jgi.p|Nanoce1779_2|580719, mRNA_2540 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580719
Unique NamemRNA_2540
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1404
Alignment locationscaffold_5:604435..605838 +

Link to JBrowse

Properties
Property NameValue
TranscriptId580805
TrackFilteredModels2
ProteinId580719
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:604435..605838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580719gene_2540Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580719mRNA_2540-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2540CDS_2540Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2540 ID=mRNA_2540|Name=jgi.p|Nanoce1779_2|580719|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp
CAGATTTTGTCTGGGGCTCCACGTCGATTCCCCCGGCCTCAGCATTTTCT
TCTACACAAAAGCAACAAATGGCAACCACCACGTCCACGTCCCCCATCGT
CCTGGCAGACACCAGCCTGCCGGAGTACCATGCCTTCCCGCCCTTTTTTA
CACTTCAGCCCGTCGTGGAAACTCGGAAGATCCAGCTTCGGCTATGGCGG
GAGCTGGTGCTACGGTGGCATCAAGCCCGGGGCATACAAAACCTAAACCT
TAACGAGTGGCCGCTCTTTGCCAACCCTATCATCAATCGTACCTTATCCT
TGAAGGCACGCCAGGAGGTGGTGCAGGGCATGGTGGCGAGCGGGCACGCA
GAATGGAAAGACGAGTATAAGACCACGGCCTTTGTCATGTGGCGGTCCCC
GCAAGAAATTGCAGCCTCCGTCCTGGACTTTGTGCGGAGAAATGGAATGG
CTGGCAATGTGTACACGGTATATGATTTGTACTCTGGAGATGAGATAACT
GCGGGCGCAGATTTTCATGGCACGGACCCTACCATTTTTCGACGTGCCCT
GGAATTATTAGAGCAGCAAGGCAAGGCAGCCTTGTTCAAAGGAGCGTCGT
CGGAAGAAGATGGCATTAAGTTTGTCGCGGATGCCTAGGCAACATTTTGG
GAGTGAGAATAACATAACATTTAAGTGTGAAAATACCAACGGTGATTTCG
ATTGCAAAAGTATGGAAGAAATAAAGTACTTGAGGAAAGTCTTTTTTTAA
TTTTTCCGGGAAGCAAGTATTTCGGACCTTTGTCCCCAAAATATATAACA
GTACATGGAAAAATCCATGGAAGTCTGGGCCGGTGAAAAATCATGCGCCC
TACTTTCTGTTCATTTCTATATTAGTTGATTGGTCCTTTTGTGAGGTCTT
TCTTCGCTCATTATCTAATGTATACAAATGTACACCCTCGTCCACTCGAG
AATTTCCAAGGGCCGGGGGGAAAGACTAAGTGTGGCTTTGAATGAATGCT
ACACACTTTGCAATCAAGTGTGAACTCCACATATGCGCTCTCCTTTTCTT
CACCACTCAAAAACTTTCCAACATAAAGCGCGAAAACTCATCACTTCATT
CTAATTTGCCTTCTTCGTACGTTCATAATCAATAGGTAGCACGCCTTGCG
CAGCGGAATCCATTCCATTTGTTGCCTTCCCGCACTCACCGTGATGCCGA
TTGCTTCTTTTTGGCCCTTGCCGTCGAAGAAGCAGGCCTAGCAAAGCACC
AGTGACAATGAGCACCAGGCCGGCCAGCCACATCCAGCGCTGCACAATCT
CGTCGAACTCCAGCTTCTGGAAGTCGTCCACGGCCTTGACACTCTTGGCC
AGCTGGTGGGCCGTGTTGATAAGGGCAATGACCTCGTTGCGTTGAAATGA
CAGG
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protein sequence of jgi.p|Nanoce1779_2|580719

