jgi.p|Nanoce1779_2|576716, mRNA_255 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576716
Unique Name	mRNA_255
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1373
Alignment location	scaffold_3:635361..636980 +

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Properties


Property Name	Value
TranscriptId	576802
Track	FilteredModels2
ProteinId	576716

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:635361..636980 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576716	gene_255	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576716	mRNA_255-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_255	CDS_255	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:635361..636980+
coding sequence from alignment at scaffold_3:635361..636980+

mRNA sequence

>mRNA_255 ID=mRNA_255|Name=jgi.p|Nanoce1779_2|576716|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp
CAGGACAGTCCAAGAATGCTCACGCAAATTGGGGAGGGCAAAAAAGCCAA
AAAAGTCCTGGTCATCGTAACAGGCGGGACGCTAATCATGAAGCCCAGCG
GCACAGGAGGTACATTGGATGTTTGCCCGGGATTTCTCTCGGAGCTCTTG
GCTTTGCCGGAATGGCGGCATGAGAATCTACCCGATATAGACGTTTTGGA
ATGGGATCACCTCACCGATAGTGCCTGTATGGGGCCGGAGCATTGGATCA
AGATTGCGGAGGAAATTGAGAGTGCCTATTTTCGGTACGAAGGCTTCGTA
GTCGTGCACGGTACAGACACACTTGCCTACTCGGCGAGTGCATTGGCCTT
CATGTTTGAGAACCTTGGAAAGCCAGTCGTGTTCACCGGGAGTCAAATTC
CGCTGGCTGAGGTGTACTCAGACGCGCGAAACAATCTTGTGAGCTCGCTG
CTCTTTGCATGCCGACAAGATTTTCAGGAAGTGTGCATTGTTTTCGGTTC
CCGGCTGTTACGGGGCTGTCGGACCACCAAGGTTCACTCTTTTGACTTGC
AAGCCTTTGCCTCGCCCAACTTTCCCCCCTTGGCCACCCTCGGCGTCAAC
TTGGAGTTTGCATCAAATATTTCGCTTCCACCACCGCGCAAGCCATTGCG
GGTACACAAAGATATGGATGCCAATTTGGTCGTTGTGCGGCTCGTGCCGG
GCTTTGAGGACGACGCGTTATTTGCCATGATCAACCACAGCCGGCACTTG
CATGGGATTATTCTGCTTTTATACGGTACGGGCAACGGCGACACATCCAG
TCGCTCGGGTTTGCTGGAGGCTGTTACGCTTGCCGCGCAAAAGGGTATAC
TTGTGGTCGTCCTAACTCAATGCTTCCAAGGTGGAGTCTTGCTTGACAAG
TACAGTGTGGGGGTGGCTTTGTGCGCCGCTGGGGTTGTCAGTGGCCATGA
CATGACAGTCGAGGCCTGCGTCACGAAGATTTCTTATCTCTTTTCTCGGA
CGGGCGGGGACATCGATAAGGTGAAGAGCCTGCTTAGTGTCGACTTGCGC
GGTGAGCTTTCGAATGATTCCCGTTATCGCAGTGCCATCAAGGATGTGGT
ACCGCTGGCCAAGCTGTAAAGCAAAAAGTAATATCATGACATACATGCTT
TTCGTGGCGTTGTCGTTATCTCATGTCCATGCCGTTCAGCCCCCAAAAAA
CATAGTGTCTGGGGACGGAGGAAAGTCAATGGGTGCAAATCGAGGGATTC
TCAGACACGAAAAATCTTGGGATATTTTTGTACATCAGGGTAATTGAGAT
GAGAGTTTATGTCTGTGTACATTATTATTCCTCTGTATGATGAAAGTAAA
CAAGCAGAGTACGCGTGCACATC

