jgi.p|Nanoce1779_2|580691, mRNA_2532 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580691
Unique Name	mRNA_2532
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	4004
Alignment location	scaffold_5:578771..582774 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580777
Track	FilteredModels2
ProteinId	580691

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:578771..582774 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580691	gene_2532	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580691	mRNA_2532-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2532	CDS_2532	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:578771..582774-
coding sequence from alignment at scaffold_5:578771..582774-

mRNA sequence

>mRNA_2532 ID=mRNA_2532|Name=jgi.p|Nanoce1779_2|580691|organism=Nannochloropsis oceanica|type=mRNA|length=4004bp
CGCGACGGCACGACTGGCCCATTCAGTAGAAATGACAAGGGCATGCTCGC
TTTTAGTCGTGTCCGGAGGTAGTCGACAGACCAAAACGATGTGTAGTATA
AGACTATTATCGTTTCTTGTGCGCGGGTCACACGTTCAAATAAATAGTCT
ACGCCACCGCCAAGTGAGACGCCGCCTATTGTTCCGTGGGGACGGGGAGA
GGAGAGCGGCCGCAGGGCTCGTCGGTGAACGCACCCTCATTGGAAGCAAG
TGATGAGGAGCTGTACGCATTAGTACACGAAGAGAAGTATGATCTCTCTG
CGAAAAAAGAATAAGAAGCGTGCACGTCGCGAGCGCGATGATGCCCACGG
AAAGGCGAAAGCGTGACGACCAAAAACAAAAATAGTGAAATTGTGCCTTG
GCTTGTAGCTTGCAGAAACGAATGGAAAGAAAAAGAAGAGAGTGATAGAT
GTGAGTGCGAGTGTACCTTCAGTTTTTATTCCATTTTCTCGTCTGCAATC
TGACAAGGTCACAAAATACAAAGGCGGGAGCAGGTTCAGGAGGACAGAGA
CTTCTGACATAAGAAGAGCTGGGTGGTGGCTAGAACGATGACGAAAGAGT
CCCCTCTCTCATTTCCACTCACAGGATGCTACTAAGACGATAACGATGTA
TCCCACCTGCACCGTTCCTTTCGTTGGCAGTAGCGGGTGCCTGTCCCCAA
CACGTCTGCAGTATAGTGAGTGCGCTCTTCTACCCCCTCCCCCATTCCTC
TCTCTCTCGCACTCTCTACTAGCTACGACTATATTCCCTATATAAGAAGG
GCAAGAAAAAGAGAAGAAGAAGACATAGTCCCCTCTCTCTTTTCCTCCCT
CTTTCCCTTGTTTGGACCAGTCACCGCATCCAGTACAGGAGGGAGGAGGC
CCTGTTGCCTGTGTCACCTGCGTCGTTTCACACAACGTATCAGAAAAGAA
GGCGCTGCCAGTGATGCTATGTTGATAAATAATAATGCGATCAGGGCAAG
GAGACGTTGCCCGTGATGCTACGTGGATCAATAGTAACGCGATCATATCG
GGATTGGTAAACGGAAGGAGTTGATCGTGAGTACCTTCATTCTTTTCCTC
TTTTTCGCTCAGCACATGTTGCTGCCGAAGAAGGAAGGCAGCGTCTCAGC
CGTTCCTTTTTGTCGTGAACTTAAGAGAATCGCCGACCGGAGACGTGAAT
ATGTACAAAATTTCCGTACGAATGAATCACGTGCCGCCAACCGGAACCAA
CCCAATGATGGGTGGTTCCTCCAGCTCCCGGGCGACTGCGGAAGCCTTTG
GCCACCCTGATCTCGCAGAAGGTTCCTCCTCCCTTCCCTCCCTCTCTCCC
TCCTGCCAACCCTCTCTCCCTCTATGGACGCACATCACAACACGATTTCC
GTGTTCATGTCGATTAGACATGTCGATTGAATTTGGCACACACGTAAAGG
ACGTAAATTCGGATTGCATGGATGACGGGGTTCACTGCTTCATTCGATTC
GCAGTCCCACTCCCTCTTCCCTCCGAGGATTCCCATTGTTTACTATGCTG
TCCAAACATTCCTTTACATAAGCAGCCACTTCTTCCAAAACATCTCTACC
