jgi.p|Nanoce1779_2|580693, mRNA_2534 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580693
Unique Name	mRNA_2534
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2483
Alignment location	scaffold_5:582813..585295 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580779
Track	FilteredModels2
ProteinId	580693

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:582813..585295 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580693	gene_2534	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580693	mRNA_2534-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2534	CDS_2534	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:582813..585295+
coding sequence from alignment at scaffold_5:582813..585295+

mRNA sequence

>mRNA_2534 ID=mRNA_2534|Name=jgi.p|Nanoce1779_2|580693|organism=Nannochloropsis oceanica|type=mRNA|length=2483bp
GTTGCCGAGATGATGACGCAGGCGAACGACGGAAGCGGCTTCGGCTTGGA
TGATACCACGCACAAATACACTCATCACATCTTTTTTCAACAGATCAGAC
TCTCAGCATTGAGCTGAGCGCCGGAGTGGGGCCGCGGTGGTGCCTGATGA
TCCGTGCCGAGATAGTCCTGCCACGCCTGCCCCCCAAACTCACCAGCGAC
ACGGGAGGAAGTGTTGGATCGATTGCCTTTGCTGCTCGTTGTTTGACGAT
TGTAACAAGACTTGCACTAATCCAGTGCTTTACATACACAGATATCTTTC
TACGATCGCGACCAAGGAGGTGGTGGGTGGCTGCTGCAGCCAGACCGCGC
ACACAACGCTCCCTATCTTCCCATAAGGGACGAGGTCTAGACGTACTCCT
TCATGTTGACCTGTTCACAAGGCGTGGTTATCTTATGGCAAGATGCCATA
GTTTAAGCCTAGCCAGTGCACCCTTGCCACGTTACTGGTGCTGCGATTGC
TCTGTGTCATTTTTTTGTATCCCTTGCATTGGCACGAGTGGTGCCCTCCG
TCCTGCTCTTGCACGAGCAGCATTCTACTCTCTGACCACAGCGTTGGGCT
AATCATTTACTTCCTTATAACCCCTCAACCATCCACCACAGAGAATAATG
AATGACAGACGAAGGATAAGAACGACTGAGGAGCAGGAGCAGCAGCCGTC
AGACGTAGAAGTAGCAGGAGCAGTAGATCGCCGGTCGCGGGGAGCAGGAA
TGAGCATGCGACGGCAGCTCACAGCACTGGCCTTGTGCTGCTCGGCGTGT
GCCGTGCAAGCCTTTGTGGTGGTGCCTGTAATCAGTAATCATCCGCGGTC
TGCCCCTACCGGCTTCAGCTCCTCTCCCCCCCCCACTTCCTCTGCTTCCT
CCGCTTCCCTCCCCCTTTTCCTTCAGTCATCAAGACCACGTGGCGGCAGC
AGCGGCGGTAGCGGGAGCGACAGCCAGCTATTTATGTTGGCGGGGGGGCT
CCGCACACAGATTGGTGGGAAGGGCACCAGCTCCGCGGACAAAGCGAGCT
TGTTTCAGACATTGCGGACCACGCGTTCGGAAGACGAGATGCTGGCTATC
ATCACGCAGCTGGAGGAAAGCGGACAGGATTTAAATGTAAAGGATTATAC
GAGCATACTGGCGGCCTTGAAGAGATTCAAAAATTGGAAGCAGGCTTTGG
AGGTATTTGGGCGGATGAGGGAAAGGGGGGTGGAGCCTAATGCCATTACC
TATAACGCGGTGATGGGGGCATGCGGAGTAGCTGGCCGGTGGAAGGAGAC
ACTGGAACTCTTTCAGACCATGACCCGACGGGGATTGAGGCCTGATTCAG
TAAGCTTTGGGTCTCTGATGATTGGACTGGTGAGGGGGGGGCAATGGGAG
CAGGCCTTGGATGTGCTGGGGGAGATGAAAGAGAAGCGGATGGAGATCAC
AGAGGGGGTGTACACGACGGGCATCACGGCTTGCGAGAAGGGGGGACAGT
GGGTGCTGGCATTGGAATTGCTACGGGAGATGCATTTGAAGGGAATTGCT
CCGTCTCTCTTTGCTTACAATGCGGCGATATTCGCCTGCCGTCGAGACAA
GCAGTGGGTGCAGGCCACGGCCTTACTGGGCGAGATGCGACAAGATGGAT
TGATACCCGACCGGAATAGTTACCACGGGGCTATGGCTGCATGCGAGGAG
GCGGAGATGTGGGAGGGGGTAATGGATTTATACGAGGAACTCAGGGCCAT
GAGCCTTGAGCCGTCGCGACAGAGCTACGAGTACGTAACACGCGCCTGCC
GGGAGTACCTGACCACGCACGGAGAAGACGAGCGGCTGAAGAATTACTTG
AGACTGAACAAGATTTCCCCAAATGTGTTGACGGATGAGAGTGACGTCAT
TTTTCTGGCGGGGCCGAAGATCTTGGAGTTTGAAGGTGGGGTAGAAAGCT
TGGAAAGCGAGCCGGAGGAGCAGCCGACATGGATGAGCTTCGCAGATGAC
GAGTGATTACTCAAGGAAAGAGAGAAGAGTGAAAGCAGTATTTCTCTTTA
GGAGGGAGATGTTGTAATGGATTGTCGGGGATGATAATAGGAAGGTAAGT
GGGAAGGAAAGGAAGTTTTCTGCTTTGCTTGTTTTTTGTTTTTCTTTATT
TCTCACTTTTTCTTCAAATTGCTGTGCGGTTGGCGTGTGTCTGGGGCGGA
AGAAGACGATCTAGCTGTTAAGTAGTAGGGCTTTCATGCAAAATTGCGGA
TTACTGGGTTGAGATCCGCACGGCAGACGAGGAAAGGATAAGAAGTAGTC
ATGAGGAGGTGGAACCGAAGGAGAGAGAGCATATTTGCCAGACTACCTTG
CAGGATCCATTCAGCAACACAACAAAAAATATGAAAAGAGCGAGAGGTAG
CGAAAGCACGGCTTTCTCACAAGTGTGGACTGACTATCGCGCCAGAACGA
AAATAAAGAAGAAAGACAAAAAACACTTAGACA