protein sequence of jgi.p|Nanoce1779_2|576716

>mRNA_255-protein ID=mRNA_255-protein|Name=jgi.p|Nanoce1779_2|576716|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MLTQIGEGKKAKKVLVIVTGGTLIMKPSGTGGTLDVCPGFLSELLALPEW
RHENLPDIDVLEWDHLTDSACMGPEHWIKIAEEIESAYFRYEGFVVVHGT
DTLAYSASALAFMFENLGKPVVFTGSQIPLAEVYSDARNNLVSSLLFACR
QDFQEVCIVFGSRLLRGCRTTKVHSFDLQAFASPNFPPLATLGVNLEFAS
NISLPPPRKPLRVHKDMDANLVVVRLVPGFEDDALFAMINHSRHLHGIIL
LLYGTGNGDTSSRSGLLEAVTLAAQKGILVVVLTQCFQGGVLLDKYSVGV
ALCAAGVVSGHDMTVEACVTKISYLFSRTGGDIDKVKSLLSVDLRGELSN
DSRYRSAIKDVVPLAKL*

mRNA from alignment at scaffold_3:635361..636980+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_255 ID=mRNA_255|Name=jgi.p|Nanoce1779_2|576716|organism=Nannochloropsis oceanica|type=mRNA|length=1620bp|location=Sequence derived from alignment at scaffold_3:635361..636980+ (Nannochloropsis oceanica)
CAGGACAGTCCAAGAATGCTCACGCAAATTGGGGAGGGCAAAAAAGCCAA
AAAAGTCCTGGTCATCGTAACAGGCGGGACGCTAATCATGAAGCCCAGCG
GCACAGGAGGTACATTGGATGTTTGCCCGGGATTTCTCTCGGAGCTCTTG
GCTTTGCCGGAATGGCGGCATGAGAATCTACCCGATATAGACGTTTTGGA
ATGGGATCACCTCACCGATAGTGCCTGTATGGGGCCGGAGCATTGGATCA
AGATTGCGGAGGAAATTGAGAGTGCCTATTTTCGGTACGAAGGCTTCGTA
GTCGTGCACGGTACAGACACACTTGCCTACTCGGCGAGTGCATTGGCCTT
CATGTTTGAGAACCTTGGAAAGCCAGTCGTGTTCACCGGGAGTCAAATTC
CGCTGGCTGAGGTGTACTCAGACGCGCGAAACAATCTTGTGAGCTCGCTG
CTCTTTGCATGCCGACAAGATTTTCAGGAAGTGTGCATTGTTTTCGGTTC
CCGGCTGTTACGGGGCTGTCGGACCACCAAGGTTCACTCTTTTGACTTGC
AAGCCTTTGCCTCGCCCAACTTTCCCCCCTTGGCCACCCTCGGCGTCAAC
TTGGAGTTTGCATCAAATATTTCGCTTCCACCACCGCGCAAGCCATTGCG
GGTACACAAAGATATGGATGCCAATTTGGTCGTTGTGCGGCTCGTGCCGG
GCTTTGAGGACGACGCGTTATTTGCCATGATCAACCACAGCCGGCACTTG
CATGGGATTATTCTGCTTTTATACGGTACGCAGGAAAGAAAGTTTTAAGC
CATATGACGTTTGAATTGGAGGACGAGCCGTCATAAGTATAGTAATTTGT
TTTTTCCACCTCCTGTTCGCTCGAGCTCCTTGCGCCGTCCGTCTCACCCT
CCTCCGATTCGTTGCCCTAGGTACGGGCAACGGCGACACATCCAGTCGCT
CGGGTTTGCTGGAGGCTGTTACGCTTGCCGCGCAAAAGGGTATACTTGTG
GTCGTCCTAACTCAATGCTTCCAAGGTGGAGTCTTGCTTGACAAGTACAG
TGTGGGGGTGGCTTTGTGCGCCGCTGGGGTTGTCAGTGGTACGTTGGGAT
TGAGGGGAAGGAGGAAGGGACTTAAGCTATATGCTTCTCTAATTGTCTTC
TACCGTACTCAGTAGTTCCTCCCTTCCCTTCCTCCATCAGGCCATGACAT
GACAGTCGAGGCCTGCGTCACGAAGATTTCTTATCTCTTTTCTCGGACGG
GCGGGGACATCGATAAGGTGAAGAGCCTGCTTAGTGTCGACTTGCGCGGT
GAGCTTTCGAATGATTCCCGTTATCGCAGTGCCATCAAGGATGTGGTACC
GCTGGCCAAGCTGTAAAGCAAAAAGTAATATCATGACATACATGCTTTTC
GTGGCGTTGTCGTTATCTCATGTCCATGCCGTTCAGCCCCCAAAAAACAT
AGTGTCTGGGGACGGAGGAAAGTCAATGGGTGCAAATCGAGGGATTCTCA
GACACGAAAAATCTTGGGATATTTTTGTACATCAGGGTAATTGAGATGAG
AGTTTATGTCTGTGTACATTATTATTCCTCTGTATGATGAAAGTAAACAA
GCAGAGTACGCGTGCACATC

