Properties
| Property Name | Value |
|---|
| TranscriptId | 580818 |
| Track | FilteredModels2 |
| ProteinId | 580732 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:628839..631529 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2546 ID=mRNA_2546|Name=jgi.p|Nanoce1779_2|580732|organism=Nannochloropsis oceanica|type=mRNA|length=2533bp
ACAGGAAAACGACACATTAACTTAGAACCAATTACCACGCCCTAAGTCAG
GGTAAAGAAGCCGGTCGCGATCGCTCACACACGGTCGTGTTCACAAGCAA
CGAGACACATTTACCTCCCCTGTGTCTGTGCCACCTCCCCATTCTTTAGT
GCTTTACCCTGAGCGTCCAACCATCAGCAACGCATCCCACCCGACCCATC
ATCTCCCAACCGTTTCTATATCTTTCTCAGGTGCTGCGGCAAAGTCTCTA
TCCTCTAGGGTGAGAAAGGCGATAGTGGACAGCTCCAGAATGGCTGCCTT
TGTACCGGCGAATGAAGGCCTGTCCATGGCTTCCTGCATCCGACATGTCG
ACGGCACGGAGCTTCGGATAGGGGACGAAGTTTTCTTCGAGCGCGGCGAT
GGCGTGCTTGAGGAGGGCTTGGTGGAGAACTTGACACAGGAAGAGGACAC
GGTGACGGCTTTGGTGCAGTACAAGGATAAGGCCTGGTCCGGCTACAAAG
AGCGGCGGGACGTGGAAGGCTTGCTCGTCCACAAGCAACTTGTGACCAAG
AGCCGCACCCGTCGCACGGCTCGGCCCGTGTCACGGTATCAGCCTCCCTT
GGAACTCGTCTGCACCCGGCCGCTGCGCATGCCCAAGGCAGCCAAGCCCT
CCAAAGTCCCGCGGCAGGTGGACGAGAGGAAGCGCCGGCGTCGCAGCCAC
AAGCGCCTGCAAAAAGCGACCGCGCTGGGCAGAGCCAAGCGGGAGCGGCG
CCGCATCTTGTCACTTAAACTGTTGTCAGAAGATGATGCGGATGGCTCAA
TCCTGACAGAGGCCGAGCGGACGGAGTTGATGGGCTTGTTGGGCGTGACA
GAAGCGGCTCAGATCCGGGAAGCCGTAATGCTCTCGGACTCCGAGTCAGA
AGGCGGTGGTCGCGGCAGTGCAGAAAGCTCATGCAGCCAAAGCTCGACTT
CGGAATACTCCTCGTCCTCCTCGTTCTTCTCGTCGGCCTTCGGCGAAGAC
GACAGCGACTCGGAGCCAGACAGCGGGACGGAGAGCGAGGTGGGCCTGTC
GGACGTGTCCACGGACTCCTATCCCAGCAAGCCCGACTTCCTGTACTGGT
CCCGCGTTCATCAGCCGGCGGCGGGTCAGGTGCGAGGTACGGGCCGGAAG
CGCTTTGGCGTGGCGCCCAAGTACGATTCGGACGACTCGGCAGAGTCGGA
CGAGGAGCCGCGAGAGATGGGGGTCACGGCCACGGTCATGAGCTGGAGTG
GCCAGGAAAGGCGCGAGCTGCTACGAGAATACTTGCACCGGCCAGCTTCG
ATAACGCGTCGGTCGCAGAAGGGGGCGATTTCGTACAAGGAGTGGTGTCT
AGCTTTGCATGTAATAAGCGAAGATTCGGGGGGGGTCTCCAGCTTAGAGA
CCATGAACGCCATAAAGGGCGTGAAGCGCTGTGACGGCATGCGGACCATG
