jgi.p|Nanoce1779_2|580710, mRNA_2538 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580710
Unique NamemRNA_2538
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1511
Alignment locationscaffold_5:598693..600320 -

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Properties
Property NameValue
TranscriptId580796
TrackFilteredModels2
ProteinId580710
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:598693..600320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580710gene_2538Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580710mRNA_2538-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2538CDS_2538Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2538 ID=mRNA_2538|Name=jgi.p|Nanoce1779_2|580710|organism=Nannochloropsis oceanica|type=mRNA|length=1511bp
ACAGCTCGTACATCGCTAACAAATCCTTCCCATCATCAGGGAGGATGCCT
CCAAAGAGGGCCTCCACGATAAAAATCGCGGCCAAGGAAGAGGCAGCGAA
GGAACAGGAAAAACGGATGGTTGAGCGGATGAAGGCATTGACGAAGGGCC
TGGAGAATGCACTTTTAGAAAAGAGTGAAGACGCCATGGACATCGACGAA
GACGAGGAGGAAGACAGGACGCCCCGCCCCAGCACCGCCCGTGCCGGCGC
CCGCTCCCGCACCGCCAGCAGCACGACTAGTACATCAAGCAGGATAAGAA
GCAACAGAAGTAGCTGCGGGAGTGGCAGTGGTAGCAAGAGCGGCATGAAA
CCGAGCACCTTAGTCAAGCGGAAGAGTACATCGCCAGTCGAGCGATTGAC
CAAGAAGCAGGCCATCGAAGAGGCAGCCCAGATCCTCCGAGTCCGCAGCA
GCAATTACTCTCCCTCCGCTACCACAAATGCCTCCGGTACTACGAAGTTT
CAACGGACCATGACGACGTCCCATCCTTCCATGACTTTTCGAGGCCGTGG
TATCCCTTCGCGACGGCATGCCCTATCCCGGCCTGTGATGACGACCGACG
AGAAGGCGGAAACAGAGGAGGACGAAGAAGACAATGATGTGGTCATGCCT
CCTGCTCGCCAAAATACCCGACGACTCGTTCAAGTATCGGCGCCGGCGCC
GATAAGAGCAACCCATGCTCCTCTTGTGCCCCTGCTGTCCGTCCGCACGA
GCGGAGGCCCGTCACGTCGTTCGTACGATAAGGGCGAGGAAGTGGGGGGA
AAACAGTCCATTGGTACACTGGGTCATTTGGGCCACGGCCTGTTCAAGCT
CCTAACGTACGCCATCATCATTTTGAGCTCTGTATTTGCCCTCCATGTGG
GGGTCGAAACATATAAACTCTACACGCCGTTGTGCTTCTCCGACTCCTTT
AGCAACGGACAGGTCATGACGGGACGTCCTCCGAATGCGGGGGCATGTAA
AACCACGTGGTGTTGCCCCCCATTACTCCATTGCCATGCTGGTCGCATCG
CGGGCGTCGTGGCTCTGGAGAAAGTCGCCAACGCCTTTGGCTACACCAGC
ATCACAAGCACCACCAGCAGCCCTGTGCCTATGGAAGTTGCCGGGGGGAG
GAGGGAGTATTCGATGAAGGAACCGGAAAAGCCCGAAGAGGCATGGGAAG
