jgi.p|Nanoce1779_2|564065, mRNA_2531 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|564065
Unique Name	mRNA_2531
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2598
Alignment location	scaffold_5:577231..579828 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	564151
Track	FilteredModels2
ProteinId	564065

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:577231..579828 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|564065	gene_2531	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|564065	mRNA_2531-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2531	CDS_2531	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:577231..579828+
coding sequence from alignment at scaffold_5:577231..579828+

mRNA sequence

>mRNA_2531 ID=mRNA_2531|Name=jgi.p|Nanoce1779_2|564065|organism=Nannochloropsis oceanica|type=mRNA|length=2598bp
ATGTCCTCCTCCTCCTCCTCCTCCTCTTCCGACACGATTCGTTTATTGCC
TGCGCACGCCAACATTTTGGCATCGGTCCAAGAGGCCCGGGCGGCATGGC
GGGGGCGACGTGATGCAGCGGCGGCGGCTCAAGGATTTTTACGCATCGTA
CAGGAAGTGCCTAGCCTATTACGGGAGCTTGAGGTCGAGCTGGGTGAATC
GCTCGGGGCTTACGCGAATGAATTGTATCAAGAGGGCGCCATGCCCACAG
CGTTGTGGTTGATGGATAATGCCACACGCAGCATGCCAAGCTCTAAGATT
CTGGCGTACGAGCAAGGTTGCCTCTTCTTTCGTGCCCGTCAATATCTGCC
TGCCCTTGACGCCTTCCAGCGAGCCCTGCGCATTGATCCGGGGTATTTTG
CGGCTTTAGATGCACTCGAAAACATTAAAAATTTGTCTTTGGATCGGTGG
CACTTCAGGATGCTCAACGATCTGAATCGCAACACTACGTATCAACTAGC
TCTACGTCGCGTCCTTTTGGAAGAGACGATTCGGCTTGGGCGTGCACCAA
AGGTAATGGACATTGGGACAGGCACAGGGTTGCTTGCCTATTTAGCAATT
GAAGCTGGTGCGGGCAAGGTGATAGCCTGCGAGACTAACCCTGTGCTGTG
CGCCGTGGCCTCTGACCTTTTATGCACGAAAGAGGACCGTGTTCAGATCT
TGAACCAGTCGTCGTATGACATACAGCTTGACGGGCCTGTGGACGTGGTT
GTGACCGAGCTAGTGGATTCAGGCCTGCTCGGCGAACACGTTCTGCCCGT
GCTGCGGCACGCCCGGAAGCATATGTTACGGCCCGGAGGGCGAGTTATTC
CGCACGCGGCCGTGGTATATGCTAGGGTCATTGAGTCGACTGAGGTTAGA
