTGCTAACAGTGCGGCTCAACAACGAGCTAGAAGACGT CCGAATGATGGAAGGCAAGATGCTGGAACTCTCGCAGCTATTAGGCCTCT TCACGGGCAAGCTTCTTGAGCAGCAGGATCAGGTCGAGGAGATACATGAG GCGGCGCGCGGAGCACACAACAATGTGGGCCAGGCAAACCACGAGCTCCT TTCGACGCTCGACCGCAACAGCAAGGCGAGTCAGACCATGCTCACATTCG TCTTTGTCCTTTGTATCGCCCTCCTCATCCTCGACCAGGCCATTCCATAG ATGACGGAGCAAGAGCGGGATCAGGTGGACCAGGTCATGGCTTCCTTCAT CATCAAGTGCGGCTCTCAAATCGAGATCATTCGCTGTGCACTTGCAGGTG AGGGTGGAATTGAGAGAGGTTGTAGAAAAACGTACGTATCATTTTATCAA ATTCAAATTATATCATACCACCCAGAGGCAAGCTCCCCAGAAGCGGGGGG CGGCAACGCGGCCACGGTTGGCGGCGATGGTTCCCGGTTGGCACATTACG GAGGGGTTGTATCTTATCTTGCCGAGCGACTACAAGACCTGGGGCACACG CTGCAAAGTCTGCAATCCCAACGCCGCAAGCTGAAAGCTATCGTGCCGTT TAGTGGTGGTTTTGGGGGCTCTTCCTCGTCAAGAACCACACCTTGTGCAA GAAGAAGAATGCACATGACGCCACCCCACAGTCCCTCTGCCAGCGGCAGT GGCAATTTAAGCCGTCAACGGAAAGCACAGCCAGTCTTGACACAAAGCAA GCTGGAGGTGGAAGAAGATGAAGCCTTTACGCGGCGAGTGGCAGCACGAG TAGAAGGGAGAAACCGCCAGGAGCAGCAGCAGCGGCAGGTTTTGCTCACG CAGGAGAATCGAGTGCTAACAGTGCGGCTCAACAACGAGCTAGAAGACGT CCGAATGATGGAAGGCAAGATGCTGGAACTCTCGCAGCTATTAGGCCTCT TCACGGGCAAGCTTCTTGAGCAGCAGGATCAGGTCGAGGAGATACATGAG GCGGCGCGCGGAGCACACAACAATGTGGGCCAGGCAAACCACGAGCTCCT TTCGACGCTCGACCGCAACAGCAAGGCGAGTCAGACCATGCTCACATTCG TCTTTGTCCTTTGTATCGCCCTCCTCATCCTCGACCAGGCCATTCCATAG ATGACGGAGCAAGAGCGGGATCAGGTGGACCAGGTCATGGCTTCCTTCAT CATCAAGTGCGGCTCTCAAATCGAGATCATTCGCTGTGCACTTGCAGGTG AGGGTGGAATTGAGAGAGGTTGTAGAAAAACGTACGTATCATTTTATCAA ATTCAAATTATATCATACCACCCAGAGGCAAGCTCCCCAGAAGCGGGGGG CGGCAACGCGGCCACGGTTGGCGGCGATGGTTCCCGGTTGGCACATTACG GAGGGGTTGTATCTTATCTTGCCGAGCGACTACAAGACCTGGGGCACACG CTGCAAAGTCTGCAATCCCAACGCCGCAAGCTGAAAGCTATCGTGCCGTT TAGTGGTGGTTTTGGGGGCTCTTCCTCGTCAAGAACCACACCTTGTGCAA GAAGAAGAATGCACATGACGCCACCCCACAGTCCCTCTGCCAGCGGCAGT GGCAATTTAAGCCGTCAACGGAAAGCACAGCCAGTCTTGACACAAAGCAA GCTGGAGGTGGAAGAAGATGAAGCCTTTACGCGGCGAGTGGCAGCACGAG TAGAAGGGAGAAACCGCCAGGAGCAGCAGCAGCGGCAGGTTTTGCTCACG CAGGAGAATCGAGTGCTAACAGTGCGGCTCAACAACGAGCTAGAAGACGT CCGAATGATGGAAGGCAAGATGCTGGAACTCTCGCAGCTATTAGGCCTCT TCACGGGCAAGCTTCTTGAGCAGCAGGATCAGGTCGAGGAGATACATGAG GCGGCGCGCGGAGCACACAACAATGTGGGCCAGGCAAACCACGAGCTCCT TTCGACGCTCGACCGCAACAGCAAGGCGAGTCAGACCATGCTCACATTCG TCTTTGTCCTTTGTATCGCCCTCCTCATCCTCGACCAGGCCATTCCATAG back to top
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