ATGAGGGGGGGGACGATGGATATTCGGAGGAGATGGAGGACAAGGATCAT
TGGGCAGAGCAGGAGGCGATGGGAGATACCCACGAGCATGCGGAGGAGCA
CAACGATCTTGAGTACTCGCAAGAGACGGAGCACGGGCAGTGAAGAGGAG
TATACACCCACCCAGTAAGGATACATGTCAGACTATCAAAGCATAGTAGT
ATATTATTTATTTTATCTTATTTCAAAATGGCATCGGCCAACTCCACGGG
AACAATAGATACATACAATGAGCACTAAGAAGAGTGGCAAATGCATTTTG
AGGAGAAACGC
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protein sequence of jgi.p|Nanoce1779_2|580710

>mRNA_2538-protein ID=mRNA_2538-protein|Name=jgi.p|Nanoce1779_2|580710|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MPPKRASTIKIAAKEEAAKEQEKRMVERMKALTKGLENALLEKSEDAMDI
DEDEEEDRTPRPSTARAGARSRTASSTTSTSSRIRSNRSSCGSGSGSKSG
MKPSTLVKRKSTSPVERLTKKQAIEEAAQILRVRSSNYSPSATTNASGTT
KFQRTMTTSHPSMTFRGRGIPSRRHALSRPVMTTDEKAETEEDEEDNDVV
MPPARQNTRRLVQVSAPAPIRATHAPLVPLLSVRTSGGPSRRSYDKGEEV
GGKQSIGTLGHLGHGLFKLLTYAIIILSSVFALHVGVETYKLYTPLCFSD
SFSNGQVMTGRPPNAGACKTTWCCPPLLHCHAGRIAGVVALEKVANAFGY
TSITSTTSSPVPMEVAGGRREYSMKEPEKPEEAWEDEGGDDGYSEEMEDK
DHWAEQEAMGDTHEHAEEHNDLEYSQETEHGQ*
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mRNA from alignment at scaffold_5:598693..600320-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2538 ID=mRNA_2538|Name=jgi.p|Nanoce1779_2|580710|organism=Nannochloropsis oceanica|type=mRNA|length=1628bp|location=Sequence derived from alignment at scaffold_5:598693..600320- (Nannochloropsis oceanica)
ACAGCTCGTACATCGCTAACAAATCCTTCCCATCATCAGGGAGGATGCCT
CCAAAGGTACGTGAGCTGAGTACATGGATATACGTGTGGCCAATCTTTTT
GCAAGGAGTAAAACCTTGGCACCTTAAGTGATGATGATTACCTAATTGCT
CGTTCCTGATCCCTACACGTTAGAGGGCCTCCACGATAAAAATCGCGGCC
AAGGAAGAGGCAGCGAAGGAACAGGAAAAACGGATGGTTGAGCGGATGAA
GGCATTGACGAAGGGCCTGGAGAATGCACTTTTAGAAAAGAGTGAAGACG
CCATGGACATCGACGAAGACGAGGAGGAAGACAGGACGCCCCGCCCCAGC
ACCGCCCGTGCCGGCGCCCGCTCCCGCACCGCCAGCAGCACGACTAGTAC
ATCAAGCAGGATAAGAAGCAACAGAAGTAGCTGCGGGAGTGGCAGTGGTA
GCAAGAGCGGCATGAAACCGAGCACCTTAGTCAAGCGGAAGAGTACATCG
CCAGTCGAGCGATTGACCAAGAAGCAGGCCATCGAAGAGGCAGCCCAGAT
CCTCCGAGTCCGCAGCAGCAATTACTCTCCCTCCGCTACCACAAATGCCT
CCGGTACTACGAAGTTTCAACGGACCATGACGACGTCCCATCCTTCCATG
