jgi.p|Nanoce1779_2|580737, mRNA_2549 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580737
Unique NamemRNA_2549
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1315
Alignment locationscaffold_5:634953..636460 -

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Properties
Property NameValue
TranscriptId580823
TrackFilteredModels2
ProteinId580737
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:634953..636460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580737gene_2549Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580737mRNA_2549-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2549CDS_2549Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2549 ID=mRNA_2549|Name=jgi.p|Nanoce1779_2|580737|organism=Nannochloropsis oceanica|type=mRNA|length=1315bp
ACAGGTCTTCCTCTTCCTTCTCAGCATGGTTGCGTCCTGCTTTACGACCG
GGTTCTCCCCCCTCATGGCTCCTAAGGCCGTACTTCTGGCCTCCAGCTCC
AAGCTCGCGGTGCCTCGCAGCACTGCAGAGAAGAAAGTCATGGCTGCCTC
AGTGACAAAGGGGGCGTGGGATGCGCGTTACCAGCACGCCGTGCCCCACA
CGACGGACTACTACCTGAAGTGCTGCTTAGGCGGCGTGCTTTCCTGCGGC
CTGACCCACTTGGCCGTGACACCTTTGGACGTGGCTAAATGCAACATGCA
AGTGGCCCCCGAGAAGTTTAAGGGCCTGCTCCCCTCCATAAAGCTCATCA
TGGCAGAGGAGGGCGCCGCCGGCATCTGGAAGGGATGGTTGCCCACGGCT
ATCGGCTACTCTCTGCAGGGCTGCTTTAAGTTCGGCCTTTACGAGTTCTT
CAAAGACTTTTACTCCAATATCGCGGGTGAGGAGGCCTCCTACACCTACC
GCGGGGTCATTTATCTTGCCGGGTCCGCCTCTGCCGAGGTCTTTGCTGAC
GCCGCCCTCTGCCCCCTGGAGATGGTCAAGGTAAAGGTCCAGACATCTCC
CAAGGGTACCTTCCCCACCGAGTTCTTCGCCGCGCTGTCCGCAATGGGCG
CCGACAAAGTCAATACGAAGTTCCCCTTCGGCTCCCTGGTGCCCCTCTGG
TCCCGACAGATCCCCTACACCATGGCCAAATTCTTCTTCTTTGAAAAGGT
CGTGGAGGCCTTCTACACGCACGTCTTCACCGCGCCCAAGGAGAGCTATG
GGAAGAGCACCCAGCTGGGTATTACCTTTGCTTCCGGCTACCTTGCCGGT
GTGATTTGCGCCATCGTCTCCCACCCTGCCGACACCATTGTCTCCAAGAT
GAGCAAGGGCAACAAAACCGCGGGCCAGATCTTGGCCGAGCTCGGACCCA
TGGGAGTATGGGGCGGCCTGGGTACCCGTATCATCATGATCGGTACCCTT
ACAGGCCTACAATGGTGGATCTACGACTCCTTCAAGACTGCCTTCGGTCT
CGGGACCTCCGGGCCGGCCGTCAAGAAGTAGGATAGGCGACTTGACGGAT
GGCGGGCAGAAATTTGACGACTTATCGAATCATATCGATGATCGCTACCG
CTGCTGCATATTTGGCTTTTATAGCAACTGCAACAGCAGTAGGAAGAGGA
AAGAGGAATACCTAAGTCAGGGAGATGATGAAAATTTTCCCGATTTTGTA
GGATGTCTTGTGTGTGGAAGGAATGGGAGGAAGAAGGAAGGGAGGAAAGA
GGAAGTCAATTATTG
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protein sequence of jgi.p|Nanoce1779_2|580737

>mRNA_2549-protein ID=mRNA_2549-protein|Name=jgi.p|Nanoce1779_2|580737|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MVASCFTTGFSPLMAPKAVLLASSSKLAVPRSTAEKKVMAASVTKGAWDA
