jgi.p|Nanoce1779_2|637450, mRNA_2536 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|637450
Unique Name	mRNA_2536
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2730
Alignment location	scaffold_5:592521..595250 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	637536
Track	FilteredModels2
ProteinId	637450

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:592521..595250 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637450	gene_2536	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637450	mRNA_2536-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2536	CDS_2536	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:592521..595250+
coding sequence from alignment at scaffold_5:592521..595250+

mRNA sequence

>mRNA_2536 ID=mRNA_2536|Name=jgi.p|Nanoce1779_2|637450|organism=Nannochloropsis oceanica|type=mRNA|length=2730bp
ATGGTCCCCAAGGACCCTGACGCGCTTTTGGAGGGTTGGCTGAAGAAGCG
AGGCACACGGATTCCTGGGCACTGGTCCGAGCGGTACTTTGTATTAAAGG
AGGACCGCTTGATGTATTACCTCAAGCCCAGCGACTCGGTGGCCCGGGGC
ACTTACGTCCTGGACCGGACATGCGTTGTCTCTGAGGTGAAACCCTTTTC
TATGTCCTACGACAAGAAGAAAGCCTTGCATGCATTTCGTATCGTTTGGC
CCGAGGCTGCAGAGATCATGGAGGCCCCCCCAGTGGCGGCGGTGGGTGCG
GGCGAGAGCAGCACCACCAAGAGCAGCAACACGAGCACTGCCACCACCAG
CCGCAAGGATGGTGAGTCGAAACGACATTCAGCTCGATTTGCCGGTCCAT
TGCCCGCATATTCAGGCTCGAATGAGACTTTATCATCGTCCAGGACCAAC
GCCACCTGTAATGCCGACCCGGAAGGATCTCAGGTAGTGGGCGTAAGCAT
GGACCCTTACGTCATGTCCTCGTACCGAGACCCCGCCCACCAACAGAAGC
AGCAGCAGGCTATAACCAGAATCGTCTATAGTGTCTGTTGCTTGTCGGAA
GGTCGTAGTAATGTGCGTCGCTTGGGAAGCCAGGGCTCGACCTCCTTTTC
TGGAGGCGGGGGAAGCCAACGTGGAGAAGGCAGCAGCGGCAGCAGCAGCA
GCAGCGGCCCCGTGACGTTTGCTTCGAGCGGGGCCATGGTCGCAATGGCA
GTGGGTGGGGTGGTCGTAGGGGCAATGACTGCAGGTTTAGGCCTTGTTGC
GCCCATGGTGATTGTCGGTCTCACAGCAGCTACAGGGTCGGGGGCAGCTG
TCTACGGAGCTGCATCCTCCTCGTCTCATGGAGGACTCAAGACGAAGCAG
GTAGCGCTGGTGTTGGCATTGGACAGCAAGGAAAGCGCAGAGGAATGGCG