ACTTTTCGAGGCCGTGGTATCCCTTCGCGACGGCATGCCCTATCCCGGCC
TGTGATGACGACCGACGAGAAGGCGGAAACAGAGGAGGACGAAGAAGACA
ATGATGTGGTCATGCCTCCTGCTCGCCAAAATACCCGACGACTCGTTCAA
GTATCGGCGCCGGCGCCGATAAGAGCAACCCATGCTCCTCTTGTGCCCCT
GCTGTCCGTCCGCACGAGCGGAGGCCCGTCACGTCGTTCGTACGATAAGG
GCGAGGAAGTGGGGGGAAAACAGTCCATTGGTACACTGGGTCATTTGGGC
CACGGCCTGTTCAAGCTCCTAACGTACGCCATCATCATTTTGAGCTCTGT
ATTTGCCCTCCATGTGGGGGTCGAAACATATAAACTCTACACGCCGTTGT
GCTTCTCCGACTCCTTTAGCAACGGACAGGTCATGACGGGACGTCCTCCG
AATGCGGGGGCATGTAAAACCACGTGGTGTTGCCCCCCATTACTCCATTG
CCATGCTGGTCGCATCGCGGGCGTCGTGGCTCTGGAGAAAGTCGCCAACG
CCTTTGGCTACACCAGCATCACAAGCACCACCAGCAGCCCTGTGCCTATG
GAAGTTGCCGGGGGGAGGAGGGAGTATTCGATGAAGGAACCGGAAAAGCC
CGAAGAGGCATGGGAAGATGAGGGGGGGGACGATGGATATTCGGAGGAGA
TGGAGGACAAGGATCATTGGGCAGAGCAGGAGGCGATGGGAGATACCCAC
GAGCATGCGGAGGAGCACAACGATCTTGAGTACTCGCAAGAGACGGAGCA
CGGGCAGTGAAGAGGAGTATACACCCACCCAGTAAGGATACATGTCAGAC
TATCAAAGCATAGTAGTATATTATTTATTTTATCTTATTTCAAAATGGCA
TCGGCCAACTCCACGGGAACAATAGATACATACAATGAGCACTAAGAAGA
GTGGCAAATGCATTTTGAGGAGAAACGC
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Coding sequence (CDS) from alignment at scaffold_5:598693..600320-

>mRNA_2538 ID=mRNA_2538|Name=jgi.p|Nanoce1779_2|580710|organism=Nannochloropsis oceanica|type=CDS|length=2598bp|location=Sequence derived from alignment at scaffold_5:598693..600320- (Nannochloropsis oceanica)
AGGGCCTCCACGATAAAAATCGCGGCCAAGGAAGAGGCAGCGAAGGAACA
GGAAAAACGGATGGTTGAGCGGATGAAGGCATTGACGAAGGGCCTGGAGA
ATGCACTTTTAGAAAAGAGTGAAGACGCCATGGACATCGACGAAGACGAG
GAGGAAGACAGGACGCCCCGCCCCAGCACCGCCCGTGCCGGCGCCCGCTC
CCGCACCGCCAGCAGCACGACTAGTACATCAAGCAGGATAAGAAGCAACA
GAAGTAGCTGCGGGAGTGGCAGTGGTAGCAAGAGCGGCATGAAACCGAGC
ACCTTAGTCAAGCGGAAGAGTACATCGCCAGTCGAGCGATTGACCAAGAA
GCAGGCCATCGAAGAGGCAGCCCAGATCCTCCGAGTCCGCAGCAGCAATT
ACTCTCCCTCCGCTACCACAAATGCCTCCGGTACTACGAAGTTTCAACGG
ACCATGACGACGTCCCATCCTTCCATGACTTTTCGAGGCCGTGGTATCCC
TTCGCGACGGCATGCCCTATCCCGGCCTGTGATGACGACCGACGAGAAGG
CGGAAACAGAGGAGGACGAAGAAGACAATGATGTGGTCATGCCTCCTGCT
CGCCAAAATACCCGACGACTCGTTCAAGTATCGGCGCCGGCGCCGATAAG
AGCAACCCATGCTCCTCTTGTGCCCCTGCTGTCCGTCCGCACGAGCGGAG