protein sequence of jgi.p|Nanoce1779_2|580693

>mRNA_2534-protein ID=mRNA_2534-protein|Name=jgi.p|Nanoce1779_2|580693|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MNDRRRIRTTEEQEQQPSDVEVAGAVDRRSRGAGMSMRRQLTALALCCSA
CAVQAFVVVPVISNHPRSAPTGFSSSPPPTSSASSASLPLFLQSSRPRGG
SSGGSGSDSQLFMLAGGLRTQIGGKGTSSADKASLFQTLRTTRSEDEMLA
IITQLEESGQDLNVKDYTSILAALKRFKNWKQALEVFGRMRERGVEPNAI
TYNAVMGACGVAGRWKETLELFQTMTRRGLRPDSVSFGSLMIGLVRGGQW
EQALDVLGEMKEKRMEITEGVYTTGITACEKGGQWVLALELLREMHLKGI
APSLFAYNAAIFACRRDKQWVQATALLGEMRQDGLIPDRNSYHGAMAACE
EAEMWEGVMDLYEELRAMSLEPSRQSYEYVTRACREYLTTHGEDERLKNY
LRLNKISPNVLTDESDVIFLAGPKILEFEGGVESLESEPEEQPTWMSFAD
DE*

mRNA from alignment at scaffold_5:582813..585295+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2534 ID=mRNA_2534|Name=jgi.p|Nanoce1779_2|580693|organism=Nannochloropsis oceanica|type=mRNA|length=2483bp|location=Sequence derived from alignment at scaffold_5:582813..585295+ (Nannochloropsis oceanica)
GTTGCCGAGATGATGACGCAGGCGAACGACGGAAGCGGCTTCGGCTTGGA
TGATACCACGCACAAATACACTCATCACATCTTTTTTCAACAGATCAGAC
TCTCAGCATTGAGCTGAGCGCCGGAGTGGGGCCGCGGTGGTGCCTGATGA
TCCGTGCCGAGATAGTCCTGCCACGCCTGCCCCCCAAACTCACCAGCGAC
ACGGGAGGAAGTGTTGGATCGATTGCCTTTGCTGCTCGTTGTTTGACGAT
TGTAACAAGACTTGCACTAATCCAGTGCTTTACATACACAGATATCTTTC
TACGATCGCGACCAAGGAGGTGGTGGGTGGCTGCTGCAGCCAGACCGCGC
ACACAACGCTCCCTATCTTCCCATAAGGGACGAGGTCTAGACGTACTCCT
TCATGTTGACCTGTTCACAAGGCGTGGTTATCTTATGGCAAGATGCCATA
GTTTAAGCCTAGCCAGTGCACCCTTGCCACGTTACTGGTGCTGCGATTGC
TCTGTGTCATTTTTTTGTATCCCTTGCATTGGCACGAGTGGTGCCCTCCG
TCCTGCTCTTGCACGAGCAGCATTCTACTCTCTGACCACAGCGTTGGGCT
AATCATTTACTTCCTTATAACCCCTCAACCATCCACCACAGAGAATAATG
AATGACAGACGAAGGATAAGAACGACTGAGGAGCAGGAGCAGCAGCCGTC
AGACGTAGAAGTAGCAGGAGCAGTAGATCGCCGGTCGCGGGGAGCAGGAA
TGAGCATGCGACGGCAGCTCACAGCACTGGCCTTGTGCTGCTCGGCGTGT