CACGACGATTGAAGCTCGAATTCGGATGAGCCAGCGTTTCCCTCAGCTAA
GATGGATGTCCATGGTGGGCTTAGATAGACGGAAGCCCCATTCGCTCAGC
ATGGGGACCACCAGCAGCAGGAGCAGCAGCTGCAAGCAGCGGAGTGTACC
ATGCATTACGAAAAGATTGGAGAACGTAGATCGGTGGACAAGGGTGACGC
GCTGGCGTCCGTGGGGGGTGGATAATGGGATTCGGGTCTATGAGCTTGAT
CACGTCACTATCCAGACAGGTGTTGTCCAGCGATGGCCCACTTCAGTTTC
GACGGCTGCTTCGGAAGGTGGCTGCAGCATTTACAGTGAGAATGGAATTA
GAACATGGGGGCGGGCAACCAAGGCACCATTGCCTTGTCGGAAGGTGCAG
GTGACAGTGCGAGGGACGCCGTTAGAGACCTTCATTGCCTTGATCTCTGT
CCCTTACCGGATCCTGAACGGTGTGGTAGAGAGTGTACGGAACCTGGAAA
GACTAGATGACCAATCAGACGTAATTCATTTGACGTTCAAACCCTTATTC
TTGTGGCCGACCAGGACGGCGCCCCGAGACTTTTGTTTGCTTCGGTCCTG
GCGGTATGACGAGGATGGTACATACATCATTTGCTACGATTCCACCACAC
ACCGGGCGTGCCCTCCTTTGCCGGGGTATGTGCGTGGGGCCATGCATGCC
GTCTACACCATCAGCCCGAGGCGGCATTCGCGAGGGGGGGGCGGGGCTGT
GGAGTTAAATGAGGCCCCCGAGTGCCTGCTCACACATATCCTGCAGGTAG
ACCCGAAGGGGTGGGTGTGGCACCAACTAGGCTATTTAGATGCATTTGTC
ACGGAGATGCTGTGTCAGGTGCTTGATGTGCGGGATCTGCTGGAGACGGA
TCGATTCATGGCCGTGCATGTCGATACCAGCGAGGAAGGTGGGATGGGAG
GGGAGCAGGGCGCGAGGGGGAAGGGGAAAGGGAATGAATTAGGGAAGGGT
GAGCACACAGAAGAGGGTGCGAGCGGGGTTGAAAGTAGCGGCAATGCCGA
GCGGGGAATTGGGACGCTGGTGATGCATCAAGCGACGGTGCCTGCCGAAA
TGTGGGGGGACGTTGATGCGACAAGCTTTGTCGTGCGCGGTCCTAACTAC
TCCGTCAGTAAGCTTAAGGTGCCTTCGGAGCCAGCGGCCTTTCATTTACT
CGCCGTGGATTTGTTTGACCTTCCCGAAGCCCATGAGAATATTGCTGGGC
ATGTGAATAATCGTGTGCAGGTCGCGGTGGCGGCGGGGGATTGCCCACCA
TTTGTGTTTGTGGTGCAATTGCAGATTCCGGGGGTGGATCAACAGTTGGG
ATATGTCACTTATTTTTCCCCTCCAGACATGGCTTTATTGGAGGAAGACA
CACCGCTCTCTCGCGTGCTCAAGCCTTTTTTCTTCGGCTCGGATGATGGG
TATCGGGATTTGCGCTTCAAGTTGATTCCAAAGATCGTGGAGGGGAACTG
GGTTGTCAGAAAGAGTGTGGGCTCTACACCTGCCATTCTCGGCACGAAAC
TCAAGCAGACGTATCACAGAGGGACAAATTATTTTGAACTAGACATCAAC
ATCGCTTCATCGTCAGTGGCCGCGGGTGTGGTTCGCCTGGCGGCAGGGTA
TGCGAAGACGCTGGTGATTGACTTGGCTTTAGTGGTTCAGGGAGAAACGG
AGGACGAATTACCGGAGCGGGTGGTAGCAGGGTGGCGGATCAATAACATG
GATTTGGCTACGGCGAAGAGGTTGGAGTAG