CCTTTGTGTGAGACAATAGTAGTCGCCATTATCATTGCTCCCCCGTTCGC
AAAGTGCAAAGGTACGGTTGCCGATGTGGGCCACGACACGAAAATAAAAC
GTCCTTTCCGACCCACAACCCGCCTGACCGAATATCGCTTCCAGTCGATA
GTGGCTGTCCTTCACGCGCACTTGTTTTGTCAAACTCGCCGTGGAGGCTG
GAGGGACGCTGACTTGACAGCTGCTGCCGTTGGCGGCCCATCACCATGTA
TCATCTCTGGGATCCAAGCGTTTGGACGCGTCGCATCCCTTGTCTTGACC
ACGATGCTCATCCCCACTTCCAGACTGTTCGAGAAAGGCAATAGATATGC
TCTTAAGCTTCTTTTTGGCAATGACTTTTTTCCGTACTCTGTTACTTGGT
TGACACGATCGCCGGATACAAGAGCTGTGTATTCCCTCGCCCACCAACTT
CCCTCGCAGCTTTGTTTGATGCTTCTTCCCTCAAGCTTCCCACCTCGTTT
CCTTGCTTGTTTAAACTTGATTTTTATTAAATGTGTGGATTTAAGTTGGT
GTGTCTTTAAACAATCAAGTGTCCTTTCCACCTTTCCTGTTGTCCCTCTC
CCATATCCGTCCCCAAACAGAATGCAGGGGTGCCTCGCATTTTTCTTCCT
TTCCTTCTCATCCCACACAGCCCCTCTCCACAAAACACACACACATACAT
ACACATGACGCTCACCTATTCCCATCCTTATCTTCCGGCCGCACTCGGAC
AATCACAGCCGATCCTACCCTCACCACCCACTCTACTTCGCCATGGGACG
AGACAAGCCTAGCCAGCCCAAGCCAACAAAGGAGGGTGATGTTAAGCCCA
TAATCACTGCCGAGAAGGGCAAGAAGGAGCCCAAGAAGAATCAGAAGCTC
CGCCGCTAGAGGGTTCACATGGTGGAAGCCAGCAAAGGGGAACGTCAAGT
ACTCTTGCGCTGTAGTGTACGCTGCGTCGTAAGGACCCTGAAATTCCACT
TATTAAGTCAACCATGTCTCTCGCTACATTCCAATCCACTTCATGATATG
CCTCTGCATGCCTTCTCTGCACCCGTGCGGGCATCCGTGCTGCTTTATTT
CCGCTCTGCCAGAGAAACAGTGCCCGGCCTAGATGTAGCGCATAATAACA
AAAGACAACTCTTATATATATTCTTAAATGTACAACTGGTTCTCTTCATT
TAGTCTGCTCTCGTGCTCGTCATGTACATGGCTTTATTACTGTATCAAAC
TTACATGTCCTCTCACAAACCTAACCTGCTCTATTGTTCCTGTACAATGC
AACTCTGCCCCTCTTACCAATTTCCCCTCACACATCCTTCCTCAAACTAA
ACTATTCCCAGTACAACCATATCGATTCCACGGCTTACACTCCAGACCAC
TTCCAGCTCGATAAGTTGTCCTGCCACTATCGATATGGCACCCACTAGAA
TAGCCCCTTGTCTGTAGGAAGTTTCTTCCTGGCCTGGGCCCGTCGGGCCC
GTGTTAAACGTCACTCCGTCGTCATTTTTGTTGCCTCCGTCAGTCCGTGG
AGTCGTCAGGTGTAGGGAAAACCAGAAGCTCACCGCGTGCAGCGTAGCTC
CGGGTGCCGCTACCGTCACAGGCAGCTCCACCCGTGAGCGAGCCACAACC
TCCTTCAAGTCCTTTTTCTCCTCCTCACACTGACGTGAAGTACCGATAAG
GCTTCGCATGTCCACTCGAAAGGCCCTCGTTATAGCAGTCACGGGTCGAT
GCTCGACTGTATTATTCAAATCAAGCCCTTGAAATTTTCGTACGCCCAAT
CCATCCAGTAATCGCCCTGCGGGAAACCCTAACAGATTCTCAGGCTCCAA
TCGGTTCTGTCTTAAAAGTGCGGGGGCCTCCAGCCCCTGTACGAAGACAG
AGACGGCGACGGGTAGCAACGAAGCCGTTGTCGTTGCTGTCGATGCATTT
AGTACGCTTTGTAGCAGACGTGCTTCTTGTATAGCACCTTGCCGGAGCCA
TCCCGAGCATTCTACGAGGTCATGAATCACGAGCACGTGGTGACTGGGAG
GCGCAGCTCTCTCAGAATTCTGATCGGGAGGAAAGAATAGCGCCTGCGGC
AACAGTTTCATAAGCTTCGAGCCTGTCTTGTCATCGATGCTGGATATGAC
GTGAACGGAACACAAAGGTGTGTCTGAGCCTTGCTGGCCCCAAGTCCGAA
GAGCCGCGGCGGAATCCTCATTTCCCGTCACAATCGTTACAGGGGCAGAC
TGGAGGGTAGGTACGCTGGCAGCTACGAATCCTAAAACAGAATAATTCCC
GCTCCATTCTACCACTGCGGTTATTGGCTGCCTATCCTTTTCTACCCTTG
ATGTCAGGATATATAAGGCTTGCCGGTAGGCCTGAATATGGTGGGTGTCG
TTCA