GCCGTGCAAGCCTTTGTGGTGGTGCCTGTAATCAGTAATCATCCGCGGTC
TGCCCCTACCGGCTTCAGCTCCTCTCCCCCCCCCACTTCCTCTGCTTCCT
CCGCTTCCCTCCCCCTTTTCCTTCAGTCATCAAGACCACGTGGCGGCAGC
AGCGGCGGTAGCGGGAGCGACAGCCAGCTATTTATGTTGGCGGGGGGGCT
CCGCACACAGATTGGTGGGAAGGGCACCAGCTCCGCGGACAAAGCGAGCT
TGTTTCAGACATTGCGGACCACGCGTTCGGAAGACGAGATGCTGGCTATC
ATCACGCAGCTGGAGGAAAGCGGACAGGATTTAAATGTAAAGGATTATAC
GAGCATACTGGCGGCCTTGAAGAGATTCAAAAATTGGAAGCAGGCTTTGG
AGGTATTTGGGCGGATGAGGGAAAGGGGGGTGGAGCCTAATGCCATTACC
TATAACGCGGTGATGGGGGCATGCGGAGTAGCTGGCCGGTGGAAGGAGAC
ACTGGAACTCTTTCAGACCATGACCCGACGGGGATTGAGGCCTGATTCAG
TAAGCTTTGGGTCTCTGATGATTGGACTGGTGAGGGGGGGGCAATGGGAG
CAGGCCTTGGATGTGCTGGGGGAGATGAAAGAGAAGCGGATGGAGATCAC
AGAGGGGGTGTACACGACGGGCATCACGGCTTGCGAGAAGGGGGGACAGT
GGGTGCTGGCATTGGAATTGCTACGGGAGATGCATTTGAAGGGAATTGCT
CCGTCTCTCTTTGCTTACAATGCGGCGATATTCGCCTGCCGTCGAGACAA
GCAGTGGGTGCAGGCCACGGCCTTACTGGGCGAGATGCGACAAGATGGAT
TGATACCCGACCGGAATAGTTACCACGGGGCTATGGCTGCATGCGAGGAG
GCGGAGATGTGGGAGGGGGTAATGGATTTATACGAGGAACTCAGGGCCAT
GAGCCTTGAGCCGTCGCGACAGAGCTACGAGTACGTAACACGCGCCTGCC
GGGAGTACCTGACCACGCACGGAGAAGACGAGCGGCTGAAGAATTACTTG
AGACTGAACAAGATTTCCCCAAATGTGTTGACGGATGAGAGTGACGTCAT
TTTTCTGGCGGGGCCGAAGATCTTGGAGTTTGAAGGTGGGGTAGAAAGCT
TGGAAAGCGAGCCGGAGGAGCAGCCGACATGGATGAGCTTCGCAGATGAC
GAGTGATTACTCAAGGAAAGAGAGAAGAGTGAAAGCAGTATTTCTCTTTA
GGAGGGAGATGTTGTAATGGATTGTCGGGGATGATAATAGGAAGGTAAGT
GGGAAGGAAAGGAAGTTTTCTGCTTTGCTTGTTTTTTGTTTTTCTTTATT
TCTCACTTTTTCTTCAAATTGCTGTGCGGTTGGCGTGTGTCTGGGGCGGA
AGAAGACGATCTAGCTGTTAAGTAGTAGGGCTTTCATGCAAAATTGCGGA
TTACTGGGTTGAGATCCGCACGGCAGACGAGGAAAGGATAAGAAGTAGTC
ATGAGGAGGTGGAACCGAAGGAGAGAGAGCATATTTGCCAGACTACCTTG
CAGGATCCATTCAGCAACACAACAAAAAATATGAAAAGAGCGAGAGGTAG
CGAAAGCACGGCTTTCTCACAAGTGTGGACTGACTATCGCGCCAGAACGA
AAATAAAGAAGAAAGACAAAAAACACTTAGACA