protein sequence of jgi.p|Nanoce1779_2|637450

>mRNA_2536-protein ID=mRNA_2536-protein|Name=jgi.p|Nanoce1779_2|637450|organism=Nannochloropsis oceanica|type=polypeptide|length=910bp
MVPKDPDALLEGWLKKRGTRIPGHWSERYFVLKEDRLMYYLKPSDSVARG
TYVLDRTCVVSEVKPFSMSYDKKKALHAFRIVWPEAAEIMEAPPVAAVGA
GESSTTKSSNTSTATTSRKDGESKRHSARFAGPLPAYSGSNETLSSSRTN
ATCNADPEGSQVVGVSMDPYVMSSYRDPAHQQKQQQAITRIVYSVCCLSE
GRSNVRRLGSQGSTSFSGGGGSQRGEGSSGSSSSSGPVTFASSGAMVAMA
VGGVVVGAMTAGLGLVAPMVIVGLTAATGSGAAVYGAASSSSHGGLKTKQ
VALVLALDSKESAEEWRTTIEARIRMSQRFPQLRWMSMVGLDRRKPHSLS
MGTTSSRSSSCKQRSVPCITKRLENVDRWTRVTRWRPWGVDNGIRVYELD
HVTIQTGVVQRWPTSVSTAASEGGCSIYSENGIRTWGRATKAPLPCRKVQ
VTVRGTPLETFIALISVPYRILNGVVESVRNLERLDDQSDVIHLTFKPLF
LWPTRTAPRDFCLLRSWRYDEDGTYIICYDSTTHRACPPLPGYVRGAMHA
VYTISPRRHSRGGGGAVELNEAPECLLTHILQVDPKGWVWHQLGYLDAFV
TEMLCQVLDVRDLLETDRFMAVHVDTSEEGGMGGEQGARGKGKGNELGKG
EHTEEGASGVESSGNAERGIGTLVMHQATVPAEMWGDVDATSFVVRGPNY
SVSKLKVPSEPAAFHLLAVDLFDLPEAHENIAGHVNNRVQVAVAAGDCPP
FVFVVQLQIPGVDQQLGYVTYFSPPDMALLEEDTPLSRVLKPFFFGSDDG
YRDLRFKLIPKIVEGNWVVRKSVGSTPAILGTKLKQTYHRGTNYFELDIN
IASSSVAAGVVRLAAGYAKTLVIDLALVVQGETEDELPERVVAGWRINNM
DLATAKRLE*

