jgi.p|Nanoce1779_2|580742, mRNA_2551 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580742
Unique NamemRNA_2551
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1821
Alignment locationscaffold_5:638867..640849 -

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Properties
Property NameValue
TranscriptId580828
TrackFilteredModels2
ProteinId580742
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:638867..640849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580742gene_2551Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580742mRNA_2551-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2551CDS_2551Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2551 ID=mRNA_2551|Name=jgi.p|Nanoce1779_2|580742|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp
GTCTGTTGCCGGGCGGGCCGTTGCCGCCTCCGAGCCTCAACTCAAATTCT
TGAGCGATGATGTTGCACCAGTGTGGGAGGTTGTCCATCACCACTCAACC
TTATTCGTGCCCTTAAGGCGCCCACCCGTATACACAGGAGGGTAAAAAGG
TAAATAGAACCGCCAAGCCAAGTATGTGGGCTGGTCGTGGTCTTCAAGGC
ACCTTGAGACGGAAGTTGCTCTCGCCCTCGTCCTCGCCCCCAGTCCTCTT
CCTCCTCCCCCTCCTGCGATGCAGCCACACCATTCCGGGTCGGGCCACAC
GGAGGGGCTGTCATGGTTTTTATGACCGTTTGCAAAAAGATCAGGAGGAG
GAGGATCAGATGAAAGGCCAATCAAAAGGTGGGGGTGAGTCCAACCCCTC
CAGTCGAATGCTCACTGCAGTCCTTCCCAAAGCGGGCTGGGAAGTGGGGG
CCTTGTCGTTCGGACTTCCTAGAAGACCCCATGGCTTGGGAGATGCCCTC
GAGACAACACTTATGGCTGCTGTGGTTATAGCAAAGCAGAATCTCATCCA
AGTGTATGACGCGAGCAGTCATTCGAGCGAAGAGATTGGCTTGACATCCT
GTCGTGCCCTCCACACACTGATTCAGACCCGCAGGCTCATACACCGCGAA
GAATTGGTGACCTGTGCGACCATTAACTATGGTCATGACCTTGAGCCGGA
GTCCATTACAAGAGGATTAGACAGAGCGCGCTTTGTGACAGGGTTGGAAA
CTATAGATCTGGCCACGGTTACTGTAGATCTAGAGGACCACCGCACACCA
CGGGGCCAACCGTTACTAGAAAGCTTGCGGCGCATGATGGAATGCTTGGA
CAGATTGGCGGAGCAACCTTCATCTTCTCCCTCCTCCCCCTCCTCTTCTT
CTTCTTTCTCCTCCTCCTCGCTTCCTCCTCTTCAACATTATGCGATTGAG
CTTCGCCTACCGTTCTACATGCAGCATAAAAACCACCAAGAATTGACCGA
AGAGGAGGCTCCTGGATATAAAAATGCTGGCATGGCCTTGACAACAGCCC
AGCAAGAAGAGCTACTACTACCGAGAATCGTGGAGGAGGCGGCTCTGGTA
GGAAGAAGCAAATTGGCTATGGTCACGTACCCCATACAACTGACAGGAAA
GCATTTGGTGACTTTACCTCTCATGCAACCTGAAAGCAAGGCAGGGCGAC
AAGGTCAAATGCGTCCAGTGTCCCGCCTGGCCCGTGGCGCGCTGGTGGGA
TGTACTGATGCTGGCGAATCGCTTTCTTTGTCGTCCGAGTTACTCCCGCC
TGACACAGTGACTCGGCTCAACGCCGCGCTGAATGGAATGTCCCCGGCCC
TCCGCAGTAGCCCACTTCTCGAGGCAAAAGTAATACGAAGCGTGCTAGCT