RYQHAVPHTTDYYLKCCLGGVLSCGLTHLAVTPLDVAKCNMQVAPEKFKG
LLPSIKLIMAEEGAAGIWKGWLPTAIGYSLQGCFKFGLYEFFKDFYSNIA
GEEASYTYRGVIYLAGSASAEVFADAALCPLEMVKVKVQTSPKGTFPTEF
FAALSAMGADKVNTKFPFGSLVPLWSRQIPYTMAKFFFFEKVVEAFYTHV
FTAPKESYGKSTQLGITFASGYLAGVICAIVSHPADTIVSKMSKGNKTAG
QILAELGPMGVWGGLGTRIIMIGTLTGLQWWIYDSFKTAFGLGTSGPAVK
K*
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mRNA from alignment at scaffold_5:634953..636460-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2549 ID=mRNA_2549|Name=jgi.p|Nanoce1779_2|580737|organism=Nannochloropsis oceanica|type=mRNA|length=1508bp|location=Sequence derived from alignment at scaffold_5:634953..636460- (Nannochloropsis oceanica)
ACAGGTCTTCCTCTTCCTTCTCAGCATGGTTGCGTCCTGCTTTACGACCG
GGTTCTCCCCCCTCATGGCTCCTAAGGCCGTACTTCTGGCCTCCAGCTCC
AAGCTCGCGGTGCCTCGCAGCACTGCAGAGAAGAAAGTCATGGCTGCCTC
AGTGACAAAGGGGGCGTGGGATGCGCGTTACCAGCACGCCGTGCCCCACA
CGACGGACTACTACCTGAAGTGCTGCTTAGGCGGCGTGCTTTCCTGCGGC
CTGACCCACTTGGCCGTGACACCTTTGGACGTGGCTAAATGCAACATGCA
AGTGGCCCCCGAGAAGTTTAAGGGCCTGCTCCCCTCCATAAAGCTCATCA
TGGCAGAGGAGGGCGCCGCCGGCATCTGGAAGGGATGGTTGCCCACGGCT
ATCGGCTACTCTCTGCAGGGCTGCTTTAAGTTCGGCCTTTACGAGTTCTT
CAAAGACTTTTACTCCAATATCGCGGGTGAGGAGGCCTCCTACACCTACC
GCGGGGTCATTTATCTTGCCGGGTCCGCCTCTGCCGAGGTCTTTGCTGAC
GCCGCCCTCTGCCCCCTGGAGATGGTCAAGGTAAAGGTCCAGACATCTCC
CAAGGGTACCTTCCCCACCGAGTTCTTCGCCGCGCTGTCCGCAATGGGCG
CCGACAAAGTCAATACGAAGTTCCCCTTCGGCTCCCTGGTGCCCCTCTGG
TCCCGACAGATCCCCTACACCATGGCCAAATTCTTCTTCTTTGAAAAGGT
CGTGGAGGCCTTCTACACGCACGTCTTCACCGCGCCCAAGGAGAGCTATG
GGAAGAGCACCCAGCTGGGTATTACCTTTGCTTCCGGCTACCTTGCCGGT
GTGATTTGCGCCATCGTCTCCCACCCTGCCGACACCATTGTCTCCAAGAT
GAGCAAGGGCAACAAAACCGCGGGCCAGATCTTGGCCGAGCTCGGACCCA
TGGGAGTATGGGGCGGCCTGGGTACCCGTATCATCATGATCGGTACCCTT
ACAGGCCTACAATGGTGGATCTACGACTCCTTCAAGACTGCCTTCGGTCT
CGGGGTACGTGTACCTTTCCCCATCCCTTTTCCTGTCCCACCGTGCTCTT
TCCCGTTGTCGCACTTGTTTACTTCTTTGCTCTTCTTTCGATTATCACGT
CTCTCTATCGCTCCCTATTTCCCAATCCCGTCTCCTCCATCGAGCGATTC
ACTAACCACCTACTTTTGCTCTTTCTTCCTTTTCTTCCCTCCCTCAGACC
TCCGGGCCGGCCGTCAAGAAGTAGGATAGGCGACTTGACGGATGGCGGGC
AGAAATTTGACGACTTATCGAATCATATCGATGATCGCTACCGCTGCTGC
ATATTTGGCTTTTATAGCAACTGCAACAGCAGTAGGAAGAGGAAAGAGGA
ATACCTAAGTCAGGGAGATGATGAAAATTTTCCCGATTTTGTAGGATGTC
TTGTGTGTGGAAGGAATGGGAGGAAGAAGGAAGGGAGGAAAGAGGAAGTC
AATTATTG
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Coding sequence (CDS) from alignment at scaffold_5:634953..636460-