CGGCGCTCGCGTTTGTTGAAGGTGGATGGGGTAAAAAGCTCGTGGTGGGG
AGGGAGAGATAGTGGATGCGAGGAATTAAGTGAAGGTGGGAGAAATTCTA
AGAGCAGCAGCGACGGGAGCACCAACAAAAACAACGACGAAAACAAAAAT
TCACTTCCCAACGTCAGGGTAGACGAAACCTATACTTGCGAGTCCCTTAC
TACTCTGCAGCATCGATGTCTGACCGAAGCTGTGGCCGTGATTGAGATTC
CCCTCTCGCACCCACCGGCTCGAGCAAATGACGCATCGGACGCCTCCCTA
ACTGAGGATATAAATCTGGAAGTGATCGCCGATGGACAGGCAGATGCGGT
GGCCATGTGGTTCGATTTAATCTTGCTTCCTTCTGATGTTGAGGCAGACA
GGTGTGCCTTCTCAACAGACCCCGAGCGTAAAGGAAATGGATGGGACCAA
GGTATCTATTTCCTTCATGCAAGCCACGTGGTCCGACGCGGTCAGCGCTG
CCGCTTGCGGGTCGCGGTAATACAGGACCAACTGTCTTTCAAGCTGGTGG
ACGGCGACACCATTCAATCATCTTCGCAGTCGTCCTCCCCCTCTTCCACT
TCCGTTCCCGTAGAAGTAGGAGAAATGGACATGTCCCACCTGAACGACAC
CCACCATATTCAGGCCTACCGGCAAGCCTTATATATCCTGACATCAAGGG
TAGAAAAGGATAGGCAGCCAATAACCGCAGTGGTAGAATGGAGCGGGAAT
TATTCTGTTTTAGGATTCGTAGCTGCCAGCGTACCTACCCTCCAGTCTGC
CCCTGTAACGATTGTGACGGGAAATGAGGATTCCGCCGCGGCTCTTCGGA
CTTGGGGCCAGCAAGGCTCAGACACACCTTTGTGTTCCGTTCACGTCATA
TCCAGCATCGATGACAAGACAGGCTCGAAGCTTATGAAACTGTTGCCGCA
GGCGCTATTCTTTCCTCCCGATCAGAATTCTGAGAGAGCTGCGCCTCCCA
GTCACCACGTGCTCGTGATTCATGACCTCGTAGAATGCTCGGGATGGCTC
CGGCAAGGTGCTATACAAGAAGCACGTCTGCTACAAAGCGTACTAAATGC
ATCGACAGCAACGACAACGGCTTCGTTGCTACCCGTCGCCGTCTCTGTCT
TCGTACAGGGGCTGGAGGCCCCCGCACTTTTAAGACAGAACCGATTGGAG
CCTGAGAATCTGTTAGGGTTTCCCGCAGGGCGATTACTGGATGGATTGGG
CGTACGAAAATTTCAAGGGCTTGATTTGAATAATACAGTCGAGCATCGAC
CCGTGACTGCTATAACGAGGGCCTTTCGAGTGGACATGCGAAGCCTTATC
GGTACTTCACGTCAGTGTGAGGAGGAGAAAAAGGACTTGAAGGAGGTTGT
GGCTCGCTCACGGGTGGAGCTGCCTGTGACGGTAGCGGCACCCGGAGCTA
CGCTGCACGCGGTGAGCTTCTGGTTTTCCCTACACCTGACGACTCCACGG
ACTGACGGAGGCAACAAAAATGACGACGGAGTGACGTTTAACACGGGCCC
GACGGGCCCAGGCCAGGAAGAAACTTCCTACAGACAAGGGGCTATTCTAG
TGGGTGCCATATCGATAGTGGCAGGACAACTTATCGAGCTGGAAGTGGTC
TGGAGTGTAAGCCGTGGAATCGATATGGTTGTACTGGGAATAGTTTAG