GCCGAGATAGATATTGTGCAGCTCGATGTCGACGACATGCTTGGTCTTTT
GCCCAGATTTACTGAAACTGGAGGATTGTTAGTGCGGCGCAAGGATCGCC
TACAATTTCAGCAATGTAGGCGAGTTTTCGATGAGTTTTATCTCCCTGCT
TTATAAATATGGGAAGGAATATAACCTATTAACACTTTGAAACATAATAA
TTACTCGAGTTTTCGATGAGTTTTGTCTCCCTGCTTTATAAATATGGGAA
GGAATATAAACCTATTAACACTTTGAAGCATAATAATTACTCGTGCGTAC
GCGCGCTCGCTTTAAGTAGCAAGGACTGACCCGGCAAGGAGAGATGGATG
GATGCATCCTTTATCAATAGTAAAACTGTATTAAAAGAAGAGAGAGAGAG
AGTTTGTGTGTGAACTAAAAA
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protein sequence of jgi.p|Nanoce1779_2|580742

>mRNA_2551-protein ID=mRNA_2551-protein|Name=jgi.p|Nanoce1779_2|580742|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MWAGRGLQGTLRRKLLSPSSSPPVLFLLPLLRCSHTIPGRATRRGCHGFY
DRLQKDQEEEDQMKGQSKGGGESNPSSRMLTAVLPKAGWEVGALSFGLPR
RPHGLGDALETTLMAAVVIAKQNLIQVYDASSHSSEEIGLTSCRALHTLI
QTRRLIHREELVTCATINYGHDLEPESITRGLDRARFVTGLETIDLATVT
VDLEDHRTPRGQPLLESLRRMMECLDRLAEQPSSSPSSPSSSSSFSSSSL
PPLQHYAIELRLPFYMQHKNHQELTEEEAPGYKNAGMALTTAQQEELLLP
RIVEEAALVGRSKLAMVTYPIQLTGKHLVTLPLMQPESKAGRQGQMRPVS
RLARGALVGCTDAGESLSLSSELLPPDTVTRLNAALNGMSPALRSSPLLE
AKVIRSVLAAEIDIVQLDVDDMLGLLPRFTETGGLLVRRKDRLQFQQCRR
VFDEFYLPAL*
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mRNA from alignment at scaffold_5:638867..640849-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2551 ID=mRNA_2551|Name=jgi.p|Nanoce1779_2|580742|organism=Nannochloropsis oceanica|type=mRNA|length=1983bp|location=Sequence derived from alignment at scaffold_5:638867..640849- (Nannochloropsis oceanica)
GTCTGTTGCCGGGCGGGCCGTTGCCGCCTCCGAGCCTCAACTCAAATTCT
TGAGCGATGATGTTGCACCAGTGTGGGAGGTTGTCCATCACCACTCAACC
TTATTCGTGCCCTTAAGGCGCCCACCCGTATACACAGGAGGGTAAAAAGG
TAAATAGAACCGCCAAGCCAAGTATGTGGGCTGGTCGTGGTCTTCAAGGC
ACCTTGAGACGGAAGTTGCTCTCGCCCTCGTCCTCGCCCCCAGTCCTCTT
CCTCCTCCCCCTCCTGCGATGCAGCCACACCATTCCGGGTCGGGCCACAC
GGAGGGGCTGTCATGGTTTTTATGACCGTTTGCAAAAAGATCAGGAGGAG
GAGGATCAGATGAAAGGCCAATCAAAAGGTGGGGGTGAGTCCAACCCCTC
CAGTCGAATGCTCACTGCAGTCCTTCCCAAAGCGGGCTGGGAAGTGGGGG
CCTTGTCGTTCGGACTTCCTAGAAGACCCCATGGCTTGGGAGATGCCCTC
GAGACAACACTTATGGCTGCTGTGGTTATAGCAAAGCAGAATCTCATCCA
AGTGTATGACGCGAGCAGTCATTCGAGCGAAGAGATTGGCTTGACATCCT
GTCGTGCCCTCCACACACTGATTCAGACCCGCAGGTACGCAATACGGGCG
CAAAAGGCAGATTTCTAAGTCTGCATGAGTCTCTTTGACTTTTCAAGTGA
CCTATTCTGCCTTTTCTCGCCATCAATCCTCGATACCTCTTCTAAACATC