TATGGGGCCATCCGCGCGCCACTGATCCAGGAGATGATTCGATTTGCGGG
AGTGACGCGGCAGGACCGGTTCGTGGACATAGGATCGGGGCTGGGGACTG
TAGTGCTGCAGATGGCAGCCGTAACGGGCTGCAAGGCTACGGGTATTGAG
TTGGAGTCGTCTCGTTTTACGATCTCATCCATGCTAAGCGAGGAGCTGAT
CACGCTTATGAGGGAGCTAGGGACTGAGGGAGATGCAGCATTCGCGGCGG
ACTTGAAGAGCCGGATCGCGATGAGGAACGACGACATCCGGGAGCACGAA
TGCACCATCCTGCAGTCCAGCGTCCTCTACTTCAACAATCACGGCGTCTG
GTTCGACGAGACGTCGTCGAAGCGGGGCGAGATCTCGGTCGAGCACTGGG
TGGCAAAACTTTTTGCCAAAACGGCAGTTGGCACGCGCCTTATCATCCTC
AAAAGCATACCCCACTTAAAGGGCAACTGGTTCTCAGAGCAGATGTACAT
GGCGCGCTCGGACTGGCTGACGTGGGCCCGAGACTCCAAGCCGCTCTACT
GCTACACCAAACTCAAAGACACCTGGACCTGCGATAAGTGCCAGCATGAG
AATGCCATCGTCGGGGACGATGAGTCGCTGATATGGGAGATGAAGTGCGC
CAACAACTGCGCGTCTCGGGCCCATCGCCTCCGAGTCCGCCCGGGCCAGG
CTGCAGAGTAAGAGTCGAAGGTCAGGAGGCGTCAGTTGATCAGGTAGTGT
GATGTTCATAATAATAAAAGGACAATGATTTGTCGTCGCGAATCTGCTTG
TGCCTTTCTAGGTGGGGGGGGGGGTGGCGGGAGGGGAGGAAAAAAACAGG
AGAGAAAAAAGCATCAGCGCATACTCGTAATGCAATAGTATAGGGAGAAG
AGATGTGAACTACAGAACGATGTTTCAAAAGTGCCGGGGAGCAGGAAGAC
AAATAAAAAGAAGGGAAGTACGGTGTGTTAAGAGAGGCACGCCCTTTGAA
AGGAAAGTATTATGTCGAACATCGGGATGACATGAGCAAAGGAAAAAGTC
ATAATCTTAAAATAATAGTAGAGCCTCGAGTGG back to topprotein sequence of jgi.p|Nanoce1779_2|580732 >mRNA_2546-protein ID=mRNA_2546-protein|Name=jgi.p|Nanoce1779_2|580732|organism=Nannochloropsis oceanica|type=polypeptide|length=624bp
MAAFVPANEGLSMASCIRHVDGTELRIGDEVFFERGDGVLEEGLVENLTQ
EEDTVTALVQYKDKAWSGYKERRDVEGLLVHKQLVTKSRTRRTARPVSRY
QPPLELVCTRPLRMPKAAKPSKVPRQVDERKRRRRSHKRLQKATALGRAK
RERRRILSLKLLSEDDADGSILTEAERTELMGLLGVTEAAQIREAVMLSD
SESEGGGRGSAESSCSQSSTSEYSSSSSFFSSAFGEDDSDSEPDSGTESE
VGLSDVSTDSYPSKPDFLYWSRVHQPAAGQVRGTGRKRFGVAPKYDSDDS
AESDEEPREMGVTATVMSWSGQERRELLREYLHRPASITRRSQKGAISYK
EWCLALHVISEDSGGVSSLETMNAIKGVKRCDGMRTMYGAIRAPLIQEMI
RFAGVTRQDRFVDIGSGLGTVVLQMAAVTGCKATGIELESSRFTISSMLS
EELITLMRELGTEGDAAFAADLKSRIAMRNDDIREHECTILQSSVLYFNN
HGVWFDETSSKRGEISVEHWVAKLFAKTAVGTRLIILKSIPHLKGNWFSE