GCCCGTCACGTCGTTCGTACGATAAGGGCGAGGAAGTGGGGGGAAAACAG
TCCATTGGTACACTGGGTCATTTGGGCCACGGCCTGTTCAAGCTCCTAAC
GTACGCCATCATCATTTTGAGCTCTGTATTTGCCCTCCATGTGGGGGTCG
AAACATATAAACTCTACACGCCGTTGTGCTTCTCCGACTCCTTTAGCAAC
GGACAGGTCATGACGGGACGTCCTCCGAATGCGGGGGCATGTAAAACCAC
GTGGTGTTGCCCCCCATTACTCCATTGCCATGCTGGTCGCATCGCGGGCG
TCGTGGCTCTGGAGAAAGTCGCCAACGCCTTTGGCTACACCAGCATCACA
AGCACCACCAGCAGCCCTGTGCCTATGGAAGTTGCCGGGGGGAGGAGGGA
GTATTCGATGAAGGAACCGGAAAAGCCCGAAGAGGCATGGGAAGATGAGG
GGGGGGACGATGGATATTCGGAGGAGATGGAGGACAAGGATCATTGGGCA
GAGCAGGAGGCGATGGGAGATACCCACGAGCATGCGGAGGAGCACAACGA
TCTTGAGTACTCGCAAGAGACGGAGCACGGGCAGTGAATGCCTCCAAAGA
GGGCCTCCACGATAAAAATCGCGGCCAAGGAAGAGGCAGCGAAGGAACAG
GAAAAACGGATGGTTGAGCGGATGAAGGCATTGACGAAGGGCCTGGAGAA
TGCACTTTTAGAAAAGAGTGAAGACGCCATGGACATCGACGAAGACGAGG
AGGAAGACAGGACGCCCCGCCCCAGCACCGCCCGTGCCGGCGCCCGCTCC
CGCACCGCCAGCAGCACGACTAGTACATCAAGCAGGATAAGAAGCAACAG
AAGTAGCTGCGGGAGTGGCAGTGGTAGCAAGAGCGGCATGAAACCGAGCA
CCTTAGTCAAGCGGAAGAGTACATCGCCAGTCGAGCGATTGACCAAGAAG
CAGGCCATCGAAGAGGCAGCCCAGATCCTCCGAGTCCGCAGCAGCAATTA
CTCTCCCTCCGCTACCACAAATGCCTCCGGTACTACGAAGTTTCAACGGA
CCATGACGACGTCCCATCCTTCCATGACTTTTCGAGGCCGTGGTATCCCT
TCGCGACGGCATGCCCTATCCCGGCCTGTGATGACGACCGACGAGAAGGC
GGAAACAGAGGAGGACGAAGAAGACAATGATGTGGTCATGCCTCCTGCTC
GCCAAAATACCCGACGACTCGTTCAAGTATCGGCGCCGGCGCCGATAAGA
GCAACCCATGCTCCTCTTGTGCCCCTGCTGTCCGTCCGCACGAGCGGAGG
CCCGTCACGTCGTTCGTACGATAAGGGCGAGGAAGTGGGGGGAAAACAGT
CCATTGGTACACTGGGTCATTTGGGCCACGGCCTGTTCAAGCTCCTAACG
TACGCCATCATCATTTTGAGCTCTGTATTTGCCCTCCATGTGGGGGTCGA
AACATATAAACTCTACACGCCGTTGTGCTTCTCCGACTCCTTTAGCAACG
GACAGGTCATGACGGGACGTCCTCCGAATGCGGGGGCATGTAAAACCACG
TGGTGTTGCCCCCCATTACTCCATTGCCATGCTGGTCGCATCGCGGGCGT
CGTGGCTCTGGAGAAAGTCGCCAACGCCTTTGGCTACACCAGCATCACAA
GCACCACCAGCAGCCCTGTGCCTATGGAAGTTGCCGGGGGGAGGAGGGAG
TATTCGATGAAGGAACCGGAAAAGCCCGAAGAGGCATGGGAAGATGAGGG
GGGGGACGATGGATATTCGGAGGAGATGGAGGACAAGGATCATTGGGCAG
AGCAGGAGGCGATGGGAGATACCCACGAGCATGCGGAGGAGCACAACGAT
CTTGAGTACTCGCAAGAGACGGAGCACGGGCAGTGAATGCCTCCAAAG
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Synonyms
Publications