Properties
| Property Name | Value |
|---|
| TranscriptId | 580822 |
| Track | FilteredModels2 |
| ProteinId | 580736 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:633146..634977 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2548 ID=mRNA_2548|Name=jgi.p|Nanoce1779_2|580736|organism=Nannochloropsis oceanica|type=mRNA|length=1316bp
ACAGTCATGGCAGACGAGTTGCGCTCGGTACAGGTCTTTGGCCGCAAGAA
AACGGCGACAGCCGTGGCCTTCGTAAAGGACGGACGTGGACTAATCAACG
TTAATGGGGCGCCCATCGAGAACGTGGAACCCGAGCTGCTGCGCTACAAG
ATCTTGGAGCCCGTGCTGCTCCTGAACGAAGCGACGTTCGCCAAGGTAGA
CATTCGTGTGCGCGTGAAGGGTGGCGGGCACACGGCGCAGATCTACGCTA
TCCGACAAGCCATCTCGAAGGGCATCGTGGCTTTCTATCAGAAATACGTA
GACGAGGCCAAGAAGAACGAGTTGAAGGAGACCCTGCTTGCCTACGACCG
CACCTTGCTGGTGGCTGACCCCCGACACTGTGAGCCGAAGAAGTTTGGCG
GCCCATCTGCACGAGCTCGTTACCAGAAGTCATATCGTTAGGGTGGCTGG
AAGATGGAGGAGAGGGGCACGGGAGGGAGAACAGGCTGCAGTCACGGAAG
GTGGCTGGTGCCTGCAGGGCCTTCGACATCATTGGCGCGGGGCGGGCGGT
TTCCTTTTTCTTACATGGGACAGGGTGGTGAAGGTCGGAGGATCTAGTGG
TATTGCAGTAGATAGCACCAGTGTTTGTCATTGTAAGACCCGCAGACTGA
AGTGGACCTCGTTGCGGTAGTGACTCACGCACGGAAATAGAAGAAAACAA
GAAGCTTAAAGCTCCTTCGGAAAAATCGAAAAACGAGAGTTCTTCAAGGA
CGATAAGTCCTACTATTCCTCCCTCCCCTTTTTTTCTTGCATCTCGTGGT
GTTTGTGTACGGGCTGTCTTGAGTTGGGGTTGCTTTTGGTCCGGTCTTGT
GTTGGCGTGTGTGGCAGAAGAGTGTGTTGGGAAGACGAGAAAATCAAGCG
GATCGAGTACTGAAGATGACGATGTAAGACATGTCTTAGTGGTAAGTTCT
TTCTCCTTCCTTTTCTCTGATCGGCTCATCCGCCGCTTAGCTGACACACA
TCACAAGCACACACAAGCACTCCAAATAATCATTCCCATCGCTTGCCTTG
ATTCTACCGTAGCTTCCCATCGTTCATTCAATAGAGGATATACAAACACG
TACAACATGGATCCAGCCAAAAATGACACAAGGCATAAATAAGAAAGTAA
AAAATGTATAAGCGTTGAACTGATGGTGAAAACGACGAAGCCCAACATTA
CTACGATAGGTTCCCGCCATTCTCTCCAACCTTCCACCCGCGTTCCTGTG
GGCATCAAGAAAACAATCGCTGTCAATAGGCTCACCCAGTCCAATAATTG
ACTTCCTCTTTCCTCC back to topprotein sequence of jgi.p|Nanoce1779_2|580736 >mRNA_2548-protein ID=mRNA_2548-protein|Name=jgi.p|Nanoce1779_2|580736|organism=Nannochloropsis oceanica|type=polypeptide|length=145bp
MADELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRYKIL
EPVLLLNEATFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDE
AKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR* back to topmRNA from alignment at scaffold_5:633146..634977+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2548 ID=mRNA_2548|Name=jgi.p|Nanoce1779_2|580736|organism=Nannochloropsis oceanica|type=mRNA|length=1832bp|location=Sequence derived from alignment at scaffold_5:633146..634977+ (Nannochloropsis oceanica)
ACAGTCATGGCAGACGAGTTGCGCTCGGTACAGGTCTTTGGCCGCAAGGT
ACGTGTGTTAGTCAAATTGTACCCAAACCATAAATGCCCGGGGAGTGTAT
GGGTGATAGGGAGGACACGGCCTGGAAAGAAGAGGGAAAGACGAGAGCGC
GGCGTGTGGGGCCAGATGCGGCGCGGCCACTTCCAAGCTGCTTGTGCAAG
TCTTGCTGGCGATTGTGTCATGGCTAAGCACTACTCATCTCTTACGTTAA
GGGACTGATTGCCTCGTGTCGCGGAGGGCATGTCATGGCCATGGACGGTT
GGAGGAATGGCGTACAAGACGGCGGATTTTATTGTCAACTATTAGCGTCT
