jgi.p|Nanoce1779_2|580739, mRNA_2550 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580739
Unique Name	mRNA_2550
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1760
Alignment location	scaffold_5:637089..638848 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580825
Track	FilteredModels2
ProteinId	580739

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:637089..638848 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580739	gene_2550	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580739	mRNA_2550-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2550	CDS_2550	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:637089..638848+
coding sequence from alignment at scaffold_5:637089..638848+

mRNA sequence

>mRNA_2550 ID=mRNA_2550|Name=jgi.p|Nanoce1779_2|580739|organism=Nannochloropsis oceanica|type=mRNA|length=1760bp
ACAGACTCAACTGCCCACTTGTGGTCACTTGTGGTCACCCCAGCAAAAAG
AGGACCCTCCCTTCTGTTTCCGCCTGCTACACGCTGGACAACACAACAAA
CATGAGTGACCACACGCCGTGCACGCCGGGCCCTGAGAACGAGACGCAGC
AGCATGAGCACCCGGAAGCCGAATTTGACCTGGAGGAATTGGCCCCCACC
ATGCGCTCCGTAGAGATATTGCGCGGCCCCGCCTCGGTGCCCAGCCTGCC
CACTCACTATGACCGTCATCAGGGTGCCTACTTGTATCGCGTAGGGGCGG
GACCCAGCGGTAGCTCTGGTGGTGGTAATTGTGGGTCATCTTTGTCTCAC
TTAGTCGTCCCCACGCACCCCAAGACGCAGCAAAATTATGCGGCCCCGAC
GCTAAGGCCCGCGTCTTCAATATCATCGTCGGCGGCGACATCCATGACCG
AGAAAGTCGAGTCGTTGGCCGCACCTAAGATGCCATTTGAGATGGCGCTC
TTTCCCCTGGAGAGGTGCCACTACTACACCAACAAGTCGGCCGAAGATTT
GCACACCGACATTGAGGCAGCGCTTCAAGAGAAGGGCGTGGTTTTCAATT
TTGTGCCTGCAAAGTTCAAATTTGCCTGTGAGTATCGCACGGGCGTGAAC
ATGGTGCGGTTTGTCTGTCGGGCATATTTTGTGCCCGAGGACGGTCGGAC
AGTAGTGGAATTTCAACGCCGCGCGGGTTGCTGTATCGTCTGCGCGAAGG
TGGTGGACGCGGTGCGCTCGACGCTGCTGGCACGGGAATGCAACGCTGAG
GCAGCACCCATAGCCATTCGGGCCTTCCAGCCCAAGCCTTTGTATATAAC
TGCATGCCTGCTCCACGAGAAAAGCCAGGCGGAGGCGCCGTCGCGTCAAT
TAGCGCAGCAATGCACTTTGATGGACGATTTACGAAGGTGTATGGCGGAA
GGCAAGGACGCAGTCTTGACGGACTTTGCCGTGGTTCTAGTCCCACTTTC
GCAGCTCGCCCCGCAGCGATTACTGGGGGATCCAAGCAATGCTGAGCTTT
TGGCTGCACTAGGACAGCACGTGAATGTGCCAAACGCGCGCCTCAGCGCC
TTGGTCTGTTTGGCAAACTTGGCGGCGATCTGCTTCCCTGTAAGTGTGGA
GAGTATATTCAGCTTGCCATCCCTGCGAAGGTGCGCCAGCAGTGACCCGG
ATAACGACGTGACAGATGATGCGGCCGCGAACGAGCCCGGCCCAAGCGTG
GGCGAGGTATGTGCCTGGTTCGATGGCGTGCTCCTGACACTTGTGAGAAC
GTTGGACGCAGAGTCAGAGGAGGATGGGAATCCGCATTTTCGCCGGGAGG
CGGCTCGCGCGCTTCTCCACTTAACGAAGGAGTCATTTGCGCGCACGATG
GCTGTGCGGGGGGCTTTGGAAAAGTGTGCTGCTGCTGGACCGGTGGGGAA
GGACCGCCTTTTGGATAGCTATGTCCAAGGAGCCCTGCGGCACATGGGGG
CGTGAAGGAGCCCGAGGAAAGAGGAACGCACGTAGGCTCACTCAACCAAG
GTCTCCAATTTTTGTCAGCGTGCTTGTAATATCCGTAAGTGTAAATAGTA
CTAAACTGCATGCTTCGCACGTGCTCGCAGCTGCTCAGTCTGCGAGAACG
GATGGGAAGCGAAGGAATAGAGAGGGGAGATGATCAAGAGCCGCAGATTC
GAGTGCACCAGAGCTATTGCAGAAAAAGCTTCTGGAAGAAAAAAAACGAA
ACAGGATGCA

