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Properties
| Property Name | Value |
|---|
| TranscriptId | 580816 |
| Track | FilteredModels2 |
| ProteinId | 580730 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:626925..628637 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2545 ID=mRNA_2545|Name=jgi.p|Nanoce1779_2|580730|organism=Nannochloropsis oceanica|type=mRNA|length=1713bp
GCGGCGGTGAAAGAGGCGGCCAGGGGAGGGGTGGAGGATGCCACGCTGGC
AGTGGGGGTCAAGATGCTGGTGCTGGCGCTGGACTTGGCACTGGACGAGG
CGGTGCGGCAGAAAGAGGCATCAAACGGTACGTTTTTAGCAGGAAAACAT
AAATGAAATATTGTTTTATTTACTTCTCTCCATATCCGCCCAGGACAGGC
GTTCGCACATGGAGGACGAGAGGACGTACGACCAGCAGCAGTCGTCCCCA
ACCAAAAGGTCAAGGGTGACCGCGGGAGACAGCGGCCGCCTCAACTCCCA
TGAAACCTCATGGATATCCGTTATTTCCTATAGTGTCACTCATAGTACCA
CTCGTAGCAGCAATGGAAAAGTTATTGCTCCTCGCCCTCAAGCACTACCA
CCACCTCTCCCTCTCGCTCCTCTAGCGTCCTCCTCCTGCTCATCCGCACC
CTCCCCTGCATCCTCCTCCTCCGCATCTTCTTCATCGTCATCATCATCTT
CTTCTTCTTCTTCTCCTCCTTCTTCTTCTGCTGCTACTGAAGACTGGCAG
CACAAGGCCCTGTGGCTCGAGCATCGTGCGCATGCCGAAGGTGTTCAAAC
CGTTAATTCAAGGGAGGTAGAAGAGGAGGACCATGGCGTGAAGAACATGG
CGGTGGGAGAGGAAGGGTTGAGTAGTGAAGGAGGACGAGAGAGCAGTAGC
TGGGCGCCCTTGCCTCCGCGACGACACTGGGACCGAAGGCGGGGACAGCA
GCAGGGACGGTCACGGGCGGCTTCGATCGAGATGGTGACGTCGTAGTCAG
AACCTGCGTTTCACAAGGCACGGGCAGAAAGATTTGAGGAGCAAGCATAA
AGCACTGCCCTTTGTGGACGGAAAGCGAGAAGCCTCTTTTTGTACCATGG
TGGACGCTGAAGAGTAGCAGCGCTACAAGGCTGAGCACAATAAAGTTAGC
TTTCCCCCGATATTGGGCGATGAGACCGTCACTATACGGTGATAACGGGG
TGCTGGAATACCTTCAATGCCGCCTGGGTGGTGGGAACGGGTCAGGTACG
GCACTTTCTTCGCAAGACCGCTTCAGGGCCTGCTGTCGGTTGTAGAGAAC
GGGATGGGCAAGGAGGCAGAAGCTGTGGAGATGCATATGGTGCAGGAGCA
GCGTGGGAATAGGAGGAGTTCGGGGAGGATTATGAGCTGCATAGCAGCTA
AATTACTTCCAAATCGCCAACCTCCTTCCTCTTACCGTGCACTCGGCACT
GCGTGCCCACGTCCTGCTCGGAGCAGCACGCTATGGCTGCAGCCGTGCAG
CAGGGTGCTCTCGAAGTTTTTCCCTTGATGCTCGGTGCAGGCGCAGAGCT
GGCAGCTCTCAATGCTGCCGGCGCAGAAGGATGATAACGTCCATCACGAG
CAGCAGCGGCAGCGTGTCAACGGGGTGCGGATAATTACGGGACAAAATGT
CAGGGCTGAGTTAATCCGCTACACCTGATGCACATCAAGAGGCTCGTCCC
TCCAGATCACTTTGGTGGCTGCAAAGTGAATAACGACGGCTTTAAGATCC
TGAAGCTTTAAGGGGAAGAGGAGAGGGTATATGAAGTACTTGAGTGGTAC
CAGTGCCGTGACGCGGGTCGCAATTATTGTAAGCGAGCGAAAGAAAAGGC
CAGGGGCTCTTAGAGTGAAAACGAAAGGAGCAAGAATAGATGCATGTCCC
ACTCCTTACACCT back to topprotein sequence of jgi.p|Nanoce1779_2|580730 >mRNA_2545-protein ID=mRNA_2545-protein|Name=jgi.p|Nanoce1779_2|580730|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MEDERTYDQQQSSPTKRSRVTAGDSGRLNSHETSWISVISYSVTHSTTRS
SNGKVIAPRPQALPPPLPLAPLASSSCSSAPSPASSSSASSSSSSSSSSS
SSPPSSSAATEDWQHKALWLEHRAHAEGVQTVNSREVEEEDHGVKNMAVG
EEGLSSEGGRESSSWAPLPPRRHWDRRRGQQQGRSRAASIEMVTS* back to topmRNA from alignment at scaffold_5:626925..628637- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2545 ID=mRNA_2545|Name=jgi.p|Nanoce1779_2|580730|organism=Nannochloropsis oceanica|type=mRNA|length=1713bp|location=Sequence derived from alignment at scaffold_5:626925..628637- (Nannochloropsis oceanica)