QMYMARSDWLTWARDSKPLYCYTKLKDTWTCDKCQHENAIVGDDESLIWE
MKCANNCASRAHRLRVRPGQAAE* back to topmRNA from alignment at scaffold_5:628839..631529+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2546 ID=mRNA_2546|Name=jgi.p|Nanoce1779_2|580732|organism=Nannochloropsis oceanica|type=mRNA|length=2691bp|location=Sequence derived from alignment at scaffold_5:628839..631529+ (Nannochloropsis oceanica)
ACAGGAAAACGACACATTAACTTAGAACCAATTACCACGCCCTAAGTCAG
GGTAAAGAAGCCGGTCGCGATCGCTCACACACGGTCGTGTTCACAAGCAA
CGAGACACATTTACCTCCCCTGTGTCTGTGCCACCTCCCCATTCTTTAGT
GCTTTACCCTGAGCGTCCAACCATCAGCAACGCATCCCACCCGACCCATC
ATCTCCCAACCGTTTCTATATCTTTCTCAGGTGCTGCGGCAAAGTCTCTA
TCCTCTAGGGTGAGAAAGGCGATAGTGGACAGCTCCAGAATGGCTGCCTT
TGTACCGGCGAATGAAGGCCTGTCCATGGCTTCCTGCATCCGACATGTCG
ACGGCACGGAGCTTCGGGTAAATATATGTGCTTGTACCTTGTCCAAAATG
CCCTCGAGTCGAGGCATGGCGAGAGATTTATGCAAGATCCCAGTTTCCAT
CCCGCTCCTTGTGCACGTCTCGCTCACTTTCCCTCCCTTTCCATGTTGTA
TGCAAATCCCTCCGCTTCCCGACAGATAGGGGACGAAGTTTTCTTCGAGC
GCGGCGATGGCGTGCTTGAGGAGGGCTTGGTGGAGAACTTGACACAGGAA
GAGGACACGGTGACGGCTTTGGTGCAGTACAAGGATAAGGCCTGGTCCGG
CTACAAAGAGCGGCGGGACGTGGAAGGCTTGCTCGTCCACAAGCAACTTG
TGACCAAGAGCCGCACCCGTCGCACGGCTCGGCCCGTGTCACGGTATCAG
CCTCCCTTGGAACTCGTCTGCACCCGGCCGCTGCGCATGCCCAAGGCAGC
CAAGCCCTCCAAAGTCCCGCGGCAGGTGGACGAGAGGAAGCGCCGGCGTC
GCAGCCACAAGCGCCTGCAAAAAGCGACCGCGCTGGGCAGAGCCAAGCGG
GAGCGGCGCCGCATCTTGTCACTTAAACTGTTGTCAGAAGATGATGCGGA
TGGCTCAATCCTGACAGAGGCCGAGCGGACGGAGTTGATGGGCTTGTTGG
GCGTGACAGAAGCGGCTCAGATCCGGGAAGCCGTAATGCTCTCGGACTCC
GAGTCAGAAGGCGGTGGTCGCGGCAGTGCAGAAAGCTCATGCAGCCAAAG
CTCGACTTCGGAATACTCCTCGTCCTCCTCGTTCTTCTCGTCGGCCTTCG
GCGAAGACGACAGCGACTCGGAGCCAGACAGCGGGACGGAGAGCGAGGTG
GGCCTGTCGGACGTGTCCACGGACTCCTATCCCAGCAAGCCCGACTTCCT
GTACTGGTCCCGCGTTCATCAGCCGGCGGCGGGTCAGGTGCGAGGTACGG
GCCGGAAGCGCTTTGGCGTGGCGCCCAAGTACGATTCGGACGACTCGGCA
GAGTCGGACGAGGAGCCGCGAGAGATGGGGGTCACGGCCACGGTCATGAG
