jgi.p|Nanoce1779_2|580733, mRNA_2547 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580733
Unique NamemRNA_2547
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length930
Alignment locationscaffold_5:631530..632459 -

Link to JBrowse

Properties
Property NameValue
TranscriptId580819
TrackFilteredModels2
ProteinId580733
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:631530..632459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580733gene_2547Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580733mRNA_2547-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2547CDS_2547Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2547 ID=mRNA_2547|Name=jgi.p|Nanoce1779_2|580733|organism=Nannochloropsis oceanica|type=mRNA|length=930bp
AGTACCACGCACAGTTCCTTCCCCTGCATACACACACAATGGCTCCTAAG
TTTGACTTTAGCAAGGGCATCGGCGACCTGGAAAAGCATCTGTCGACCCG
CTCATACGTTGAGGGCTACTCCTTCAGCTCCGCGGACTCCTCAACCTTTG
CTGCCCTCCCCTCCGTGCCCTCTGCTGCTTCCAACCCCAATGCCTTCCGT
TGGTACCTGCATATTGCTGCCATTTCTGGTCTTAAGACTGTGCTGGGTGG
CGGTGGTGGCGCCGCGACCCCGTCCGTCAAGGCCCAGCCGGCAGGCAAGG
CGGCGGATGATGAAGACATGGACCTCTTCGGTGACGATGACGAAGAGGAG
GCCGCAAAGCCCACGCTGTCGCGCGCCGAGCAAGTGGCGGCAATGAAGGC
AGAAAAAGAGGCAAAAGAGAAGGCGAATAAGAAGCGAGACAGGAGTCAGA
TCGTGTTGGAAGTCAAGCCGACCGACACGGAGGTGAACCTTGACGAGCTG
TACATGACAATCAAGAAGGAGATAAGCCCGTCCGGTTTGACGTGGGGGGA
GGGCTACAACAAGTCGCCCGTGGCATACGGCATCTTTAAGCTTATCATCT
CCATGGTGGTGTTCGACGACGAGGTCTCGATCGACGACGTGGTGGATAAA
ATTGAGGCTATGGACGACCAGGTGCAGTCCGTGGACATCAACTCGTTCAA
CAAGCTCTAACTTGCAATAGATGTAGGGAGAGAGAGAGTGGAATTTTACA
TCTCTCGTGAAGGGGTCCACGAAAATTCAAGACAGAAGAAGCGAAGCCCT
GCTTAAGTGCTTCGAGGCGGCTTCCGCTGCCGCTGCCTACGCCCGTAGAT
CAGAAACCCGTCGATGCTGAGAGGCAGACGCCGATCAGACGCGACGATGA
AAGAATAAATATGTAGCAGCAAACTTACTA
back to top

protein sequence of jgi.p|Nanoce1779_2|580733

>mRNA_2547-protein ID=mRNA_2547-protein|Name=jgi.p|Nanoce1779_2|580733|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MAPKFDFSKGIGDLEKHLSTRSYVEGYSFSSADSSTFAALPSVPSAASNP
NAFRWYLHIAAISGLKTVLGGGGGAATPSVKAQPAGKAADDEDMDLFGDD
DEEEAAKPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVN
LDELYMTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDD
VVDKIEAMDDQVQSVDINSFNKL*
back to top

mRNA from alignment at scaffold_5:631530..632459-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2547 ID=mRNA_2547|Name=jgi.p|Nanoce1779_2|580733|organism=Nannochloropsis oceanica|type=mRNA|length=930bp|location=Sequence derived from alignment at scaffold_5:631530..632459- (Nannochloropsis oceanica)
AGTACCACGCACAGTTCCTTCCCCTGCATACACACACAATGGCTCCTAAG
TTTGACTTTAGCAAGGGCATCGGCGACCTGGAAAAGCATCTGTCGACCCG
CTCATACGTTGAGGGCTACTCCTTCAGCTCCGCGGACTCCTCAACCTTTG
CTGCCCTCCCCTCCGTGCCCTCTGCTGCTTCCAACCCCAATGCCTTCCGT
TGGTACCTGCATATTGCTGCCATTTCTGGTCTTAAGACTGTGCTGGGTGG
CGGTGGTGGCGCCGCGACCCCGTCCGTCAAGGCCCAGCCGGCAGGCAAGG
CGGCGGATGATGAAGACATGGACCTCTTCGGTGACGATGACGAAGAGGAG
GCCGCAAAGCCCACGCTGTCGCGCGCCGAGCAAGTGGCGGCAATGAAGGC
AGAAAAAGAGGCAAAAGAGAAGGCGAATAAGAAGCGAGACAGGAGTCAGA
TCGTGTTGGAAGTCAAGCCGACCGACACGGAGGTGAACCTTGACGAGCTG
TACATGACAATCAAGAAGGAGATAAGCCCGTCCGGTTTGACGTGGGGGGA
GGGCTACAACAAGTCGCCCGTGGCATACGGCATCTTTAAGCTTATCATCT
CCATGGTGGTGTTCGACGACGAGGTCTCGATCGACGACGTGGTGGATAAA
ATTGAGGCTATGGACGACCAGGTGCAGTCCGTGGACATCAACTCGTTCAA
CAAGCTCTAACTTGCAATAGATGTAGGGAGAGAGAGAGTGGAATTTTACA
TCTCTCGTGAAGGGGTCCACGAAAATTCAAGACAGAAGAAGCGAAGCCCT
GCTTAAGTGCTTCGAGGCGGCTTCCGCTGCCGCTGCCTACGCCCGTAGAT
CAGAAACCCGTCGATGCTGAGAGGCAGACGCCGATCAGACGCGACGATGA
AAGAATAAATATGTAGCAGCAAACTTACTA
back to top

Coding sequence (CDS) from alignment at scaffold_5:631530..632459-

>mRNA_2547 ID=mRNA_2547|Name=jgi.p|Nanoce1779_2|580733|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_5:631530..632459- (Nannochloropsis oceanica)
ATGGCTCCTAAGTTTGACTTTAGCAAGGGCATCGGCGACCTGGAAAAGCA
TCTGTCGACCCGCTCATACGTTGAGGGCTACTCCTTCAGCTCCGCGGACT
CCTCAACCTTTGCTGCCCTCCCCTCCGTGCCCTCTGCTGCTTCCAACCCC
AATGCCTTCCGTTGGTACCTGCATATTGCTGCCATTTCTGGTCTTAAGAC
TGTGCTGGGTGGCGGTGGTGGCGCCGCGACCCCGTCCGTCAAGGCCCAGC
CGGCAGGCAAGGCGGCGGATGATGAAGACATGGACCTCTTCGGTGACGAT
GACGAAGAGGAGGCCGCAAAGCCCACGCTGTCGCGCGCCGAGCAAGTGGC
GGCAATGAAGGCAGAAAAAGAGGCAAAAGAGAAGGCGAATAAGAAGCGAG
ACAGGAGTCAGATCGTGTTGGAAGTCAAGCCGACCGACACGGAGGTGAAC
CTTGACGAGCTGTACATGACAATCAAGAAGGAGATAAGCCCGTCCGGTTT
GACGTGGGGGGAGGGCTACAACAAGTCGCCCGTGGCATACGGCATCTTTA
AGCTTATCATCTCCATGGTGGTGTTCGACGACGAGGTCTCGATCGACGAC
GTGGTGGATAAAATTGAGGCTATGGACGACCAGGTGCAGTCCGTGGACAT
CAACTCGTTCAACAAGCTCTAA
back to top
Synonyms
Publications