mRNA from alignment at scaffold_5:592521..595250+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2536 ID=mRNA_2536|Name=jgi.p|Nanoce1779_2|637450|organism=Nannochloropsis oceanica|type=mRNA|length=2730bp|location=Sequence derived from alignment at scaffold_5:592521..595250+ (Nannochloropsis oceanica)
ATGGTCCCCAAGGACCCTGACGCGCTTTTGGAGGGTTGGCTGAAGAAGCG
AGGCACACGGATTCCTGGGCACTGGTCCGAGCGGTACTTTGTATTAAAGG
AGGACCGCTTGATGTATTACCTCAAGCCCAGCGACTCGGTGGCCCGGGGC
ACTTACGTCCTGGACCGGACATGCGTTGTCTCTGAGGTGAAACCCTTTTC
TATGTCCTACGACAAGAAGAAAGCCTTGCATGCATTTCGTATCGTTTGGC
CCGAGGCTGCAGAGATCATGGAGGCCCCCCCAGTGGCGGCGGTGGGTGCG
GGCGAGAGCAGCACCACCAAGAGCAGCAACACGAGCACTGCCACCACCAG
CCGCAAGGATGGTGAGTCGAAACGACATTCAGCTCGATTTGCCGGTCCAT
TGCCCGCATATTCAGGCTCGAATGAGACTTTATCATCGTCCAGGACCAAC
GCCACCTGTAATGCCGACCCGGAAGGATCTCAGGTAGTGGGCGTAAGCAT
GGACCCTTACGTCATGTCCTCGTACCGAGACCCCGCCCACCAACAGAAGC
AGCAGCAGGCTATAACCAGAATCGTCTATAGTGTCTGTTGCTTGTCGGAA
GGTCGTAGTAATGTGCGTCGCTTGGGAAGCCAGGGCTCGACCTCCTTTTC
TGGAGGCGGGGGAAGCCAACGTGGAGAAGGCAGCAGCGGCAGCAGCAGCA
GCAGCGGCCCCGTGACGTTTGCTTCGAGCGGGGCCATGGTCGCAATGGCA
GTGGGTGGGGTGGTCGTAGGGGCAATGACTGCAGGTTTAGGCCTTGTTGC
GCCCATGGTGATTGTCGGTCTCACAGCAGCTACAGGGTCGGGGGCAGCTG
TCTACGGAGCTGCATCCTCCTCGTCTCATGGAGGACTCAAGACGAAGCAG
GTAGCGCTGGTGTTGGCATTGGACAGCAAGGAAAGCGCAGAGGAATGGCG
CACGACGATTGAAGCTCGAATTCGGATGAGCCAGCGTTTCCCTCAGCTAA
GATGGATGTCCATGGTGGGCTTAGATAGACGGAAGCCCCATTCGCTCAGC
ATGGGGACCACCAGCAGCAGGAGCAGCAGCTGCAAGCAGCGGAGTGTACC
ATGCATTACGAAAAGATTGGAGAACGTAGATCGGTGGACAAGGGTGACGC
GCTGGCGTCCGTGGGGGGTGGATAATGGGATTCGGGTCTATGAGCTTGAT
CACGTCACTATCCAGACAGGTGTTGTCCAGCGATGGCCCACTTCAGTTTC
GACGGCTGCTTCGGAAGGTGGCTGCAGCATTTACAGTGAGAATGGAATTA
GAACATGGGGGCGGGCAACCAAGGCACCATTGCCTTGTCGGAAGGTGCAG
GTGACAGTGCGAGGGACGCCGTTAGAGACCTTCATTGCCTTGATCTCTGT
CCCTTACCGGATCCTGAACGGTGTGGTAGAGAGTGTACGGAACCTGGAAA
GACTAGATGACCAATCAGACGTAATTCATTTGACGTTCAAACCCTTATTC
TTGTGGCCGACCAGGACGGCGCCCCGAGACTTTTGTTTGCTTCGGTCCTG
GCGGTATGACGAGGATGGTACATACATCATTTGCTACGATTCCACCACAC
ACCGGGCGTGCCCTCCTTTGCCGGGGTATGTGCGTGGGGCCATGCATGCC
GTCTACACCATCAGCCCGAGGCGGCATTCGCGAGGGGGGGGCGGGGCTGT
GGAGTTAAATGAGGCCCCCGAGTGCCTGCTCACACATATCCTGCAGGTAG
ACCCGAAGGGGTGGGTGTGGCACCAACTAGGCTATTTAGATGCATTTGTC
ACGGAGATGCTGTGTCAGGTGCTTGATGTGCGGGATCTGCTGGAGACGGA
TCGATTCATGGCCGTGCATGTCGATACCAGCGAGGAAGGTGGGATGGGAG
GGGAGCAGGGCGCGAGGGGGAAGGGGAAAGGGAATGAATTAGGGAAGGGT
GAGCACACAGAAGAGGGTGCGAGCGGGGTTGAAAGTAGCGGCAATGCCGA
GCGGGGAATTGGGACGCTGGTGATGCATCAAGCGACGGTGCCTGCCGAAA
TGTGGGGGGACGTTGATGCGACAAGCTTTGTCGTGCGCGGTCCTAACTAC
TCCGTCAGTAAGCTTAAGGTGCCTTCGGAGCCAGCGGCCTTTCATTTACT
CGCCGTGGATTTGTTTGACCTTCCCGAAGCCCATGAGAATATTGCTGGGC
ATGTGAATAATCGTGTGCAGGTCGCGGTGGCGGCGGGGGATTGCCCACCA
TTTGTGTTTGTGGTGCAATTGCAGATTCCGGGGGTGGATCAACAGTTGGG
ATATGTCACTTATTTTTCCCCTCCAGACATGGCTTTATTGGAGGAAGACA
CACCGCTCTCTCGCGTGCTCAAGCCTTTTTTCTTCGGCTCGGATGATGGG
TATCGGGATTTGCGCTTCAAGTTGATTCCAAAGATCGTGGAGGGGAACTG
GGTTGTCAGAAAGAGTGTGGGCTCTACACCTGCCATTCTCGGCACGAAAC
TCAAGCAGACGTATCACAGAGGGACAAATTATTTTGAACTAGACATCAAC
ATCGCTTCATCGTCAGTGGCCGCGGGTGTGGTTCGCCTGGCGGCAGGGTA
TGCGAAGACGCTGGTGATTGACTTGGCTTTAGTGGTTCAGGGAGAAACGG
AGGACGAATTACCGGAGCGGGTGGTAGCAGGGTGGCGGATCAATAACATG
GATTTGGCTACGGCGAAGAGGTTGGAGTAG