Coding sequence (CDS) from alignment at scaffold_3:635361..636980+

>mRNA_255 ID=mRNA_255|Name=jgi.p|Nanoce1779_2|576716|organism=Nannochloropsis oceanica|type=CDS|length=3312bp|location=Sequence derived from alignment at scaffold_3:635361..636980+ (Nannochloropsis oceanica)
ATGCTCACGCAAATTGGGGAGGGCAAAAAAGCCAAAAAAGTCCTGGTCAT
CGTAACAGGCGGGACGCTAATCATGAAGCCCAGCGGCACAGGAGGTACAT
TGGATGTTTGCCCGGGATTTCTCTCGGAGCTCTTGGCTTTGCCGGAATGG
CGGCATGAGAATCTACCCGATATAGACGTTTTGGAATGGGATCACCTCAC
CGATAGTGCCTGTATGGGGCCGGAGCATTGGATCAAGATTGCGGAGGAAA
TTGAGAGTGCCTATTTTCGGTACGAAGGCTTCGTAGTCGTGCACGGTACA
GACACACTTGCCTACTCGGCGAGTGCATTGGCCTTCATGTTTGAGAACCT
TGGAAAGCCAGTCGTGTTCACCGGGAGTCAAATTCCGCTGGCTGAGGTGT
ACTCAGACGCGCGAAACAATCTTGTGAGCTCGCTGCTCTTTGCATGCCGA
CAAGATTTTCAGGAAGTGTGCATTGTTTTCGGTTCCCGGCTGTTACGGGG
CTGTCGGACCACCAAGGTTCACTCTTTTGACTTGCAAGCCTTTGCCTCGC
CCAACTTTCCCCCCTTGGCCACCCTCGGCGTCAACTTGGAGTTTGCATCA
AATATTTCGCTTCCACCACCGCGCAAGCCATTGCGGGTACACAAAGATAT
GGATGCCAATTTGGTCGTTGTGCGGCTCGTGCCGGGCTTTGAGGACGACG
CGTTATTTGCCATGATCAACCACAGCCGGCACTTGCATGGGATTATTCTG
CTTTTATACGGTACGGGCAACGGCGACACATCCAGTCGCTCGGGTTTGCT
GGAGGCTGTTACGCTTGCCGCGCAAAAGGGTATACTTGTGGTCGTCCTAA
CTCAATGCTTCCAAGGTGGAGTCTTGCTTGACAAGTACAGTGTGGGGGTG
GCTTTGTGCGCCGCTGGGGTTGTCAGTGGCCATGACATGACAGTCGAGGC
CTGCGTCACGAAGATTTCTTATCTCTTTTCTCGGACGGGCGGGGACATCG
ATAAGGTGAAGAGCCTGCTTAGTGTCGACTTGCGCGGTGAGCTTTCGAAT
GATTCCCGTTATCGCAGTGCCATCAAGGATGTGGTACCGCTGGCCAAGCT
GTAAATGCTCACGCAAATTGGGGAGGGCAAAAAAGCCAAAAAAGTCCTGG
TCATCGTAACAGGCGGGACGCTAATCATGAAGCCCAGCGGCACAGGAGGT
ACATTGGATGTTTGCCCGGGATTTCTCTCGGAGCTCTTGGCTTTGCCGGA
ATGGCGGCATGAGAATCTACCCGATATAGACGTTTTGGAATGGGATCACC
TCACCGATAGTGCCTGTATGGGGCCGGAGCATTGGATCAAGATTGCGGAG
GAAATTGAGAGTGCCTATTTTCGGTACGAAGGCTTCGTAGTCGTGCACGG
TACAGACACACTTGCCTACTCGGCGAGTGCATTGGCCTTCATGTTTGAGA
ACCTTGGAAAGCCAGTCGTGTTCACCGGGAGTCAAATTCCGCTGGCTGAG
GTGTACTCAGACGCGCGAAACAATCTTGTGAGCTCGCTGCTCTTTGCATG