TCTTTTATATGGATCCATCTATTTTCGTGCTTATGAATTCACTCAGGCTC
ATACACCGCGAAGAATTGGTGACCTGTGCGACCATTAACTATGGTCATGA
CCTTGAGCCGGAGTCCATTACAAGAGGATTAGACAGAGCGCGCTTTGTGA
CAGGGTTGGAAACTATAGATCTGGCCACGGTTACTGTAGATCTAGAGGAC
CACCGCACACCACGGGGCCAACCGTTACTAGAAAGCTTGCGGCGCATGAT
GGAATGCTTGGACAGATTGGCGGAGCAACCTTCATCTTCTCCCTCCTCCC
CCTCCTCTTCTTCTTCTTTCTCCTCCTCCTCGCTTCCTCCTCTTCAACAT
TATGCGATTGAGCTTCGCCTACCGTTCTACATGCAGCATAAAAACCACCA
AGAATTGACCGAAGAGGAGGCTCCTGGATATAAAAATGCTGGCATGGCCT
TGACAACAGCCCAGCAAGAAGAGCTACTACTACCGAGAATCGTGGAGGAG
GCGGCTCTGGTAGGAAGAAGCAAATTGGCTATGGTCACGTACCCCATACA
ACTGACAGGAAAGCATTTGGTGACTTTACCTCTCATGCAACCTGAAAGCA
AGGCAGGGCGACAAGGTCAAATGCGTCCAGTGTCCCGCCTGGCCCGTGGC
GCGCTGGTGGGATGTACTGATGCTGGCGAATCGCTTTCTTTGTCGTCCGA
GTTACTCCCGCCTGACACAGTGACTCGGCTCAACGCCGCGCTGAATGGAA
TGTCCCCGGCCCTCCGCAGTAGCCCACTTCTCGAGGCAAAAGTAATACGA
AGCGTGCTAGCTGCCGAGATAGATATTGTGCAGCTCGATGTCGACGACAT
GCTTGGTCTTTTGCCCAGATTTACTGAAACTGGAGGATTGTTAGTGCGGC
GCAAGGATCGCCTACAATTTCAGCAATGTAGGCGAGTTTTCGATGAGTTT
TATCTCCCTGCTTTATAAATATGGGAAGGAATATAACCTATTAACACTTT
GAAACATAATAATTACTCGAGTTTTCGATGAGTTTTGTCTCCCTGCTTTA
TAAATATGGGAAGGAATATAAACCTATTAACACTTTGAAGCATAATAATT
ACTCGTGCGTACGCGCGCTCGCTTTAAGTAGCAAGGACTGACCCGGCAAG
GAGAGATGGATGGATGCATCCTTTATCAATAGTAAAACTGTATTAAAAGA
AGAGAGAGAGAGAGTTTGTGTGTGAACTAAAAA
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Coding sequence (CDS) from alignment at scaffold_5:638867..640849-

>mRNA_2551 ID=mRNA_2551|Name=jgi.p|Nanoce1779_2|580742|organism=Nannochloropsis oceanica|type=CDS|length=2766bp|location=Sequence derived from alignment at scaffold_5:638867..640849- (Nannochloropsis oceanica)
GCTCATACACCGCGAAGAATTGGTGACCTGTGCGACCATTAACTATGGTC
ATGACCTTGAGCCGGAGTCCATTACAAGAGGATTAGACAGAGCGCGCTTT
GTGACAGGGTTGGAAACTATAGATCTGGCCACGGTTACTGTAGATCTAGA
GGACCACCGCACACCACGGGGCCAACCGTTACTAGAAAGCTTGCGGCGCA
TGATGGAATGCTTGGACAGATTGGCGGAGCAACCTTCATCTTCTCCCTCC
TCCCCCTCCTCTTCTTCTTCTTTCTCCTCCTCCTCGCTTCCTCCTCTTCA
ACATTATGCGATTGAGCTTCGCCTACCGTTCTACATGCAGCATAAAAACC
ACCAAGAATTGACCGAAGAGGAGGCTCCTGGATATAAAAATGCTGGCATG
GCCTTGACAACAGCCCAGCAAGAAGAGCTACTACTACCGAGAATCGTGGA
GGAGGCGGCTCTGGTAGGAAGAAGCAAATTGGCTATGGTCACGTACCCCA
TACAACTGACAGGAAAGCATTTGGTGACTTTACCTCTCATGCAACCTGAA
AGCAAGGCAGGGCGACAAGGTCAAATGCGTCCAGTGTCCCGCCTGGCCCG
TGGCGCGCTGGTGGGATGTACTGATGCTGGCGAATCGCTTTCTTTGTCGT
