Properties
| Property Name | Value |
|---|
| TranscriptId | 331714 |
| Track | FilteredModels2 |
| ProteinId | 331628 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:605181..607545 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2541 ID=mRNA_2541|Name=jgi.p|Nanoce1779_2|331628|organism=Nannochloropsis oceanica|type=mRNA|length=2181bp
CTGCCGCTCGCTGTGAGATGAGCATCCCCCATGTTTATTGTTGCCCCCCC
TTGTGTAAGCTTGTAAAACCAGCGGCTTGCCATGAGGTAGTAAGACTCTC
TGTGCTTATGCTGCATATGCTGCTTTAATCACTTTTCCTATACCGTAGAT
TTAGGCCTCAGCCTCCCCTTCGCACCGGGAGCGCCCATCATCCAAGGCCT
AGCATTTCCTCAAGTTCCGCAAGGCTCGTACATACGCGGCATGTGGTGGC
TCGTAAAGCCTAGGCTGCTCGTATTCTGCGGCGTCGTCCTCCTGATCGGC
CAGCTATGCGCTCAGACAGAGGGCGGGAAGCGTTTCACACACCTACCAAT
GCTGGATTTCTTCCGTGCCCGTGTTTGCCAGACTTGCGACCTAGACGGGT
TTGTGGGGGACTGCGGCTGCGAGTTTGACACGGTTAACAAAGCCACGCGT
CAGTACTTTTTTCCGCTGTTGGGGGATCTGGCACAGCGCACCTTCTTTCG
GTACTTCAAAGTGAACCTGAGCAAGGCCTGCCCCTTTTGGCACGAGGAGA
TGATATGCTCCATCCGGGACTGCGCCGTGCTGGAGTGCGAAGCCCATGAG
GTCCCGCCCGTCTGGATCGAGCGAGATGCCGAAGGCCGGGCGATACGGGA
ATGTCTCGGGGACTCCACGACGGCCTTAAGCGAGATGGAAAAGCTTCTGG
GCACGGTGGACCGCAAGGAGGCCAAGGCGGGTGTCGATGCCTTCGCGGGC
TGGGCGGAGGGGGACAACGCCAAAGTTTGGATCGAGCAGGAGGAGGATGA
CCAGGGTATGAATTACATCAACCTCCTGCGCAACATCGAGCGCTTCACGG
GCTATGCAGGGCCCTCGGCTCGTCGAGTCTGGCGCTCTATTTACGAGAAT
TGCTTCGAGCTGTCCCCTATGGAGCTGCACGCGGGCGGGCACTGCCTGGA
GAAGCGCGTCTTCTACCGCCTGATCGCCGGTCTGCAATCATCCATCTCCA
CACATTTAGCCTTGGACTATTACGACTCGGCCCAGGACCGGTGGTGCCCC
AACACGGCGCTGTTCGTGGAGAAGGTGGGCATGCATCCCGAGCGCATCCA
CAACCTGTACTTCGCCTACCTGTTCCTGCTGCGCGCCATCAACATGGCCG
GACCCGAGCTTCAGGCCTACGACTACGACACGGGGAACCCCGAGGATGAT
GAATGGGTACGCGGTGCAGTCCGGGGCCTGGTGCGTGCTTCTTCCAACGC
CACCACAGCTGAGCAGTGCCACCGCGCATTTGACGAGAGCGGCATGTTCC
AGCCGCGCGGGCTGGCGGGCGGATCCGACGCGGTAGCAGCAGAGGAAGCC
GAGCTGCACAAGCTGCGCCATGATTTTTTCGTGCGCTTCCACAACATCTC
ACGCATCATGGACTGCGTCGGGTGCGAGAAATGCCGGCTCTGGGGCAAGC
TGCAGGTTCTGGGCCTGGGCACGGCCATCAAGGTGGTGCTGGGACGGCCC
GAGGACCGGACGGCGGAAGGCCGCCTGTCATTTCAACGCAACGAGGTCAT