CTGGAGTGGCCAGGAAAGGCGCGAGCTGCTACGAGAATACTTGCACCGGC
CAGCTTCGATAACGCGTCGGTCGCAGAAGGGGGCGATTTCGTACAAGGAG
TGGTGTCTAGCTTTGCATGTAATAAGCGAAGATTCGGGGGGGGTCTCCAG
CTTAGAGACCATGAACGCCATAAAGGGCGTGAAGCGCTGTGACGGCATGC
GGACCATGTATGGGGCCATCCGCGCGCCACTGATCCAGGAGATGATTCGA
TTTGCGGGAGTGACGCGGCAGGACCGGTTCGTGGACATAGGATCGGGGCT
GGGGACTGTAGTGCTGCAGATGGCAGCCGTAACGGGCTGCAAGGCTACGG
GTATTGAGTTGGAGTCGTCTCGTTTTACGATCTCATCCATGCTAAGCGAG
GAGCTGATCACGCTTATGAGGGAGCTAGGGACTGAGGGAGATGCAGCATT
CGCGGCGGACTTGAAGAGCCGGATCGCGATGAGGAACGACGACATCCGGG
AGCACGAATGCACCATCCTGCAGTCCAGCGTCCTCTACTTCAACAATCAC
GGCGTCTGGTTCGACGAGACGTCGTCGAAGCGGGGCGAGATCTCGGTCGA
GCACTGGGTGGCAAAACTTTTTGCCAAAACGGCAGTTGGCACGCGCCTTA
TCATCCTCAAAAGCATACCCCACTTAAAGGGCAACTGGTTCTCAGAGCAG
ATGTACATGGCGCGCTCGGACTGGCTGACGTGGGCCCGAGACTCCAAGCC
GCTCTACTGCTACACCAAACTCAAAGACACCTGGACCTGCGATAAGTGCC
AGCATGAGAATGCCATCGTCGGGGACGATGAGTCGCTGATATGGGAGATG
AAGTGCGCCAACAACTGCGCGTCTCGGGCCCATCGCCTCCGAGTCCGCCC
GGGCCAGGCTGCAGAGTAAGAGTCGAAGGTCAGGAGGCGTCAGTTGATCA
GGTAGTGTGATGTTCATAATAATAAAAGGACAATGATTTGTCGTCGCGAA
TCTGCTTGTGCCTTTCTAGGTGGGGGGGGGGGTGGCGGGAGGGGAGGAAA
AAAACAGGAGAGAAAAAAGCATCAGCGCATACTCGTAATGCAATAGTATA
GGGAGAAGAGATGTGAACTACAGAACGATGTTTCAAAAGTGCCGGGGAGC
AGGAAGACAAATAAAAAGAAGGGAAGTACGGTGTGTTAAGAGAGGCACGC
CCTTTGAAAGGAAAGTATTATGTCGAACATCGGGATGACATGAGCAAAGG
AAAAAGTCATAATCTTAAAATAATAGTAGAGCCTCGAGTGG back to topCoding sequence (CDS) from alignment at scaffold_5:628839..631529+ >mRNA_2546 ID=mRNA_2546|Name=jgi.p|Nanoce1779_2|580732|organism=Nannochloropsis oceanica|type=CDS|length=3744bp|location=Sequence derived from alignment at scaffold_5:628839..631529+ (Nannochloropsis oceanica)
ATGGCTGCCTTTGTACCGGCGAATGAAGGCCTGTCCATGGCTTCCTGCAT
CCGACATGTCGACGGCACGGAGCTTCGGATAGGGGACGAAGTTTTCTTCG
AGCGCGGCGATGGCGTGCTTGAGGAGGGCTTGGTGGAGAACTTGACACAG
GAAGAGGACACGGTGACGGCTTTGGTGCAGTACAAGGATAAGGCCTGGTC