>mRNA_2549 ID=mRNA_2549|Name=jgi.p|Nanoce1779_2|580737|organism=Nannochloropsis oceanica|type=CDS|length=2112bp|location=Sequence derived from alignment at scaffold_5:634953..636460- (Nannochloropsis oceanica)
ACCTCCGGGCCGGCCGTCAAGAAGTAGATGGTTGCGTCCTGCTTTACGAC
CGGGTTCTCCCCCCTCATGGCTCCTAAGGCCGTACTTCTGGCCTCCAGCT
CCAAGCTCGCGGTGCCTCGCAGCACTGCAGAGAAGAAAGTCATGGCTGCC
TCAGTGACAAAGGGGGCGTGGGATGCGCGTTACCAGCACGCCGTGCCCCA
CACGACGGACTACTACCTGAAGTGCTGCTTAGGCGGCGTGCTTTCCTGCG
GCCTGACCCACTTGGCCGTGACACCTTTGGACGTGGCTAAATGCAACATG
CAAGTGGCCCCCGAGAAGTTTAAGGGCCTGCTCCCCTCCATAAAGCTCAT
CATGGCAGAGGAGGGCGCCGCCGGCATCTGGAAGGGATGGTTGCCCACGG
CTATCGGCTACTCTCTGCAGGGCTGCTTTAAGTTCGGCCTTTACGAGTTC
TTCAAAGACTTTTACTCCAATATCGCGGGTGAGGAGGCCTCCTACACCTA
CCGCGGGGTCATTTATCTTGCCGGGTCCGCCTCTGCCGAGGTCTTTGCTG
ACGCCGCCCTCTGCCCCCTGGAGATGGTCAAGGTAAAGGTCCAGACATCT
CCCAAGGGTACCTTCCCCACCGAGTTCTTCGCCGCGCTGTCCGCAATGGG
CGCCGACAAAGTCAATACGAAGTTCCCCTTCGGCTCCCTGGTGCCCCTCT
GGTCCCGACAGATCCCCTACACCATGGCCAAATTCTTCTTCTTTGAAAAG
GTCGTGGAGGCCTTCTACACGCACGTCTTCACCGCGCCCAAGGAGAGCTA
TGGGAAGAGCACCCAGCTGGGTATTACCTTTGCTTCCGGCTACCTTGCCG
GTGTGATTTGCGCCATCGTCTCCCACCCTGCCGACACCATTGTCTCCAAG
ATGAGCAAGGGCAACAAAACCGCGGGCCAGATCTTGGCCGAGCTCGGACC
CATGGGAGTATGGGGCGGCCTGGGTACCCGTATCATCATGATCGGTACCC
TTACAGGCCTACAATGGTGGATCTACGACTCCTTCAAGACTGCCTTCGGT
CTCGGGACCTCCGGGCCGGCCGTCAAGAAGTAGATGGTTGCGTCCTGCTT
TACGACCGGGTTCTCCCCCCTCATGGCTCCTAAGGCCGTACTTCTGGCCT
CCAGCTCCAAGCTCGCGGTGCCTCGCAGCACTGCAGAGAAGAAAGTCATG
GCTGCCTCAGTGACAAAGGGGGCGTGGGATGCGCGTTACCAGCACGCCGT
GCCCCACACGACGGACTACTACCTGAAGTGCTGCTTAGGCGGCGTGCTTT
CCTGCGGCCTGACCCACTTGGCCGTGACACCTTTGGACGTGGCTAAATGC
AACATGCAAGTGGCCCCCGAGAAGTTTAAGGGCCTGCTCCCCTCCATAAA
GCTCATCATGGCAGAGGAGGGCGCCGCCGGCATCTGGAAGGGATGGTTGC
CCACGGCTATCGGCTACTCTCTGCAGGGCTGCTTTAAGTTCGGCCTTTAC
GAGTTCTTCAAAGACTTTTACTCCAATATCGCGGGTGAGGAGGCCTCCTA
CACCTACCGCGGGGTCATTTATCTTGCCGGGTCCGCCTCTGCCGAGGTCT
TTGCTGACGCCGCCCTCTGCCCCCTGGAGATGGTCAAGGTAAAGGTCCAG
ACATCTCCCAAGGGTACCTTCCCCACCGAGTTCTTCGCCGCGCTGTCCGC
AATGGGCGCCGACAAAGTCAATACGAAGTTCCCCTTCGGCTCCCTGGTGC
CCCTCTGGTCCCGACAGATCCCCTACACCATGGCCAAATTCTTCTTCTTT
GAAAAGGTCGTGGAGGCCTTCTACACGCACGTCTTCACCGCGCCCAAGGA
GAGCTATGGGAAGAGCACCCAGCTGGGTATTACCTTTGCTTCCGGCTACC
TTGCCGGTGTGATTTGCGCCATCGTCTCCCACCCTGCCGACACCATTGTC
TCCAAGATGAGCAAGGGCAACAAAACCGCGGGCCAGATCTTGGCCGAGCT
CGGACCCATGGGAGTATGGGGCGGCCTGGGTACCCGTATCATCATGATCG
GTACCCTTACAGGCCTACAATGGTGGATCTACGACTCCTTCAAGACTGCC
TTCGGTCTCGGG
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Synonyms
Publications