TGCCCTTATCAACACGGCCCACCAGCTGGCCAAGAGTGTCAAGGCCGTGG
ACGACTTCCAGAAGCTGGAGTTCGACGAGATTGTGCAGCGCTGGATGTGG
CTGGCCGGCCTGGTGCTCATTGTCACTGGTGCTTTGCTAGGCCTGCTTCT
TCGACGGCAAGGGCCAAAAAGAAGCAATCGGCATCACGGTGAGTGCGGGA
AGGCAACAAATGGAATGGATTCCGCTGCGCAAGGCGTGCTACCTATTGAT
TATGAACGTACGAAGAAGGCAAATTAGAATGAAGTGATGAGTTTTCGCGC
TTTATGTTGGAAAGTTTTTGAGTGGTGAAGAAAAGGAGAGCGCATATGTG
GAGTTCACACTTGATTGCAAAGTGTGTAGCATTCATTCAAAGCCACACTT
AGTCTTTCCCCCCGGCCCTTGGAAATTCTCGAGTGGACGAGGGTGTACAT
TTGTATACATTAGATAATGAGCGAAGAAAGACCTCACAAAAGGACCAATC
AACTAATATAGAAATGAACAGAAAGTAGGGCGCATGATTTTTCACCGGCC
CAGACTTCCATGGATTTTTCCATGTACTGTTATATATTTTGGGGACAAAG
GTCCGAAATACTTGCTTCCCGGAAAAATTAA back to topprotein sequence of jgi.p|Nanoce1779_2|331628 >mRNA_2541-protein ID=mRNA_2541-protein|Name=jgi.p|Nanoce1779_2|331628|organism=Nannochloropsis oceanica|type=polypeptide|length=529bp
MWWLVKPRLLVFCGVVLLIGQLCAQTEGGKRFTHLPMLDFFRARVCQTCD
LDGFVGDCGCEFDTVNKATRQYFFPLLGDLAQRTFFRYFKVNLSKACPFW
HEEMICSIRDCAVLECEAHEVPPVWIERDAEGRAIRECLGDSTTALSEME
KLLGTVDRKEAKAGVDAFAGWAEGDNAKVWIEQEEDDQGMNYINLLRNIE
RFTGYAGPSARRVWRSIYENCFELSPMELHAGGHCLEKRVFYRLIAGLQS
SISTHLALDYYDSAQDRWCPNTALFVEKVGMHPERIHNLYFAYLFLLRAI
NMAGPELQAYDYDTGNPEDDEWVRGAVRGLVRASSNATTAEQCHRAFDES
GMFQPRGLAGGSDAVAAEEAELHKLRHDFFVRFHNISRIMDCVGCEKCRL
WGKLQVLGLGTAIKVVLGRPEDRTAEGRLSFQRNEVIALINTAHQLAKSV
KAVDDFQKLEFDEIVQRWMWLAGLVLIVTGALLGLLLRRQGPKRSNRHHG
ECGKATNGMDSAAQGVLPIDYERTKKAN* back to topmRNA from alignment at scaffold_5:605181..607545- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2541 ID=mRNA_2541|Name=jgi.p|Nanoce1779_2|331628|organism=Nannochloropsis oceanica|type=mRNA|length=2365bp|location=Sequence derived from alignment at scaffold_5:605181..607545- (Nannochloropsis oceanica)
CTGCCGCTCGCTGTGAGATGAGCATCCCCCATGTTTATTGTTGCCCCCCC
TTGTGTAAGCTTGTAAAACCAGCGGCTTGCCATGAGGTAGTAAGACTCTC
TGTGCTTATGCTGCATATGCTGCTTTAATCACTTTTCCTATACCGTAGAT
TTAGGCCTCAGCCTCCCCTTCGCACCGGGAGCGCCCATCATCCAAGGCCT