CGGCTACAAAGAGCGGCGGGACGTGGAAGGCTTGCTCGTCCACAAGCAAC
TTGTGACCAAGAGCCGCACCCGTCGCACGGCTCGGCCCGTGTCACGGTAT
CAGCCTCCCTTGGAACTCGTCTGCACCCGGCCGCTGCGCATGCCCAAGGC
AGCCAAGCCCTCCAAAGTCCCGCGGCAGGTGGACGAGAGGAAGCGCCGGC
GTCGCAGCCACAAGCGCCTGCAAAAAGCGACCGCGCTGGGCAGAGCCAAG
CGGGAGCGGCGCCGCATCTTGTCACTTAAACTGTTGTCAGAAGATGATGC
GGATGGCTCAATCCTGACAGAGGCCGAGCGGACGGAGTTGATGGGCTTGT
TGGGCGTGACAGAAGCGGCTCAGATCCGGGAAGCCGTAATGCTCTCGGAC
TCCGAGTCAGAAGGCGGTGGTCGCGGCAGTGCAGAAAGCTCATGCAGCCA
AAGCTCGACTTCGGAATACTCCTCGTCCTCCTCGTTCTTCTCGTCGGCCT
TCGGCGAAGACGACAGCGACTCGGAGCCAGACAGCGGGACGGAGAGCGAG
GTGGGCCTGTCGGACGTGTCCACGGACTCCTATCCCAGCAAGCCCGACTT
CCTGTACTGGTCCCGCGTTCATCAGCCGGCGGCGGGTCAGGTGCGAGGTA
CGGGCCGGAAGCGCTTTGGCGTGGCGCCCAAGTACGATTCGGACGACTCG
GCAGAGTCGGACGAGGAGCCGCGAGAGATGGGGGTCACGGCCACGGTCAT
GAGCTGGAGTGGCCAGGAAAGGCGCGAGCTGCTACGAGAATACTTGCACC
GGCCAGCTTCGATAACGCGTCGGTCGCAGAAGGGGGCGATTTCGTACAAG
GAGTGGTGTCTAGCTTTGCATGTAATAAGCGAAGATTCGGGGGGGGTCTC
CAGCTTAGAGACCATGAACGCCATAAAGGGCGTGAAGCGCTGTGACGGCA
TGCGGACCATGTATGGGGCCATCCGCGCGCCACTGATCCAGGAGATGATT
CGATTTGCGGGAGTGACGCGGCAGGACCGGTTCGTGGACATAGGATCGGG
GCTGGGGACTGTAGTGCTGCAGATGGCAGCCGTAACGGGCTGCAAGGCTA
CGGGTATTGAGTTGGAGTCGTCTCGTTTTACGATCTCATCCATGCTAAGC
GAGGAGCTGATCACGCTTATGAGGGAGCTAGGGACTGAGGGAGATGCAGC
ATTCGCGGCGGACTTGAAGAGCCGGATCGCGATGAGGAACGACGACATCC
GGGAGCACGAATGCACCATCCTGCAGTCCAGCGTCCTCTACTTCAACAAT
CACGGCGTCTGGTTCGACGAGACGTCGTCGAAGCGGGGCGAGATCTCGGT
CGAGCACTGGGTGGCAAAACTTTTTGCCAAAACGGCAGTTGGCACGCGCC
TTATCATCCTCAAAAGCATACCCCACTTAAAGGGCAACTGGTTCTCAGAG
CAGATGTACATGGCGCGCTCGGACTGGCTGACGTGGGCCCGAGACTCCAA
GCCGCTCTACTGCTACACCAAACTCAAAGACACCTGGACCTGCGATAAGT
GCCAGCATGAGAATGCCATCGTCGGGGACGATGAGTCGCTGATATGGGAG
ATGAAGTGCGCCAACAACTGCGCGTCTCGGGCCCATCGCCTCCGAGTCCG
CCCGGGCCAGGCTGCAGAGTAAATGGCTGCCTTTGTACCGGCGAATGAAG
GCCTGTCCATGGCTTCCTGCATCCGACATGTCGACGGCACGGAGCTTCGG
ATAGGGGACGAAGTTTTCTTCGAGCGCGGCGATGGCGTGCTTGAGGAGGG