CCGACAAGATTTTCAGGAAGTGTGCATTGTTTTCGGTTCCCGGCTGTTAC
GGGGCTGTCGGACCACCAAGGTTCACTCTTTTGACTTGCAAGCCTTTGCC
TCGCCCAACTTTCCCCCCTTGGCCACCCTCGGCGTCAACTTGGAGTTTGC
ATCAAATATTTCGCTTCCACCACCGCGCAAGCCATTGCGGGTACACAAAG
ATATGGATGCCAATTTGGTCGTTGTGCGGCTCGTGCCGGGCTTTGAGGAC
GACGCGTTATTTGCCATGATCAACCACAGCCGGCACTTGCATGGGATTAT
TCTGCTTTTATACGGTACGGGCAACGGCGACACATCCAGTCGCTCGGGTT
TGCTGGAGGCTGTTACGCTTGCCGCGCAAAAGGGTATACTTGTGGTCGTC
CTAACTCAATGCTTCCAAGGTGGAGTCTTGCTTGACAAGTACAGTGTGGG
GGTGGCTTTGTGCGCCGCTGGGGTTGTCAGTGGCCATGACATGACAGTCG
AGGCCTGCGTCACGAAGATTTCTTATCTCTTTTCTCGGACGGGCGGGGAC
ATCGATAAGGTGAAGAGCCTGCTTAGTGTCGACTTGCGCGGTGAGCTTTC
GAATGATTCCCGTTATCGCAGTGCCATCAAGGATGTGGTACCGCTGGCCA
AGCTGTAAATGCTCACGCAAATTGGGGAGGGCAAAAAAGCCAAAAAAGTC
CTGGTCATCGTAACAGGCGGGACGCTAATCATGAAGCCCAGCGGCACAGG
AGGTACATTGGATGTTTGCCCGGGATTTCTCTCGGAGCTCTTGGCTTTGC
CGGAATGGCGGCATGAGAATCTACCCGATATAGACGTTTTGGAATGGGAT
CACCTCACCGATAGTGCCTGTATGGGGCCGGAGCATTGGATCAAGATTGC
GGAGGAAATTGAGAGTGCCTATTTTCGGTACGAAGGCTTCGTAGTCGTGC
ACGGTACAGACACACTTGCCTACTCGGCGAGTGCATTGGCCTTCATGTTT
GAGAACCTTGGAAAGCCAGTCGTGTTCACCGGGAGTCAAATTCCGCTGGC
TGAGGTGTACTCAGACGCGCGAAACAATCTTGTGAGCTCGCTGCTCTTTG
CATGCCGACAAGATTTTCAGGAAGTGTGCATTGTTTTCGGTTCCCGGCTG
TTACGGGGCTGTCGGACCACCAAGGTTCACTCTTTTGACTTGCAAGCCTT
TGCCTCGCCCAACTTTCCCCCCTTGGCCACCCTCGGCGTCAACTTGGAGT
TTGCATCAAATATTTCGCTTCCACCACCGCGCAAGCCATTGCGGGTACAC
AAAGATATGGATGCCAATTTGGTCGTTGTGCGGCTCGTGCCGGGCTTTGA
GGACGACGCGTTATTTGCCATGATCAACCACAGCCGGCACTTGCATGGGA
TTATTCTGCTTTTATACGGTACGGGCAACGGCGACACATCCAGTCGCTCG
GGTTTGCTGGAGGCTGTTACGCTTGCCGCGCAAAAGGGTATACTTGTGGT
CGTCCTAACTCAATGCTTCCAAGGTGGAGTCTTGCTTGACAAGTACAGTG
TGGGGGTGGCTTTGTGCGCCGCTGGGGTTGTCAGTGGCCATGACATGACA
GTCGAGGCCTGCGTCACGAAGATTTCTTATCTCTTTTCTCGGACGGGCGG
GGACATCGATAAGGTGAAGAGCCTGCTTAGTGTCGACTTGCGCGGTGAGC
TTTCGAATGATTCCCGTTATCGCAGTGCCATCAAGGATGTGGTACCGCTG
GCCAAGCTGTAA

Synonyms

Publications