AGCATTTCCTCAAGTTCCGCAAGGCTCGTACATACGCGGCATGTGGTGGC
TCGTAAAGCCTAGGCTGCTCGTATTCTGCGGCGTCGTCCTCCTGATCGGC
CAGCTATGCGCTCAGACAGAGGTAAGAAACAGACGGGACGCGATGGGTTG
GGTGGGTGGGTAGGGATCAACTTACGGTCTCAGATACAGTATGTGATAAA
CCACGCGACATGCCCCTGGTGTGCGCTTCTCACATTTATTCATGACATTG
CGTACTCCAACTCACATACACCCCTCTCGCTCTCGCTATATCTCTCCCAT
CGCAGGGCGGGAAGCGTTTCACACACCTACCAATGCTGGATTTCTTCCGT
GCCCGTGTTTGCCAGACTTGCGACCTAGACGGGTTTGTGGGGGACTGCGG
CTGCGAGTTTGACACGGTTAACAAAGCCACGCGTCAGTACTTTTTTCCGC
TGTTGGGGGATCTGGCACAGCGCACCTTCTTTCGGTACTTCAAAGTGAAC
CTGAGCAAGGCCTGCCCCTTTTGGCACGAGGAGATGATATGCTCCATCCG
GGACTGCGCCGTGCTGGAGTGCGAAGCCCATGAGGTCCCGCCCGTCTGGA
TCGAGCGAGATGCCGAAGGCCGGGCGATACGGGAATGTCTCGGGGACTCC
ACGACGGCCTTAAGCGAGATGGAAAAGCTTCTGGGCACGGTGGACCGCAA
GGAGGCCAAGGCGGGTGTCGATGCCTTCGCGGGCTGGGCGGAGGGGGACA
ACGCCAAAGTTTGGATCGAGCAGGAGGAGGATGACCAGGGTATGAATTAC
ATCAACCTCCTGCGCAACATCGAGCGCTTCACGGGCTATGCAGGGCCCTC
GGCTCGTCGAGTCTGGCGCTCTATTTACGAGAATTGCTTCGAGCTGTCCC
CTATGGAGCTGCACGCGGGCGGGCACTGCCTGGAGAAGCGCGTCTTCTAC
CGCCTGATCGCCGGTCTGCAATCATCCATCTCCACACATTTAGCCTTGGA
CTATTACGACTCGGCCCAGGACCGGTGGTGCCCCAACACGGCGCTGTTCG
TGGAGAAGGTGGGCATGCATCCCGAGCGCATCCACAACCTGTACTTCGCC
TACCTGTTCCTGCTGCGCGCCATCAACATGGCCGGACCCGAGCTTCAGGC
CTACGACTACGACACGGGGAACCCCGAGGATGATGAATGGGTACGCGGTG
CAGTCCGGGGCCTGGTGCGTGCTTCTTCCAACGCCACCACAGCTGAGCAG
TGCCACCGCGCATTTGACGAGAGCGGCATGTTCCAGCCGCGCGGGCTGGC
GGGCGGATCCGACGCGGTAGCAGCAGAGGAAGCCGAGCTGCACAAGCTGC
GCCATGATTTTTTCGTGCGCTTCCACAACATCTCACGCATCATGGACTGC
GTCGGGTGCGAGAAATGCCGGCTCTGGGGCAAGCTGCAGGTTCTGGGCCT
GGGCACGGCCATCAAGGTGGTGCTGGGACGGCCCGAGGACCGGACGGCGG
AAGGCCGCCTGTCATTTCAACGCAACGAGGTCATTGCCCTTATCAACACG
GCCCACCAGCTGGCCAAGAGTGTCAAGGCCGTGGACGACTTCCAGAAGCT
GGAGTTCGACGAGATTGTGCAGCGCTGGATGTGGCTGGCCGGCCTGGTGC
TCATTGTCACTGGTGCTTTGCTAGGCCTGCTTCTTCGACGGCAAGGGCCA
AAAAGAAGCAATCGGCATCACGGTGAGTGCGGGAAGGCAACAAATGGAAT
GGATTCCGCTGCGCAAGGCGTGCTACCTATTGATTATGAACGTACGAAGA
AGGCAAATTAGAATGAAGTGATGAGTTTTCGCGCTTTATGTTGGAAAGTT
TTTGAGTGGTGAAGAAAAGGAGAGCGCATATGTGGAGTTCACACTTGATT