protein sequence of jgi.p|Nanoce1779_2|564065

>mRNA_2531-protein ID=mRNA_2531-protein|Name=jgi.p|Nanoce1779_2|564065|organism=Nannochloropsis oceanica|type=polypeptide|length=866bp
MSSSSSSSSSDTIRLLPAHANILASVQEARAAWRGRRDAAAAAQGFLRIV
QEVPSLLRELEVELGESLGAYANELYQEGAMPTALWLMDNATRSMPSSKI
LAYEQGCLFFRARQYLPALDAFQRALRIDPGYFAALDALENIKNLSLDRW
HFRMLNDLNRNTTYQLALRRVLLEETIRLGRAPKVMDIGTGTGLLAYLAI
EAGAGKVIACETNPVLCAVASDLLCTKEDRVQILNQSSYDIQLDGPVDVV
VTELVDSGLLGEHVLPVLRHARKHMLRPGGRVIPHAAVVYARVIESTEVR
RRSRLLKVDGVKSSWWGGRDSGCEELSEGGRNSKSSSDGSTNKNNDENKN
SLPNVRVDETYTCESLTTLQHRCLTEAVAVIEIPLSHPPARANDASDASL
TEDINLEVIADGQADAVAMWFDLILLPSDVEADRCAFSTDPERKGNGWDQ
GIYFLHASHVVRRGQRCRLRVAVIQDQLSFKLVDGDTIQSSSQSSSPSST
SVPVEVGEMDMSHLNDTHHIQAYRQALYILTSRVEKDRQPITAVVEWSGN
YSVLGFVAASVPTLQSAPVTIVTGNEDSAAALRTWGQQGSDTPLCSVHVI
SSIDDKTGSKLMKLLPQALFFPPDQNSERAAPPSHHVLVIHDLVECSGWL
RQGAIQEARLLQSVLNASTATTTASLLPVAVSVFVQGLEAPALLRQNRLE
PENLLGFPAGRLLDGLGVRKFQGLDLNNTVEHRPVTAITRAFRVDMRSLI
GTSRQCEEEKKDLKEVVARSRVELPVTVAAPGATLHAVSFWFSLHLTTPR
TDGGNKNDDGVTFNTGPTGPGQEETSYRQGAILVGAISIVAGQLIELEVV
WSVSRGIDMVVLGIV*