CCGAGTTACTCCCGCCTGACACAGTGACTCGGCTCAACGCCGCGCTGAAT
GGAATGTCCCCGGCCCTCCGCAGTAGCCCACTTCTCGAGGCAAAAGTAAT
ACGAAGCGTGCTAGCTGCCGAGATAGATATTGTGCAGCTCGATGTCGACG
ACATGCTTGGTCTTTTGCCCAGATTTACTGAAACTGGAGGATTGTTAGTG
CGGCGCAAGGATCGCCTACAATTTCAGCAATGTAGGCGAGTTTTCGATGA
GTTTTATCTCCCTGCTTTATAAATGTGGGCTGGTCGTGGTCTTCAAGGCA
CCTTGAGACGGAAGTTGCTCTCGCCCTCGTCCTCGCCCCCAGTCCTCTTC
CTCCTCCCCCTCCTGCGATGCAGCCACACCATTCCGGGTCGGGCCACACG
GAGGGGCTGTCATGGTTTTTATGACCGTTTGCAAAAAGATCAGGAGGAGG
AGGATCAGATGAAAGGCCAATCAAAAGGTGGGGGTGAGTCCAACCCCTCC
AGTCGAATGCTCACTGCAGTCCTTCCCAAAGCGGGCTGGGAAGTGGGGGC
CTTGTCGTTCGGACTTCCTAGAAGACCCCATGGCTTGGGAGATGCCCTCG
AGACAACACTTATGGCTGCTGTGGTTATAGCAAAGCAGAATCTCATCCAA
GTGTATGACGCGAGCAGTCATTCGAGCGAAGAGATTGGCTTGACATCCTG
TCGTGCCCTCCACACACTGATTCAGACCCGCAGGCTCATACACCGCGAAG
AATTGGTGACCTGTGCGACCATTAACTATGGTCATGACCTTGAGCCGGAG
TCCATTACAAGAGGATTAGACAGAGCGCGCTTTGTGACAGGGTTGGAAAC
TATAGATCTGGCCACGGTTACTGTAGATCTAGAGGACCACCGCACACCAC
GGGGCCAACCGTTACTAGAAAGCTTGCGGCGCATGATGGAATGCTTGGAC
AGATTGGCGGAGCAACCTTCATCTTCTCCCTCCTCCCCCTCCTCTTCTTC
TTCTTTCTCCTCCTCCTCGCTTCCTCCTCTTCAACATTATGCGATTGAGC
TTCGCCTACCGTTCTACATGCAGCATAAAAACCACCAAGAATTGACCGAA
GAGGAGGCTCCTGGATATAAAAATGCTGGCATGGCCTTGACAACAGCCCA
GCAAGAAGAGCTACTACTACCGAGAATCGTGGAGGAGGCGGCTCTGGTAG
GAAGAAGCAAATTGGCTATGGTCACGTACCCCATACAACTGACAGGAAAG
CATTTGGTGACTTTACCTCTCATGCAACCTGAAAGCAAGGCAGGGCGACA
AGGTCAAATGCGTCCAGTGTCCCGCCTGGCCCGTGGCGCGCTGGTGGGAT
GTACTGATGCTGGCGAATCGCTTTCTTTGTCGTCCGAGTTACTCCCGCCT
GACACAGTGACTCGGCTCAACGCCGCGCTGAATGGAATGTCCCCGGCCCT
CCGCAGTAGCCCACTTCTCGAGGCAAAAGTAATACGAAGCGTGCTAGCTG
CCGAGATAGATATTGTGCAGCTCGATGTCGACGACATGCTTGGTCTTTTG
CCCAGATTTACTGAAACTGGAGGATTGTTAGTGCGGCGCAAGGATCGCCT
ACAATTTCAGCAATGTAGGCGAGTTTTCGATGAGTTTTATCTCCCTGCTT
TATAAATGTGGGCTGGTCGTGGTCTTCAAGGCACCTTGAGACGGAAGTTG
CTCTCGCCCTCGTCCTCGCCCCCAGTCCTCTTCCTCCTCCCCCTCCTGCG
ATGCAGCCACACCATTCCGGGTCGGGCCACACGGAGGGGCTGTCATGGTT
TTTATGACCGTTTGCAAAAAGATCAGGAGGAGGAGGATCAGATGAAAGGC
CAATCAAAAGGTGGGGGTGAGTCCAACCCCTCCAGTCGAATGCTCACTGC
AGTCCTTCCCAAAGCGGGCTGGGAAGTGGGGGCCTTGTCGTTCGGACTTC
CTAGAAGACCCCATGGCTTGGGAGATGCCCTCGAGACAACACTTATGGCT
GCTGTGGTTATAGCAAAGCAGAATCTCATCCAAGTGTATGACGCGAGCAG
TCATTCGAGCGAAGAGATTGGCTTGACATCCTGTCGTGCCCTCCACACAC
TGATTCAGACCCGCAG
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Synonyms
Publications