GCAAAGTGTGTAGCATTCATTCAAAGCCACACTTAGTCTTTCCCCCCGGC
CCTTGGAAATTCTCGAGTGGACGAGGGTGTACATTTGTATACATTAGATA
ATGAGCGAAGAAAGACCTCACAAAAGGACCAATCAACTAATATAGAAATG
AACAGAAAGTAGGGCGCATGATTTTTCACCGGCCCAGACTTCCATGGATT
TTTCCATGTACTGTTATATATTTTGGGGACAAAGGTCCGAAATACTTGCT
TCCCGGAAAAATTAA back to topCoding sequence (CDS) from alignment at scaffold_5:605181..607545- >mRNA_2541 ID=mRNA_2541|Name=jgi.p|Nanoce1779_2|331628|organism=Nannochloropsis oceanica|type=CDS|length=3174bp|location=Sequence derived from alignment at scaffold_5:605181..607545- (Nannochloropsis oceanica)
GGCGGGAAGCGTTTCACACACCTACCAATGCTGGATTTCTTCCGTGCCCG
TGTTTGCCAGACTTGCGACCTAGACGGGTTTGTGGGGGACTGCGGCTGCG
AGTTTGACACGGTTAACAAAGCCACGCGTCAGTACTTTTTTCCGCTGTTG
GGGGATCTGGCACAGCGCACCTTCTTTCGGTACTTCAAAGTGAACCTGAG
CAAGGCCTGCCCCTTTTGGCACGAGGAGATGATATGCTCCATCCGGGACT
GCGCCGTGCTGGAGTGCGAAGCCCATGAGGTCCCGCCCGTCTGGATCGAG
CGAGATGCCGAAGGCCGGGCGATACGGGAATGTCTCGGGGACTCCACGAC
GGCCTTAAGCGAGATGGAAAAGCTTCTGGGCACGGTGGACCGCAAGGAGG
CCAAGGCGGGTGTCGATGCCTTCGCGGGCTGGGCGGAGGGGGACAACGCC
AAAGTTTGGATCGAGCAGGAGGAGGATGACCAGGGTATGAATTACATCAA
CCTCCTGCGCAACATCGAGCGCTTCACGGGCTATGCAGGGCCCTCGGCTC
GTCGAGTCTGGCGCTCTATTTACGAGAATTGCTTCGAGCTGTCCCCTATG
GAGCTGCACGCGGGCGGGCACTGCCTGGAGAAGCGCGTCTTCTACCGCCT
GATCGCCGGTCTGCAATCATCCATCTCCACACATTTAGCCTTGGACTATT
ACGACTCGGCCCAGGACCGGTGGTGCCCCAACACGGCGCTGTTCGTGGAG
AAGGTGGGCATGCATCCCGAGCGCATCCACAACCTGTACTTCGCCTACCT
GTTCCTGCTGCGCGCCATCAACATGGCCGGACCCGAGCTTCAGGCCTACG
ACTACGACACGGGGAACCCCGAGGATGATGAATGGGTACGCGGTGCAGTC
CGGGGCCTGGTGCGTGCTTCTTCCAACGCCACCACAGCTGAGCAGTGCCA
CCGCGCATTTGACGAGAGCGGCATGTTCCAGCCGCGCGGGCTGGCGGGCG
GATCCGACGCGGTAGCAGCAGAGGAAGCCGAGCTGCACAAGCTGCGCCAT
GATTTTTTCGTGCGCTTCCACAACATCTCACGCATCATGGACTGCGTCGG
GTGCGAGAAATGCCGGCTCTGGGGCAAGCTGCAGGTTCTGGGCCTGGGCA
CGGCCATCAAGGTGGTGCTGGGACGGCCCGAGGACCGGACGGCGGAAGGC
CGCCTGTCATTTCAACGCAACGAGGTCATTGCCCTTATCAACACGGCCCA
CCAGCTGGCCAAGAGTGTCAAGGCCGTGGACGACTTCCAGAAGCTGGAGT
TCGACGAGATTGTGCAGCGCTGGATGTGGCTGGCCGGCCTGGTGCTCATT