>mRNA_2540-protein ID=mRNA_2540-protein|Name=jgi.p|Nanoce1779_2|580719|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MATTTSTSPIVLADTSLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRW
HQARGIQNLNLNEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEY
KTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFH
GTDPTIFRRALELLEQQGKAALFKGASSEEDGIKFVADA*
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mRNA from alignment at scaffold_5:604435..605838+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2540 ID=mRNA_2540|Name=jgi.p|Nanoce1779_2|580719|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp|location=Sequence derived from alignment at scaffold_5:604435..605838+ (Nannochloropsis oceanica)
CAGATTTTGTCTGGGGCTCCACGTCGATTCCCCCGGCCTCAGCATTTTCT
TCTACACAAAAGCAACAAATGGCAACCACCACGTCCACGTCCCCCATCGT
CCTGGCAGACACCAGCCTGCCGGAGTACCATGCCTTCCCGCCCTTTTTTA
CACTTCAGCCCGTCGTGGAAACTCGGAAGATCCAGCTTCGGCTATGGCGG
GAGCTGGTGCTACGGTGGCATCAAGCCCGGGGCATACAAAACCTAAACCT
TAACGAGTGGCCGCTCTTTGCCAACCCTATCATCAATCGTACCTTATCCT
TGAAGGCACGCCAGGAGGTGGTGCAGGGCATGGTGGCGAGCGGGCACGCA
GAATGGAAAGACGAGTATAAGACCACGGCCTTTGTCATGTGGCGGTCCCC
GCAAGAAATTGCAGCCTCCGTCCTGGACTTTGTGCGGAGAAATGGAATGG
CTGGCAATGTGTACACGGTATATGATTTGTACTCTGGAGATGAGATAACT
GCGGGCGCAGATTTTCATGGCACGGACCCTACCATTTTTCGACGTGCCCT
GGAATTATTAGAGCAGCAAGGCAAGGCAGCCTTGTTCAAAGGAGCGTCGT
CGGAAGAAGATGGCATTAAGTTTGTCGCGGATGCCTAGGCAACATTTTGG
GAGTGAGAATAACATAACATTTAAGTGTGAAAATACCAACGGTGATTTCG
ATTGCAAAAGTATGGAAGAAATAAAGTACTTGAGGAAAGTCTTTTTTTAA
TTTTTCCGGGAAGCAAGTATTTCGGACCTTTGTCCCCAAAATATATAACA
GTACATGGAAAAATCCATGGAAGTCTGGGCCGGTGAAAAATCATGCGCCC
TACTTTCTGTTCATTTCTATATTAGTTGATTGGTCCTTTTGTGAGGTCTT
TCTTCGCTCATTATCTAATGTATACAAATGTACACCCTCGTCCACTCGAG
AATTTCCAAGGGCCGGGGGGAAAGACTAAGTGTGGCTTTGAATGAATGCT
ACACACTTTGCAATCAAGTGTGAACTCCACATATGCGCTCTCCTTTTCTT
CACCACTCAAAAACTTTCCAACATAAAGCGCGAAAACTCATCACTTCATT
CTAATTTGCCTTCTTCGTACGTTCATAATCAATAGGTAGCACGCCTTGCG
CAGCGGAATCCATTCCATTTGTTGCCTTCCCGCACTCACCGTGATGCCGA
TTGCTTCTTTTTGGCCCTTGCCGTCGAAGAAGCAGGCCTAGCAAAGCACC
AGTGACAATGAGCACCAGGCCGGCCAGCCACATCCAGCGCTGCACAATCT
CGTCGAACTCCAGCTTCTGGAAGTCGTCCACGGCCTTGACACTCTTGGCC
AGCTGGTGGGCCGTGTTGATAAGGGCAATGACCTCGTTGCGTTGAAATGA
CAGG
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Coding sequence (CDS) from alignment at scaffold_5:604435..605838+

>mRNA_2540 ID=mRNA_2540|Name=jgi.p|Nanoce1779_2|580719|organism=Nannochloropsis oceanica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_5:604435..605838+ (Nannochloropsis oceanica)
ATGGCAACCACCACGTCCACGTCCCCCATCGTCCTGGCAGACACCAGCCT
GCCGGAGTACCATGCCTTCCCGCCCTTTTTTACACTTCAGCCCGTCGTGG
AAACTCGGAAGATCCAGCTTCGGCTATGGCGGGAGCTGGTGCTACGGTGG
CATCAAGCCCGGGGCATACAAAACCTAAACCTTAACGAGTGGCCGCTCTT
TGCCAACCCTATCATCAATCGTACCTTATCCTTGAAGGCACGCCAGGAGG
TGGTGCAGGGCATGGTGGCGAGCGGGCACGCAGAATGGAAAGACGAGTAT
AAGACCACGGCCTTTGTCATGTGGCGGTCCCCGCAAGAAATTGCAGCCTC
CGTCCTGGACTTTGTGCGGAGAAATGGAATGGCTGGCAATGTGTACACGG
TATATGATTTGTACTCTGGAGATGAGATAACTGCGGGCGCAGATTTTCAT
GGCACGGACCCTACCATTTTTCGACGTGCCCTGGAATTATTAGAGCAGCA
AGGCAAGGCAGCCTTGTTCAAAGGAGCGTCGTCGGAAGAAGATGGCATTA
AGTTTGTCGCGGATGCCTAG
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Synonyms
Publications