Coding sequence (CDS) from alignment at scaffold_5:592521..595250+

>mRNA_2536 ID=mRNA_2536|Name=jgi.p|Nanoce1779_2|637450|organism=Nannochloropsis oceanica|type=CDS|length=2730bp|location=Sequence derived from alignment at scaffold_5:592521..595250+ (Nannochloropsis oceanica)
ATGGTCCCCAAGGACCCTGACGCGCTTTTGGAGGGTTGGCTGAAGAAGCG
AGGCACACGGATTCCTGGGCACTGGTCCGAGCGGTACTTTGTATTAAAGG
AGGACCGCTTGATGTATTACCTCAAGCCCAGCGACTCGGTGGCCCGGGGC
ACTTACGTCCTGGACCGGACATGCGTTGTCTCTGAGGTGAAACCCTTTTC
TATGTCCTACGACAAGAAGAAAGCCTTGCATGCATTTCGTATCGTTTGGC
CCGAGGCTGCAGAGATCATGGAGGCCCCCCCAGTGGCGGCGGTGGGTGCG
GGCGAGAGCAGCACCACCAAGAGCAGCAACACGAGCACTGCCACCACCAG
CCGCAAGGATGGTGAGTCGAAACGACATTCAGCTCGATTTGCCGGTCCAT
TGCCCGCATATTCAGGCTCGAATGAGACTTTATCATCGTCCAGGACCAAC
GCCACCTGTAATGCCGACCCGGAAGGATCTCAGGTAGTGGGCGTAAGCAT
GGACCCTTACGTCATGTCCTCGTACCGAGACCCCGCCCACCAACAGAAGC
AGCAGCAGGCTATAACCAGAATCGTCTATAGTGTCTGTTGCTTGTCGGAA
GGTCGTAGTAATGTGCGTCGCTTGGGAAGCCAGGGCTCGACCTCCTTTTC
TGGAGGCGGGGGAAGCCAACGTGGAGAAGGCAGCAGCGGCAGCAGCAGCA
GCAGCGGCCCCGTGACGTTTGCTTCGAGCGGGGCCATGGTCGCAATGGCA
GTGGGTGGGGTGGTCGTAGGGGCAATGACTGCAGGTTTAGGCCTTGTTGC
GCCCATGGTGATTGTCGGTCTCACAGCAGCTACAGGGTCGGGGGCAGCTG
TCTACGGAGCTGCATCCTCCTCGTCTCATGGAGGACTCAAGACGAAGCAG
GTAGCGCTGGTGTTGGCATTGGACAGCAAGGAAAGCGCAGAGGAATGGCG
CACGACGATTGAAGCTCGAATTCGGATGAGCCAGCGTTTCCCTCAGCTAA
GATGGATGTCCATGGTGGGCTTAGATAGACGGAAGCCCCATTCGCTCAGC
ATGGGGACCACCAGCAGCAGGAGCAGCAGCTGCAAGCAGCGGAGTGTACC
ATGCATTACGAAAAGATTGGAGAACGTAGATCGGTGGACAAGGGTGACGC
GCTGGCGTCCGTGGGGGGTGGATAATGGGATTCGGGTCTATGAGCTTGAT
CACGTCACTATCCAGACAGGTGTTGTCCAGCGATGGCCCACTTCAGTTTC
GACGGCTGCTTCGGAAGGTGGCTGCAGCATTTACAGTGAGAATGGAATTA
GAACATGGGGGCGGGCAACCAAGGCACCATTGCCTTGTCGGAAGGTGCAG
GTGACAGTGCGAGGGACGCCGTTAGAGACCTTCATTGCCTTGATCTCTGT
CCCTTACCGGATCCTGAACGGTGTGGTAGAGAGTGTACGGAACCTGGAAA
GACTAGATGACCAATCAGACGTAATTCATTTGACGTTCAAACCCTTATTC
TTGTGGCCGACCAGGACGGCGCCCCGAGACTTTTGTTTGCTTCGGTCCTG
GCGGTATGACGAGGATGGTACATACATCATTTGCTACGATTCCACCACAC
ACCGGGCGTGCCCTCCTTTGCCGGGGTATGTGCGTGGGGCCATGCATGCC
GTCTACACCATCAGCCCGAGGCGGCATTCGCGAGGGGGGGGCGGGGCTGT
GGAGTTAAATGAGGCCCCCGAGTGCCTGCTCACACATATCCTGCAGGTAG
ACCCGAAGGGGTGGGTGTGGCACCAACTAGGCTATTTAGATGCATTTGTC
ACGGAGATGCTGTGTCAGGTGCTTGATGTGCGGGATCTGCTGGAGACGGA
TCGATTCATGGCCGTGCATGTCGATACCAGCGAGGAAGGTGGGATGGGAG
GGGAGCAGGGCGCGAGGGGGAAGGGGAAAGGGAATGAATTAGGGAAGGGT
GAGCACACAGAAGAGGGTGCGAGCGGGGTTGAAAGTAGCGGCAATGCCGA
GCGGGGAATTGGGACGCTGGTGATGCATCAAGCGACGGTGCCTGCCGAAA
TGTGGGGGGACGTTGATGCGACAAGCTTTGTCGTGCGCGGTCCTAACTAC
TCCGTCAGTAAGCTTAAGGTGCCTTCGGAGCCAGCGGCCTTTCATTTACT
CGCCGTGGATTTGTTTGACCTTCCCGAAGCCCATGAGAATATTGCTGGGC
ATGTGAATAATCGTGTGCAGGTCGCGGTGGCGGCGGGGGATTGCCCACCA
TTTGTGTTTGTGGTGCAATTGCAGATTCCGGGGGTGGATCAACAGTTGGG
ATATGTCACTTATTTTTCCCCTCCAGACATGGCTTTATTGGAGGAAGACA
CACCGCTCTCTCGCGTGCTCAAGCCTTTTTTCTTCGGCTCGGATGATGGG
TATCGGGATTTGCGCTTCAAGTTGATTCCAAAGATCGTGGAGGGGAACTG
GGTTGTCAGAAAGAGTGTGGGCTCTACACCTGCCATTCTCGGCACGAAAC
TCAAGCAGACGTATCACAGAGGGACAAATTATTTTGAACTAGACATCAAC
ATCGCTTCATCGTCAGTGGCCGCGGGTGTGGTTCGCCTGGCGGCAGGGTA
TGCGAAGACGCTGGTGATTGACTTGGCTTTAGTGGTTCAGGGAGAAACGG
AGGACGAATTACCGGAGCGGGTGGTAGCAGGGTGGCGGATCAATAACATG
GATTTGGCTACGGCGAAGAGGTTGGAGTAG

Synonyms

Publications