GTCACTGGTGCTTTGCTAGGCCTGCTTCTTCGACGGCAAGGGCCAAAAAG
AAGCAATCGGCATCACGGTGAGTGCGGGAAGGCAACAAATGGAATGGATT
CCGCTGCGCAAGGCGTGCTACCTATTGATTATGAACGTACGAAGAAGGCA
AATTAGATGTGGTGGCTCGTAAAGCCTAGGCTGCTCGTATTCTGCGGCGT
CGTCCTCCTGATCGGCCAGCTATGCGCTCAGACAGAGGGCGGGAAGCGTT
TCACACACCTACCAATGCTGGATTTCTTCCGTGCCCGTGTTTGCCAGACT
TGCGACCTAGACGGGTTTGTGGGGGACTGCGGCTGCGAGTTTGACACGGT
TAACAAAGCCACGCGTCAGTACTTTTTTCCGCTGTTGGGGGATCTGGCAC
AGCGCACCTTCTTTCGGTACTTCAAAGTGAACCTGAGCAAGGCCTGCCCC
TTTTGGCACGAGGAGATGATATGCTCCATCCGGGACTGCGCCGTGCTGGA
GTGCGAAGCCCATGAGGTCCCGCCCGTCTGGATCGAGCGAGATGCCGAAG
GCCGGGCGATACGGGAATGTCTCGGGGACTCCACGACGGCCTTAAGCGAG
ATGGAAAAGCTTCTGGGCACGGTGGACCGCAAGGAGGCCAAGGCGGGTGT
CGATGCCTTCGCGGGCTGGGCGGAGGGGGACAACGCCAAAGTTTGGATCG
AGCAGGAGGAGGATGACCAGGGTATGAATTACATCAACCTCCTGCGCAAC
ATCGAGCGCTTCACGGGCTATGCAGGGCCCTCGGCTCGTCGAGTCTGGCG
CTCTATTTACGAGAATTGCTTCGAGCTGTCCCCTATGGAGCTGCACGCGG
GCGGGCACTGCCTGGAGAAGCGCGTCTTCTACCGCCTGATCGCCGGTCTG
CAATCATCCATCTCCACACATTTAGCCTTGGACTATTACGACTCGGCCCA
GGACCGGTGGTGCCCCAACACGGCGCTGTTCGTGGAGAAGGTGGGCATGC
ATCCCGAGCGCATCCACAACCTGTACTTCGCCTACCTGTTCCTGCTGCGC
GCCATCAACATGGCCGGACCCGAGCTTCAGGCCTACGACTACGACACGGG
GAACCCCGAGGATGATGAATGGGTACGCGGTGCAGTCCGGGGCCTGGTGC
GTGCTTCTTCCAACGCCACCACAGCTGAGCAGTGCCACCGCGCATTTGAC
GAGAGCGGCATGTTCCAGCCGCGCGGGCTGGCGGGCGGATCCGACGCGGT
AGCAGCAGAGGAAGCCGAGCTGCACAAGCTGCGCCATGATTTTTTCGTGC
GCTTCCACAACATCTCACGCATCATGGACTGCGTCGGGTGCGAGAAATGC
CGGCTCTGGGGCAAGCTGCAGGTTCTGGGCCTGGGCACGGCCATCAAGGT
GGTGCTGGGACGGCCCGAGGACCGGACGGCGGAAGGCCGCCTGTCATTTC
AACGCAACGAGGTCATTGCCCTTATCAACACGGCCCACCAGCTGGCCAAG
AGTGTCAAGGCCGTGGACGACTTCCAGAAGCTGGAGTTCGACGAGATTGT
GCAGCGCTGGATGTGGCTGGCCGGCCTGGTGCTCATTGTCACTGGTGCTT
TGCTAGGCCTGCTTCTTCGACGGCAAGGGCCAAAAAGAAGCAATCGGCAT
CACGGTGAGTGCGGGAAGGCAACAAATGGAATGGATTCCGCTGCGCAAGG
CGTGCTACCTATTGATTATGAACGTACGAAGAAGGCAAATTAGATGTGGT
GGCTCGTAAAGCCTAGGCTGCTCGTATTCTGCGGCGTCGTCCTCCTGATC
GGCCAGCTATGCGCTCAGACAGAG back to top
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