protein sequence of jgi.p|Nanoce1779_2|580691

>mRNA_2532-protein ID=mRNA_2532-protein|Name=jgi.p|Nanoce1779_2|580691|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MTGFTASFDSQSHSLFPPRIPIVYYAVQTFLYISSHFFQNISTPLCETIV
VAIIIAPPFAKCKGTVADVGHDTKIKRPFRPTTRLTEYRFQSIVAVLHAH
LFCQTRRGGWRDADLTAAAVGGPSPCIISGIQAFGRVASLVLTTMLIPTS
RLFEKGNRYALKLLFGNDFFPYSVTWLTRSPDTRAVYSLAHQLPSQLCLM
LLPSSFPPRFLACLNLIFIKCVDLSWCVFKQSSVLSTFPVVPLPYPSPNR
MQGCLAFFFLSFSSHTAPLHKTHTHTYT*

mRNA from alignment at scaffold_5:578771..582774-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2532 ID=mRNA_2532|Name=jgi.p|Nanoce1779_2|580691|organism=Nannochloropsis oceanica|type=mRNA|length=4004bp|location=Sequence derived from alignment at scaffold_5:578771..582774- (Nannochloropsis oceanica)
CGCGACGGCACGACTGGCCCATTCAGTAGAAATGACAAGGGCATGCTCGC
TTTTAGTCGTGTCCGGAGGTAGTCGACAGACCAAAACGATGTGTAGTATA
AGACTATTATCGTTTCTTGTGCGCGGGTCACACGTTCAAATAAATAGTCT
ACGCCACCGCCAAGTGAGACGCCGCCTATTGTTCCGTGGGGACGGGGAGA
GGAGAGCGGCCGCAGGGCTCGTCGGTGAACGCACCCTCATTGGAAGCAAG
TGATGAGGAGCTGTACGCATTAGTACACGAAGAGAAGTATGATCTCTCTG
CGAAAAAAGAATAAGAAGCGTGCACGTCGCGAGCGCGATGATGCCCACGG
AAAGGCGAAAGCGTGACGACCAAAAACAAAAATAGTGAAATTGTGCCTTG
GCTTGTAGCTTGCAGAAACGAATGGAAAGAAAAAGAAGAGAGTGATAGAT
GTGAGTGCGAGTGTACCTTCAGTTTTTATTCCATTTTCTCGTCTGCAATC
TGACAAGGTCACAAAATACAAAGGCGGGAGCAGGTTCAGGAGGACAGAGA
CTTCTGACATAAGAAGAGCTGGGTGGTGGCTAGAACGATGACGAAAGAGT
CCCCTCTCTCATTTCCACTCACAGGATGCTACTAAGACGATAACGATGTA
TCCCACCTGCACCGTTCCTTTCGTTGGCAGTAGCGGGTGCCTGTCCCCAA
CACGTCTGCAGTATAGTGAGTGCGCTCTTCTACCCCCTCCCCCATTCCTC
TCTCTCTCGCACTCTCTACTAGCTACGACTATATTCCCTATATAAGAAGG
GCAAGAAAAAGAGAAGAAGAAGACATAGTCCCCTCTCTCTTTTCCTCCCT
CTTTCCCTTGTTTGGACCAGTCACCGCATCCAGTACAGGAGGGAGGAGGC
CCTGTTGCCTGTGTCACCTGCGTCGTTTCACACAACGTATCAGAAAAGAA
GGCGCTGCCAGTGATGCTATGTTGATAAATAATAATGCGATCAGGGCAAG
GAGACGTTGCCCGTGATGCTACGTGGATCAATAGTAACGCGATCATATCG
GGATTGGTAAACGGAAGGAGTTGATCGTGAGTACCTTCATTCTTTTCCTC
TTTTTCGCTCAGCACATGTTGCTGCCGAAGAAGGAAGGCAGCGTCTCAGC
CGTTCCTTTTTGTCGTGAACTTAAGAGAATCGCCGACCGGAGACGTGAAT
ATGTACAAAATTTCCGTACGAATGAATCACGTGCCGCCAACCGGAACCAA
CCCAATGATGGGTGGTTCCTCCAGCTCCCGGGCGACTGCGGAAGCCTTTG
GCCACCCTGATCTCGCAGAAGGTTCCTCCTCCCTTCCCTCCCTCTCTCCC
TCCTGCCAACCCTCTCTCCCTCTATGGACGCACATCACAACACGATTTCC
GTGTTCATGTCGATTAGACATGTCGATTGAATTTGGCACACACGTAAAGG
ACGTAAATTCGGATTGCATGGATGACGGGGTTCACTGCTTCATTCGATTC
GCAGTCCCACTCCCTCTTCCCTCCGAGGATTCCCATTGTTTACTATGCTG
TCCAAACATTCCTTTACATAAGCAGCCACTTCTTCCAAAACATCTCTACC
CCTTTGTGTGAGACAATAGTAGTCGCCATTATCATTGCTCCCCCGTTCGC