protein sequence of jgi.p|Nanoce1779_2|580739

>mRNA_2550-protein ID=mRNA_2550-protein|Name=jgi.p|Nanoce1779_2|580739|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MSDHTPCTPGPENETQQHEHPEAEFDLEELAPTMRSVEILRGPASVPSLP
THYDRHQGAYLYRVGAGPSGSSGGGNCGSSLSHLVVPTHPKTQQNYAAPT
LRPASSISSSAATSMTEKVESLAAPKMPFEMALFPLERCHYYTNKSAEDL
HTDIEAALQEKGVVFNFVPAKFKFACEYRTGVNMVRFVCRAYFVPEDGRT
VVEFQRRAGCCIVCAKVVDAVRSTLLARECNAEAAPIAIRAFQPKPLYIT
ACLLHEKSQAEAPSRQLAQQCTLMDDLRRCMAEGKDAVLTDFAVVLVPLS
QLAPQRLLGDPSNAELLAALGQHVNVPNARLSALVCLANLAAICFPVSVE
SIFSLPSLRRCASSDPDNDVTDDAAANEPGPSVGEVCAWFDGVLLTLVRT
LDAESEEDGNPHFRREAARALLHLTKESFARTMAVRGALEKCAAAGPVGK
DRLLDSYVQGALRHMGA*

mRNA from alignment at scaffold_5:637089..638848+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2550 ID=mRNA_2550|Name=jgi.p|Nanoce1779_2|580739|organism=Nannochloropsis oceanica|type=mRNA|length=1760bp|location=Sequence derived from alignment at scaffold_5:637089..638848+ (Nannochloropsis oceanica)
ACAGACTCAACTGCCCACTTGTGGTCACTTGTGGTCACCCCAGCAAAAAG
AGGACCCTCCCTTCTGTTTCCGCCTGCTACACGCTGGACAACACAACAAA
CATGAGTGACCACACGCCGTGCACGCCGGGCCCTGAGAACGAGACGCAGC
AGCATGAGCACCCGGAAGCCGAATTTGACCTGGAGGAATTGGCCCCCACC
ATGCGCTCCGTAGAGATATTGCGCGGCCCCGCCTCGGTGCCCAGCCTGCC
CACTCACTATGACCGTCATCAGGGTGCCTACTTGTATCGCGTAGGGGCGG
GACCCAGCGGTAGCTCTGGTGGTGGTAATTGTGGGTCATCTTTGTCTCAC
TTAGTCGTCCCCACGCACCCCAAGACGCAGCAAAATTATGCGGCCCCGAC
GCTAAGGCCCGCGTCTTCAATATCATCGTCGGCGGCGACATCCATGACCG
AGAAAGTCGAGTCGTTGGCCGCACCTAAGATGCCATTTGAGATGGCGCTC
TTTCCCCTGGAGAGGTGCCACTACTACACCAACAAGTCGGCCGAAGATTT
GCACACCGACATTGAGGCAGCGCTTCAAGAGAAGGGCGTGGTTTTCAATT
TTGTGCCTGCAAAGTTCAAATTTGCCTGTGAGTATCGCACGGGCGTGAAC
ATGGTGCGGTTTGTCTGTCGGGCATATTTTGTGCCCGAGGACGGTCGGAC
AGTAGTGGAATTTCAACGCCGCGCGGGTTGCTGTATCGTCTGCGCGAAGG
TGGTGGACGCGGTGCGCTCGACGCTGCTGGCACGGGAATGCAACGCTGAG
GCAGCACCCATAGCCATTCGGGCCTTCCAGCCCAAGCCTTTGTATATAAC
TGCATGCCTGCTCCACGAGAAAAGCCAGGCGGAGGCGCCGTCGCGTCAAT
TAGCGCAGCAATGCACTTTGATGGACGATTTACGAAGGTGTATGGCGGAA
GGCAAGGACGCAGTCTTGACGGACTTTGCCGTGGTTCTAGTCCCACTTTC
GCAGCTCGCCCCGCAGCGATTACTGGGGGATCCAAGCAATGCTGAGCTTT
TGGCTGCACTAGGACAGCACGTGAATGTGCCAAACGCGCGCCTCAGCGCC
TTGGTCTGTTTGGCAAACTTGGCGGCGATCTGCTTCCCTGTAAGTGTGGA
GAGTATATTCAGCTTGCCATCCCTGCGAAGGTGCGCCAGCAGTGACCCGG
ATAACGACGTGACAGATGATGCGGCCGCGAACGAGCCCGGCCCAAGCGTG
GGCGAGGTATGTGCCTGGTTCGATGGCGTGCTCCTGACACTTGTGAGAAC
GTTGGACGCAGAGTCAGAGGAGGATGGGAATCCGCATTTTCGCCGGGAGG
CGGCTCGCGCGCTTCTCCACTTAACGAAGGAGTCATTTGCGCGCACGATG
GCTGTGCGGGGGGCTTTGGAAAAGTGTGCTGCTGCTGGACCGGTGGGGAA
GGACCGCCTTTTGGATAGCTATGTCCAAGGAGCCCTGCGGCACATGGGGG
CGTGAAGGAGCCCGAGGAAAGAGGAACGCACGTAGGCTCACTCAACCAAG
GTCTCCAATTTTTGTCAGCGTGCTTGTAATATCCGTAAGTGTAAATAGTA
CTAAACTGCATGCTTCGCACGTGCTCGCAGCTGCTCAGTCTGCGAGAACG
GATGGGAAGCGAAGGAATAGAGAGGGGAGATGATCAAGAGCCGCAGATTC
GAGTGCACCAGAGCTATTGCAGAAAAAGCTTCTGGAAGAAAAAAAACGAA
ACAGGATGCA