CTTGGTGGAGAACTTGACACAGGAAGAGGACACGGTGACGGCTTTGGTGC
AGTACAAGGATAAGGCCTGGTCCGGCTACAAAGAGCGGCGGGACGTGGAA
GGCTTGCTCGTCCACAAGCAACTTGTGACCAAGAGCCGCACCCGTCGCAC
GGCTCGGCCCGTGTCACGGTATCAGCCTCCCTTGGAACTCGTCTGCACCC
GGCCGCTGCGCATGCCCAAGGCAGCCAAGCCCTCCAAAGTCCCGCGGCAG
GTGGACGAGAGGAAGCGCCGGCGTCGCAGCCACAAGCGCCTGCAAAAAGC
GACCGCGCTGGGCAGAGCCAAGCGGGAGCGGCGCCGCATCTTGTCACTTA
AACTGTTGTCAGAAGATGATGCGGATGGCTCAATCCTGACAGAGGCCGAG
CGGACGGAGTTGATGGGCTTGTTGGGCGTGACAGAAGCGGCTCAGATCCG
GGAAGCCGTAATGCTCTCGGACTCCGAGTCAGAAGGCGGTGGTCGCGGCA
GTGCAGAAAGCTCATGCAGCCAAAGCTCGACTTCGGAATACTCCTCGTCC
TCCTCGTTCTTCTCGTCGGCCTTCGGCGAAGACGACAGCGACTCGGAGCC
AGACAGCGGGACGGAGAGCGAGGTGGGCCTGTCGGACGTGTCCACGGACT
CCTATCCCAGCAAGCCCGACTTCCTGTACTGGTCCCGCGTTCATCAGCCG
GCGGCGGGTCAGGTGCGAGGTACGGGCCGGAAGCGCTTTGGCGTGGCGCC
CAAGTACGATTCGGACGACTCGGCAGAGTCGGACGAGGAGCCGCGAGAGA
TGGGGGTCACGGCCACGGTCATGAGCTGGAGTGGCCAGGAAAGGCGCGAG
CTGCTACGAGAATACTTGCACCGGCCAGCTTCGATAACGCGTCGGTCGCA
GAAGGGGGCGATTTCGTACAAGGAGTGGTGTCTAGCTTTGCATGTAATAA
GCGAAGATTCGGGGGGGGTCTCCAGCTTAGAGACCATGAACGCCATAAAG
GGCGTGAAGCGCTGTGACGGCATGCGGACCATGTATGGGGCCATCCGCGC
GCCACTGATCCAGGAGATGATTCGATTTGCGGGAGTGACGCGGCAGGACC
GGTTCGTGGACATAGGATCGGGGCTGGGGACTGTAGTGCTGCAGATGGCA
GCCGTAACGGGCTGCAAGGCTACGGGTATTGAGTTGGAGTCGTCTCGTTT
TACGATCTCATCCATGCTAAGCGAGGAGCTGATCACGCTTATGAGGGAGC
TAGGGACTGAGGGAGATGCAGCATTCGCGGCGGACTTGAAGAGCCGGATC
GCGATGAGGAACGACGACATCCGGGAGCACGAATGCACCATCCTGCAGTC
CAGCGTCCTCTACTTCAACAATCACGGCGTCTGGTTCGACGAGACGTCGT
CGAAGCGGGGCGAGATCTCGGTCGAGCACTGGGTGGCAAAACTTTTTGCC
AAAACGGCAGTTGGCACGCGCCTTATCATCCTCAAAAGCATACCCCACTT
AAAGGGCAACTGGTTCTCAGAGCAGATGTACATGGCGCGCTCGGACTGGC
TGACGTGGGCCCGAGACTCCAAGCCGCTCTACTGCTACACCAAACTCAAA
GACACCTGGACCTGCGATAAGTGCCAGCATGAGAATGCCATCGTCGGGGA
CGATGAGTCGCTGATATGGGAGATGAAGTGCGCCAACAACTGCGCGTCTC
GGGCCCATCGCCTCCGAGTCCGCCCGGGCCAGGCTGCAGAGTAA back to top
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