AAAGTGCAAAGGTACGGTTGCCGATGTGGGCCACGACACGAAAATAAAAC
GTCCTTTCCGACCCACAACCCGCCTGACCGAATATCGCTTCCAGTCGATA
GTGGCTGTCCTTCACGCGCACTTGTTTTGTCAAACTCGCCGTGGAGGCTG
GAGGGACGCTGACTTGACAGCTGCTGCCGTTGGCGGCCCATCACCATGTA
TCATCTCTGGGATCCAAGCGTTTGGACGCGTCGCATCCCTTGTCTTGACC
ACGATGCTCATCCCCACTTCCAGACTGTTCGAGAAAGGCAATAGATATGC
TCTTAAGCTTCTTTTTGGCAATGACTTTTTTCCGTACTCTGTTACTTGGT
TGACACGATCGCCGGATACAAGAGCTGTGTATTCCCTCGCCCACCAACTT
CCCTCGCAGCTTTGTTTGATGCTTCTTCCCTCAAGCTTCCCACCTCGTTT
CCTTGCTTGTTTAAACTTGATTTTTATTAAATGTGTGGATTTAAGTTGGT
GTGTCTTTAAACAATCAAGTGTCCTTTCCACCTTTCCTGTTGTCCCTCTC
CCATATCCGTCCCCAAACAGAATGCAGGGGTGCCTCGCATTTTTCTTCCT
TTCCTTCTCATCCCACACAGCCCCTCTCCACAAAACACACACACATACAT
ACACATGACGCTCACCTATTCCCATCCTTATCTTCCGGCCGCACTCGGAC
AATCACAGCCGATCCTACCCTCACCACCCACTCTACTTCGCCATGGGACG
AGACAAGCCTAGCCAGCCCAAGCCAACAAAGGAGGGTGATGTTAAGCCCA
TAATCACTGCCGAGAAGGGCAAGAAGGAGCCCAAGAAGAATCAGAAGCTC
CGCCGCTAGAGGGTTCACATGGTGGAAGCCAGCAAAGGGGAACGTCAAGT
ACTCTTGCGCTGTAGTGTACGCTGCGTCGTAAGGACCCTGAAATTCCACT
TATTAAGTCAACCATGTCTCTCGCTACATTCCAATCCACTTCATGATATG
CCTCTGCATGCCTTCTCTGCACCCGTGCGGGCATCCGTGCTGCTTTATTT
CCGCTCTGCCAGAGAAACAGTGCCCGGCCTAGATGTAGCGCATAATAACA
AAAGACAACTCTTATATATATTCTTAAATGTACAACTGGTTCTCTTCATT
TAGTCTGCTCTCGTGCTCGTCATGTACATGGCTTTATTACTGTATCAAAC
TTACATGTCCTCTCACAAACCTAACCTGCTCTATTGTTCCTGTACAATGC
AACTCTGCCCCTCTTACCAATTTCCCCTCACACATCCTTCCTCAAACTAA
ACTATTCCCAGTACAACCATATCGATTCCACGGCTTACACTCCAGACCAC
TTCCAGCTCGATAAGTTGTCCTGCCACTATCGATATGGCACCCACTAGAA
TAGCCCCTTGTCTGTAGGAAGTTTCTTCCTGGCCTGGGCCCGTCGGGCCC
GTGTTAAACGTCACTCCGTCGTCATTTTTGTTGCCTCCGTCAGTCCGTGG
AGTCGTCAGGTGTAGGGAAAACCAGAAGCTCACCGCGTGCAGCGTAGCTC
CGGGTGCCGCTACCGTCACAGGCAGCTCCACCCGTGAGCGAGCCACAACC
TCCTTCAAGTCCTTTTTCTCCTCCTCACACTGACGTGAAGTACCGATAAG
GCTTCGCATGTCCACTCGAAAGGCCCTCGTTATAGCAGTCACGGGTCGAT
GCTCGACTGTATTATTCAAATCAAGCCCTTGAAATTTTCGTACGCCCAAT
CCATCCAGTAATCGCCCTGCGGGAAACCCTAACAGATTCTCAGGCTCCAA
TCGGTTCTGTCTTAAAAGTGCGGGGGCCTCCAGCCCCTGTACGAAGACAG
AGACGGCGACGGGTAGCAACGAAGCCGTTGTCGTTGCTGTCGATGCATTT
AGTACGCTTTGTAGCAGACGTGCTTCTTGTATAGCACCTTGCCGGAGCCA
TCCCGAGCATTCTACGAGGTCATGAATCACGAGCACGTGGTGACTGGGAG
GCGCAGCTCTCTCAGAATTCTGATCGGGAGGAAAGAATAGCGCCTGCGGC
AACAGTTTCATAAGCTTCGAGCCTGTCTTGTCATCGATGCTGGATATGAC
GTGAACGGAACACAAAGGTGTGTCTGAGCCTTGCTGGCCCCAAGTCCGAA
GAGCCGCGGCGGAATCCTCATTTCCCGTCACAATCGTTACAGGGGCAGAC
TGGAGGGTAGGTACGCTGGCAGCTACGAATCCTAAAACAGAATAATTCCC
GCTCCATTCTACCACTGCGGTTATTGGCTGCCTATCCTTTTCTACCCTTG
ATGTCAGGATATATAAGGCTTGCCGGTAGGCCTGAATATGGTGGGTGTCG
TTCA