Coding sequence (CDS) from alignment at scaffold_5:637089..638848+

>mRNA_2550 ID=mRNA_2550|Name=jgi.p|Nanoce1779_2|580739|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_5:637089..638848+ (Nannochloropsis oceanica)
ATGAGTGACCACACGCCGTGCACGCCGGGCCCTGAGAACGAGACGCAGCA
GCATGAGCACCCGGAAGCCGAATTTGACCTGGAGGAATTGGCCCCCACCA
TGCGCTCCGTAGAGATATTGCGCGGCCCCGCCTCGGTGCCCAGCCTGCCC
ACTCACTATGACCGTCATCAGGGTGCCTACTTGTATCGCGTAGGGGCGGG
ACCCAGCGGTAGCTCTGGTGGTGGTAATTGTGGGTCATCTTTGTCTCACT
TAGTCGTCCCCACGCACCCCAAGACGCAGCAAAATTATGCGGCCCCGACG
CTAAGGCCCGCGTCTTCAATATCATCGTCGGCGGCGACATCCATGACCGA
GAAAGTCGAGTCGTTGGCCGCACCTAAGATGCCATTTGAGATGGCGCTCT
TTCCCCTGGAGAGGTGCCACTACTACACCAACAAGTCGGCCGAAGATTTG
CACACCGACATTGAGGCAGCGCTTCAAGAGAAGGGCGTGGTTTTCAATTT
TGTGCCTGCAAAGTTCAAATTTGCCTGTGAGTATCGCACGGGCGTGAACA
TGGTGCGGTTTGTCTGTCGGGCATATTTTGTGCCCGAGGACGGTCGGACA
GTAGTGGAATTTCAACGCCGCGCGGGTTGCTGTATCGTCTGCGCGAAGGT
GGTGGACGCGGTGCGCTCGACGCTGCTGGCACGGGAATGCAACGCTGAGG
CAGCACCCATAGCCATTCGGGCCTTCCAGCCCAAGCCTTTGTATATAACT
GCATGCCTGCTCCACGAGAAAAGCCAGGCGGAGGCGCCGTCGCGTCAATT
AGCGCAGCAATGCACTTTGATGGACGATTTACGAAGGTGTATGGCGGAAG
GCAAGGACGCAGTCTTGACGGACTTTGCCGTGGTTCTAGTCCCACTTTCG
CAGCTCGCCCCGCAGCGATTACTGGGGGATCCAAGCAATGCTGAGCTTTT
GGCTGCACTAGGACAGCACGTGAATGTGCCAAACGCGCGCCTCAGCGCCT
TGGTCTGTTTGGCAAACTTGGCGGCGATCTGCTTCCCTGTAAGTGTGGAG
AGTATATTCAGCTTGCCATCCCTGCGAAGGTGCGCCAGCAGTGACCCGGA
TAACGACGTGACAGATGATGCGGCCGCGAACGAGCCCGGCCCAAGCGTGG
GCGAGGTATGTGCCTGGTTCGATGGCGTGCTCCTGACACTTGTGAGAACG
TTGGACGCAGAGTCAGAGGAGGATGGGAATCCGCATTTTCGCCGGGAGGC
GGCTCGCGCGCTTCTCCACTTAACGAAGGAGTCATTTGCGCGCACGATGG
CTGTGCGGGGGGCTTTGGAAAAGTGTGCTGCTGCTGGACCGGTGGGGAAG
GACCGCCTTTTGGATAGCTATGTCCAAGGAGCCCTGCGGCACATGGGGGC
GTGA

Synonyms

Publications