GCGGCGGTGAAAGAGGCGGCCAGGGGAGGGGTGGAGGATGCCACGCTGGC
AGTGGGGGTCAAGATGCTGGTGCTGGCGCTGGACTTGGCACTGGACGAGG
CGGTGCGGCAGAAAGAGGCATCAAACGGTACGTTTTTAGCAGGAAAACAT
AAATGAAATATTGTTTTATTTACTTCTCTCCATATCCGCCCAGGACAGGC
GTTCGCACATGGAGGACGAGAGGACGTACGACCAGCAGCAGTCGTCCCCA
ACCAAAAGGTCAAGGGTGACCGCGGGAGACAGCGGCCGCCTCAACTCCCA
TGAAACCTCATGGATATCCGTTATTTCCTATAGTGTCACTCATAGTACCA
CTCGTAGCAGCAATGGAAAAGTTATTGCTCCTCGCCCTCAAGCACTACCA
CCACCTCTCCCTCTCGCTCCTCTAGCGTCCTCCTCCTGCTCATCCGCACC
CTCCCCTGCATCCTCCTCCTCCGCATCTTCTTCATCGTCATCATCATCTT
CTTCTTCTTCTTCTCCTCCTTCTTCTTCTGCTGCTACTGAAGACTGGCAG
CACAAGGCCCTGTGGCTCGAGCATCGTGCGCATGCCGAAGGTGTTCAAAC
CGTTAATTCAAGGGAGGTAGAAGAGGAGGACCATGGCGTGAAGAACATGG
CGGTGGGAGAGGAAGGGTTGAGTAGTGAAGGAGGACGAGAGAGCAGTAGC
TGGGCGCCCTTGCCTCCGCGACGACACTGGGACCGAAGGCGGGGACAGCA
GCAGGGACGGTCACGGGCGGCTTCGATCGAGATGGTGACGTCGTAGTCAG
AACCTGCGTTTCACAAGGCACGGGCAGAAAGATTTGAGGAGCAAGCATAA
AGCACTGCCCTTTGTGGACGGAAAGCGAGAAGCCTCTTTTTGTACCATGG
TGGACGCTGAAGAGTAGCAGCGCTACAAGGCTGAGCACAATAAAGTTAGC
TTTCCCCCGATATTGGGCGATGAGACCGTCACTATACGGTGATAACGGGG
TGCTGGAATACCTTCAATGCCGCCTGGGTGGTGGGAACGGGTCAGGTACG
GCACTTTCTTCGCAAGACCGCTTCAGGGCCTGCTGTCGGTTGTAGAGAAC
GGGATGGGCAAGGAGGCAGAAGCTGTGGAGATGCATATGGTGCAGGAGCA
GCGTGGGAATAGGAGGAGTTCGGGGAGGATTATGAGCTGCATAGCAGCTA
AATTACTTCCAAATCGCCAACCTCCTTCCTCTTACCGTGCACTCGGCACT
GCGTGCCCACGTCCTGCTCGGAGCAGCACGCTATGGCTGCAGCCGTGCAG
CAGGGTGCTCTCGAAGTTTTTCCCTTGATGCTCGGTGCAGGCGCAGAGCT
GGCAGCTCTCAATGCTGCCGGCGCAGAAGGATGATAACGTCCATCACGAG
CAGCAGCGGCAGCGTGTCAACGGGGTGCGGATAATTACGGGACAAAATGT
CAGGGCTGAGTTAATCCGCTACACCTGATGCACATCAAGAGGCTCGTCCC
TCCAGATCACTTTGGTGGCTGCAAAGTGAATAACGACGGCTTTAAGATCC
TGAAGCTTTAAGGGGAAGAGGAGAGGGTATATGAAGTACTTGAGTGGTAC
CAGTGCCGTGACGCGGGTCGCAATTATTGTAAGCGAGCGAAAGAAAAGGC
CAGGGGCTCTTAGAGTGAAAACGAAAGGAGCAAGAATAGATGCATGTCCC
ACTCCTTACACCT back to topCoding sequence (CDS) from alignment at scaffold_5:626925..628637- >mRNA_2545 ID=mRNA_2545|Name=jgi.p|Nanoce1779_2|580730|organism=Nannochloropsis oceanica|type=CDS|length=588bp|location=Sequence derived from alignment at scaffold_5:626925..628637- (Nannochloropsis oceanica)
ATGGAGGACGAGAGGACGTACGACCAGCAGCAGTCGTCCCCAACCAAAAG
GTCAAGGGTGACCGCGGGAGACAGCGGCCGCCTCAACTCCCATGAAACCT
CATGGATATCCGTTATTTCCTATAGTGTCACTCATAGTACCACTCGTAGC
AGCAATGGAAAAGTTATTGCTCCTCGCCCTCAAGCACTACCACCACCTCT
CCCTCTCGCTCCTCTAGCGTCCTCCTCCTGCTCATCCGCACCCTCCCCTG
CATCCTCCTCCTCCGCATCTTCTTCATCGTCATCATCATCTTCTTCTTCT
TCTTCTCCTCCTTCTTCTTCTGCTGCTACTGAAGACTGGCAGCACAAGGC
CCTGTGGCTCGAGCATCGTGCGCATGCCGAAGGTGTTCAAACCGTTAATT
CAAGGGAGGTAGAAGAGGAGGACCATGGCGTGAAGAACATGGCGGTGGGA
GAGGAAGGGTTGAGTAGTGAAGGAGGACGAGAGAGCAGTAGCTGGGCGCC
CTTGCCTCCGCGACGACACTGGGACCGAAGGCGGGGACAGCAGCAGGGAC
GGTCACGGGCGGCTTCGATCGAGATGGTGACGTCGTAG back to top
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