mRNA from alignment at scaffold_5:577231..579828+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2531 ID=mRNA_2531|Name=jgi.p|Nanoce1779_2|564065|organism=Nannochloropsis oceanica|type=mRNA|length=2598bp|location=Sequence derived from alignment at scaffold_5:577231..579828+ (Nannochloropsis oceanica)
ATGTCCTCCTCCTCCTCCTCCTCCTCTTCCGACACGATTCGTTTATTGCC
TGCGCACGCCAACATTTTGGCATCGGTCCAAGAGGCCCGGGCGGCATGGC
GGGGGCGACGTGATGCAGCGGCGGCGGCTCAAGGATTTTTACGCATCGTA
CAGGAAGTGCCTAGCCTATTACGGGAGCTTGAGGTCGAGCTGGGTGAATC
GCTCGGGGCTTACGCGAATGAATTGTATCAAGAGGGCGCCATGCCCACAG
CGTTGTGGTTGATGGATAATGCCACACGCAGCATGCCAAGCTCTAAGATT
CTGGCGTACGAGCAAGGTTGCCTCTTCTTTCGTGCCCGTCAATATCTGCC
TGCCCTTGACGCCTTCCAGCGAGCCCTGCGCATTGATCCGGGGTATTTTG
CGGCTTTAGATGCACTCGAAAACATTAAAAATTTGTCTTTGGATCGGTGG
CACTTCAGGATGCTCAACGATCTGAATCGCAACACTACGTATCAACTAGC
TCTACGTCGCGTCCTTTTGGAAGAGACGATTCGGCTTGGGCGTGCACCAA
AGGTAATGGACATTGGGACAGGCACAGGGTTGCTTGCCTATTTAGCAATT
GAAGCTGGTGCGGGCAAGGTGATAGCCTGCGAGACTAACCCTGTGCTGTG
CGCCGTGGCCTCTGACCTTTTATGCACGAAAGAGGACCGTGTTCAGATCT
TGAACCAGTCGTCGTATGACATACAGCTTGACGGGCCTGTGGACGTGGTT
GTGACCGAGCTAGTGGATTCAGGCCTGCTCGGCGAACACGTTCTGCCCGT
GCTGCGGCACGCCCGGAAGCATATGTTACGGCCCGGAGGGCGAGTTATTC
CGCACGCGGCCGTGGTATATGCTAGGGTCATTGAGTCGACTGAGGTTAGA
CGGCGCTCGCGTTTGTTGAAGGTGGATGGGGTAAAAAGCTCGTGGTGGGG
AGGGAGAGATAGTGGATGCGAGGAATTAAGTGAAGGTGGGAGAAATTCTA
AGAGCAGCAGCGACGGGAGCACCAACAAAAACAACGACGAAAACAAAAAT
TCACTTCCCAACGTCAGGGTAGACGAAACCTATACTTGCGAGTCCCTTAC
TACTCTGCAGCATCGATGTCTGACCGAAGCTGTGGCCGTGATTGAGATTC
CCCTCTCGCACCCACCGGCTCGAGCAAATGACGCATCGGACGCCTCCCTA
ACTGAGGATATAAATCTGGAAGTGATCGCCGATGGACAGGCAGATGCGGT
GGCCATGTGGTTCGATTTAATCTTGCTTCCTTCTGATGTTGAGGCAGACA
GGTGTGCCTTCTCAACAGACCCCGAGCGTAAAGGAAATGGATGGGACCAA
GGTATCTATTTCCTTCATGCAAGCCACGTGGTCCGACGCGGTCAGCGCTG
CCGCTTGCGGGTCGCGGTAATACAGGACCAACTGTCTTTCAAGCTGGTGG
ACGGCGACACCATTCAATCATCTTCGCAGTCGTCCTCCCCCTCTTCCACT
TCCGTTCCCGTAGAAGTAGGAGAAATGGACATGTCCCACCTGAACGACAC
CCACCATATTCAGGCCTACCGGCAAGCCTTATATATCCTGACATCAAGGG
TAGAAAAGGATAGGCAGCCAATAACCGCAGTGGTAGAATGGAGCGGGAAT
TATTCTGTTTTAGGATTCGTAGCTGCCAGCGTACCTACCCTCCAGTCTGC
CCCTGTAACGATTGTGACGGGAAATGAGGATTCCGCCGCGGCTCTTCGGA
CTTGGGGCCAGCAAGGCTCAGACACACCTTTGTGTTCCGTTCACGTCATA
TCCAGCATCGATGACAAGACAGGCTCGAAGCTTATGAAACTGTTGCCGCA
GGCGCTATTCTTTCCTCCCGATCAGAATTCTGAGAGAGCTGCGCCTCCCA
GTCACCACGTGCTCGTGATTCATGACCTCGTAGAATGCTCGGGATGGCTC
CGGCAAGGTGCTATACAAGAAGCACGTCTGCTACAAAGCGTACTAAATGC
ATCGACAGCAACGACAACGGCTTCGTTGCTACCCGTCGCCGTCTCTGTCT
TCGTACAGGGGCTGGAGGCCCCCGCACTTTTAAGACAGAACCGATTGGAG
CCTGAGAATCTGTTAGGGTTTCCCGCAGGGCGATTACTGGATGGATTGGG
CGTACGAAAATTTCAAGGGCTTGATTTGAATAATACAGTCGAGCATCGAC
CCGTGACTGCTATAACGAGGGCCTTTCGAGTGGACATGCGAAGCCTTATC
GGTACTTCACGTCAGTGTGAGGAGGAGAAAAAGGACTTGAAGGAGGTTGT
GGCTCGCTCACGGGTGGAGCTGCCTGTGACGGTAGCGGCACCCGGAGCTA
CGCTGCACGCGGTGAGCTTCTGGTTTTCCCTACACCTGACGACTCCACGG
ACTGACGGAGGCAACAAAAATGACGACGGAGTGACGTTTAACACGGGCCC
GACGGGCCCAGGCCAGGAAGAAACTTCCTACAGACAAGGGGCTATTCTAG
TGGGTGCCATATCGATAGTGGCAGGACAACTTATCGAGCTGGAAGTGGTC
TGGAGTGTAAGCCGTGGAATCGATATGGTTGTACTGGGAATAGTTTAG