Coding sequence (CDS) from alignment at scaffold_5:582813..585295+

>mRNA_2534 ID=mRNA_2534|Name=jgi.p|Nanoce1779_2|580693|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_5:582813..585295+ (Nannochloropsis oceanica)
ATGAATGACAGACGAAGGATAAGAACGACTGAGGAGCAGGAGCAGCAGCC
GTCAGACGTAGAAGTAGCAGGAGCAGTAGATCGCCGGTCGCGGGGAGCAG
GAATGAGCATGCGACGGCAGCTCACAGCACTGGCCTTGTGCTGCTCGGCG
TGTGCCGTGCAAGCCTTTGTGGTGGTGCCTGTAATCAGTAATCATCCGCG
GTCTGCCCCTACCGGCTTCAGCTCCTCTCCCCCCCCCACTTCCTCTGCTT
CCTCCGCTTCCCTCCCCCTTTTCCTTCAGTCATCAAGACCACGTGGCGGC
AGCAGCGGCGGTAGCGGGAGCGACAGCCAGCTATTTATGTTGGCGGGGGG
GCTCCGCACACAGATTGGTGGGAAGGGCACCAGCTCCGCGGACAAAGCGA
GCTTGTTTCAGACATTGCGGACCACGCGTTCGGAAGACGAGATGCTGGCT
ATCATCACGCAGCTGGAGGAAAGCGGACAGGATTTAAATGTAAAGGATTA
TACGAGCATACTGGCGGCCTTGAAGAGATTCAAAAATTGGAAGCAGGCTT
TGGAGGTATTTGGGCGGATGAGGGAAAGGGGGGTGGAGCCTAATGCCATT
ACCTATAACGCGGTGATGGGGGCATGCGGAGTAGCTGGCCGGTGGAAGGA
GACACTGGAACTCTTTCAGACCATGACCCGACGGGGATTGAGGCCTGATT
CAGTAAGCTTTGGGTCTCTGATGATTGGACTGGTGAGGGGGGGGCAATGG
GAGCAGGCCTTGGATGTGCTGGGGGAGATGAAAGAGAAGCGGATGGAGAT
CACAGAGGGGGTGTACACGACGGGCATCACGGCTTGCGAGAAGGGGGGAC
AGTGGGTGCTGGCATTGGAATTGCTACGGGAGATGCATTTGAAGGGAATT
GCTCCGTCTCTCTTTGCTTACAATGCGGCGATATTCGCCTGCCGTCGAGA
CAAGCAGTGGGTGCAGGCCACGGCCTTACTGGGCGAGATGCGACAAGATG
GATTGATACCCGACCGGAATAGTTACCACGGGGCTATGGCTGCATGCGAG
GAGGCGGAGATGTGGGAGGGGGTAATGGATTTATACGAGGAACTCAGGGC
CATGAGCCTTGAGCCGTCGCGACAGAGCTACGAGTACGTAACACGCGCCT
GCCGGGAGTACCTGACCACGCACGGAGAAGACGAGCGGCTGAAGAATTAC
TTGAGACTGAACAAGATTTCCCCAAATGTGTTGACGGATGAGAGTGACGT
CATTTTTCTGGCGGGGCCGAAGATCTTGGAGTTTGAAGGTGGGGTAGAAA
GCTTGGAAAGCGAGCCGGAGGAGCAGCCGACATGGATGAGCTTCGCAGAT
GACGAGTGA

Synonyms

Publications