TTCTGTCCTAATTGGAATTGCCTCGCCTCGCGCGTCTAGTCGGGCTCAAA
AGAGTCGCAGTAGATGATAATGTCTGGATTGCGGGCACGGGGCTTCTCTC
TGTGTCATGGCGGTGGCGAAGTAATGAATAAATAATTTTCTCCGTTTCGT
TCCTGTTCTGCTGATGCATCCGTACCCCAAACCCCCTTCTCCCTGCCCTT
TCCCATTCTGACAGAAAACGGCGACAGCCGTGGCCTTCGTAAAGGACGGA
CGTGGACTAATCAACGTTAATGGGGCGCCCATCGAGAACGTGGAACCCGA
GCTGCTGCGCTACAAGATCTTGGAGCCCGTGCTGCTCCTGAACGAAGCGA
CGTTCGCCAAGGTAGACATTCGTGTGCGCGTGAAGGGTGGCGGGCACACG
GCGCAGATCTACGCTATCCGACAAGCCATCTCGAAGGGCATCGTGGCTTT
CTATCAGAAATACGTAGACGAGGCCAAGAAGAACGAGTTGAAGGAGACCC
TGCTTGCCTACGACCGCACCTTGCTGGTGGCTGACCCCCGACACTGTGAG
CCGAAGAAGTTTGGCGGCCCATCTGCACGAGCTCGTTACCAGAAGTCATA
TCGTTAGGGTGGCTGGAAGATGGAGGAGAGGGGCACGGGAGGGAGAACAG
GCTGCAGTCACGGAAGGTGGCTGGTGCCTGCAGGGCCTTCGACATCATTG
GCGCGGGGCGGGCGGTTTCCTTTTTCTTACATGGGACAGGGTGGTGAAGG
TCGGAGGATCTAGTGGTATTGCAGTAGATAGCACCAGTGTTTGTCATTGT
AAGACCCGCAGACTGAAGTGGACCTCGTTGCGGTAGTGACTCACGCACGG
AAATAGAAGAAAACAAGAAGCTTAAAGCTCCTTCGGAAAAATCGAAAAAC
GAGAGTTCTTCAAGGACGATAAGTCCTACTATTCCTCCCTCCCCTTTTTT
TCTTGCATCTCGTGGTGTTTGTGTACGGGCTGTCTTGAGTTGGGGTTGCT
TTTGGTCCGGTCTTGTGTTGGCGTGTGTGGCAGAAGAGTGTGTTGGGAAG
ACGAGAAAATCAAGCGGATCGAGTACTGAAGATGACGATGTAAGACATGT
CTTAGTGGTAAGTTCTTTCTCCTTCCTTTTCTCTGATCGGCTCATCCGCC
GCTTAGCTGACACACATCACAAGCACACACAAGCACTCCAAATAATCATT
CCCATCGCTTGCCTTGATTCTACCGTAGCTTCCCATCGTTCATTCAATAG
AGGATATACAAACACGTACAACATGGATCCAGCCAAAAATGACACAAGGC
ATAAATAAGAAAGTAAAAAATGTATAAGCGTTGAACTGATGGTGAAAACG
ACGAAGCCCAACATTACTACGATAGGTTCCCGCCATTCTCTCCAACCTTC
CACCCGCGTTCCTGTGGGCATCAAGAAAACAATCGCTGTCAATAGGCTCA
CCCAGTCCAATAATTGACTTCCTCTTTCCTCC back to topCoding sequence (CDS) from alignment at scaffold_5:633146..634977+ >mRNA_2548 ID=mRNA_2548|Name=jgi.p|Nanoce1779_2|580736|organism=Nannochloropsis oceanica|type=CDS|length=870bp|location=Sequence derived from alignment at scaffold_5:633146..634977+ (Nannochloropsis oceanica)
ATGGCAGACGAGTTGCGCTCGGTACAGGTCTTTGGCCGCAAGAAAACGGC
GACAGCCGTGGCCTTCGTAAAGGACGGACGTGGACTAATCAACGTTAATG
GGGCGCCCATCGAGAACGTGGAACCCGAGCTGCTGCGCTACAAGATCTTG
GAGCCCGTGCTGCTCCTGAACGAAGCGACGTTCGCCAAGGTAGACATTCG
TGTGCGCGTGAAGGGTGGCGGGCACACGGCGCAGATCTACGCTATCCGAC
AAGCCATCTCGAAGGGCATCGTGGCTTTCTATCAGAAATACGTAGACGAG
GCCAAGAAGAACGAGTTGAAGGAGACCCTGCTTGCCTACGACCGCACCTT
GCTGGTGGCTGACCCCCGACACTGTGAGCCGAAGAAGTTTGGCGGCCCAT
CTGCACGAGCTCGTTACCAGAAGTCATATCGTTAGATGGCAGACGAGTTG
CGCTCGGTACAGGTCTTTGGCCGCAAGAAAACGGCGACAGCCGTGGCCTT
CGTAAAGGACGGACGTGGACTAATCAACGTTAATGGGGCGCCCATCGAGA
ACGTGGAACCCGAGCTGCTGCGCTACAAGATCTTGGAGCCCGTGCTGCTC
CTGAACGAAGCGACGTTCGCCAAGGTAGACATTCGTGTGCGCGTGAAGGG
TGGCGGGCACACGGCGCAGATCTACGCTATCCGACAAGCCATCTCGAAGG
GCATCGTGGCTTTCTATCAGAAATACGTAGACGAGGCCAAGAAGAACGAG
TTGAAGGAGACCCTGCTTGCCTACGACCGCACCTTGCTGGTGGCTGACCC
CCGACACTGTGAGCCGAAGAAGTTTGGCGGCCCATCTGCACGAGCTCGTT
ACCAGAAGTCATATCGTTAG back to top
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