Coding sequence (CDS) from alignment at scaffold_5:577231..579828+

>mRNA_2531 ID=mRNA_2531|Name=jgi.p|Nanoce1779_2|564065|organism=Nannochloropsis oceanica|type=CDS|length=2598bp|location=Sequence derived from alignment at scaffold_5:577231..579828+ (Nannochloropsis oceanica)
ATGTCCTCCTCCTCCTCCTCCTCCTCTTCCGACACGATTCGTTTATTGCC
TGCGCACGCCAACATTTTGGCATCGGTCCAAGAGGCCCGGGCGGCATGGC
GGGGGCGACGTGATGCAGCGGCGGCGGCTCAAGGATTTTTACGCATCGTA
CAGGAAGTGCCTAGCCTATTACGGGAGCTTGAGGTCGAGCTGGGTGAATC
GCTCGGGGCTTACGCGAATGAATTGTATCAAGAGGGCGCCATGCCCACAG
CGTTGTGGTTGATGGATAATGCCACACGCAGCATGCCAAGCTCTAAGATT
CTGGCGTACGAGCAAGGTTGCCTCTTCTTTCGTGCCCGTCAATATCTGCC
TGCCCTTGACGCCTTCCAGCGAGCCCTGCGCATTGATCCGGGGTATTTTG
CGGCTTTAGATGCACTCGAAAACATTAAAAATTTGTCTTTGGATCGGTGG
CACTTCAGGATGCTCAACGATCTGAATCGCAACACTACGTATCAACTAGC
TCTACGTCGCGTCCTTTTGGAAGAGACGATTCGGCTTGGGCGTGCACCAA
AGGTAATGGACATTGGGACAGGCACAGGGTTGCTTGCCTATTTAGCAATT
GAAGCTGGTGCGGGCAAGGTGATAGCCTGCGAGACTAACCCTGTGCTGTG
CGCCGTGGCCTCTGACCTTTTATGCACGAAAGAGGACCGTGTTCAGATCT
TGAACCAGTCGTCGTATGACATACAGCTTGACGGGCCTGTGGACGTGGTT
GTGACCGAGCTAGTGGATTCAGGCCTGCTCGGCGAACACGTTCTGCCCGT
GCTGCGGCACGCCCGGAAGCATATGTTACGGCCCGGAGGGCGAGTTATTC
CGCACGCGGCCGTGGTATATGCTAGGGTCATTGAGTCGACTGAGGTTAGA
CGGCGCTCGCGTTTGTTGAAGGTGGATGGGGTAAAAAGCTCGTGGTGGGG
AGGGAGAGATAGTGGATGCGAGGAATTAAGTGAAGGTGGGAGAAATTCTA
AGAGCAGCAGCGACGGGAGCACCAACAAAAACAACGACGAAAACAAAAAT
TCACTTCCCAACGTCAGGGTAGACGAAACCTATACTTGCGAGTCCCTTAC
TACTCTGCAGCATCGATGTCTGACCGAAGCTGTGGCCGTGATTGAGATTC
CCCTCTCGCACCCACCGGCTCGAGCAAATGACGCATCGGACGCCTCCCTA
ACTGAGGATATAAATCTGGAAGTGATCGCCGATGGACAGGCAGATGCGGT
GGCCATGTGGTTCGATTTAATCTTGCTTCCTTCTGATGTTGAGGCAGACA
GGTGTGCCTTCTCAACAGACCCCGAGCGTAAAGGAAATGGATGGGACCAA
GGTATCTATTTCCTTCATGCAAGCCACGTGGTCCGACGCGGTCAGCGCTG
CCGCTTGCGGGTCGCGGTAATACAGGACCAACTGTCTTTCAAGCTGGTGG
ACGGCGACACCATTCAATCATCTTCGCAGTCGTCCTCCCCCTCTTCCACT
TCCGTTCCCGTAGAAGTAGGAGAAATGGACATGTCCCACCTGAACGACAC
CCACCATATTCAGGCCTACCGGCAAGCCTTATATATCCTGACATCAAGGG
TAGAAAAGGATAGGCAGCCAATAACCGCAGTGGTAGAATGGAGCGGGAAT
TATTCTGTTTTAGGATTCGTAGCTGCCAGCGTACCTACCCTCCAGTCTGC
CCCTGTAACGATTGTGACGGGAAATGAGGATTCCGCCGCGGCTCTTCGGA
CTTGGGGCCAGCAAGGCTCAGACACACCTTTGTGTTCCGTTCACGTCATA
TCCAGCATCGATGACAAGACAGGCTCGAAGCTTATGAAACTGTTGCCGCA
GGCGCTATTCTTTCCTCCCGATCAGAATTCTGAGAGAGCTGCGCCTCCCA
GTCACCACGTGCTCGTGATTCATGACCTCGTAGAATGCTCGGGATGGCTC
CGGCAAGGTGCTATACAAGAAGCACGTCTGCTACAAAGCGTACTAAATGC
ATCGACAGCAACGACAACGGCTTCGTTGCTACCCGTCGCCGTCTCTGTCT
TCGTACAGGGGCTGGAGGCCCCCGCACTTTTAAGACAGAACCGATTGGAG
CCTGAGAATCTGTTAGGGTTTCCCGCAGGGCGATTACTGGATGGATTGGG
CGTACGAAAATTTCAAGGGCTTGATTTGAATAATACAGTCGAGCATCGAC
CCGTGACTGCTATAACGAGGGCCTTTCGAGTGGACATGCGAAGCCTTATC
GGTACTTCACGTCAGTGTGAGGAGGAGAAAAAGGACTTGAAGGAGGTTGT
GGCTCGCTCACGGGTGGAGCTGCCTGTGACGGTAGCGGCACCCGGAGCTA
CGCTGCACGCGGTGAGCTTCTGGTTTTCCCTACACCTGACGACTCCACGG
ACTGACGGAGGCAACAAAAATGACGACGGAGTGACGTTTAACACGGGCCC
GACGGGCCCAGGCCAGGAAGAAACTTCCTACAGACAAGGGGCTATTCTAG
TGGGTGCCATATCGATAGTGGCAGGACAACTTATCGAGCTGGAAGTGGTC
TGGAGTGTAAGCCGTGGAATCGATATGGTTGTACTGGGAATAGTTTAG

Synonyms

Publications