Coding sequence (CDS) from alignment at scaffold_5:578771..582774-

>mRNA_2532 ID=mRNA_2532|Name=jgi.p|Nanoce1779_2|580691|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at scaffold_5:578771..582774- (Nannochloropsis oceanica)
ATGACGGGGTTCACTGCTTCATTCGATTCGCAGTCCCACTCCCTCTTCCC
TCCGAGGATTCCCATTGTTTACTATGCTGTCCAAACATTCCTTTACATAA
GCAGCCACTTCTTCCAAAACATCTCTACCCCTTTGTGTGAGACAATAGTA
GTCGCCATTATCATTGCTCCCCCGTTCGCAAAGTGCAAAGGTACGGTTGC
CGATGTGGGCCACGACACGAAAATAAAACGTCCTTTCCGACCCACAACCC
GCCTGACCGAATATCGCTTCCAGTCGATAGTGGCTGTCCTTCACGCGCAC
TTGTTTTGTCAAACTCGCCGTGGAGGCTGGAGGGACGCTGACTTGACAGC
TGCTGCCGTTGGCGGCCCATCACCATGTATCATCTCTGGGATCCAAGCGT
TTGGACGCGTCGCATCCCTTGTCTTGACCACGATGCTCATCCCCACTTCC
AGACTGTTCGAGAAAGGCAATAGATATGCTCTTAAGCTTCTTTTTGGCAA
TGACTTTTTTCCGTACTCTGTTACTTGGTTGACACGATCGCCGGATACAA
GAGCTGTGTATTCCCTCGCCCACCAACTTCCCTCGCAGCTTTGTTTGATG
CTTCTTCCCTCAAGCTTCCCACCTCGTTTCCTTGCTTGTTTAAACTTGAT
TTTTATTAAATGTGTGGATTTAAGTTGGTGTGTCTTTAAACAATCAAGTG
TCCTTTCCACCTTTCCTGTTGTCCCTCTCCCATATCCGTCCCCAAACAGA
ATGCAGGGGTGCCTCGCATTTTTCTTCCTTTCCTTCTCATCCCACACAGC
CCCTCTCCACAAAACACACACACATACATACACATGA

Synonyms

Publications