jgi.p|Nanoce1779_2|576708, mRNA_253 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576708
Unique Name	mRNA_253
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2090
Alignment location	scaffold_3:629586..631812 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576794
Track	FilteredModels2
ProteinId	576708

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:629586..631812 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576708	gene_253	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576708	mRNA_253-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_253	CDS_253	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:629586..631812+
coding sequence from alignment at scaffold_3:629586..631812+

mRNA sequence

>mRNA_253 ID=mRNA_253|Name=jgi.p|Nanoce1779_2|576708|organism=Nannochloropsis oceanica|type=mRNA|length=2090bp
ACAGCCCCTAGCCCTCGTGTCTGCTCCATATGTCAACCGTCCATCCTGAG
CTGAAAGAGCTGCTTGGTCAGACGCCATCAGAGCTAACGGACAAGCTAGA
AGAGCAGACGCTGGTACTTCTTCAGGCCCTAATTCGCAACGCCTGTGTCA
ACCGCGGGGATGGGGAATGCCAGGAGATCAAAAACATCCAGACACTTGCT
GCCTTCCTCGACAAATATGGCTTGCCATATCAAATTCATCATCCTTCCAA
CCGTCCCAACCGTCCCAGTCTCATAGCTGAGTATCGTGGAGACGGAGGCG
AAGGGCCGCGTCTCATGCTTGGGCCTGCGCATGTCGATGTGGTGCCCGTG
AATGAGGCAGCGTGGAAAGTGCCACCGTTCGAAGGGCGGGTTGTGAATGG
GGAACTATGGGGCCGCGGAGCAATTGACATGTTAAACACCGTGGCAGCAC
AGGCTGTTGCATTTGCTTGCTTGGCCACTTCCCGTGTCCCGCTGCGTGGC
ACCCTCTTGTTTTGTGCCGTGTCGGATGAGGAGGCGGGAGGAGCTGATGG
TGCAGCATTTTTAATGAAGGACCGCGTGCTCCGCGGCGTGTTCAAGTCTG
ACTATTGCATGACTGAGTTCGGCGGCGCCACGCTCATCGATCGAAATAGG
CGGCCTACTACCACCTACTTCCACGTTAACGGCGAGAAAGGAATGACGTC
TTTCGAGGTGCTTTGCAAGGGCACCCCCGGCCATGGCTCCCTCCCTCTAA
ACGGGGACAATGCATTGGTCAAAGCCGCAGGAGCAATCAAATGCCTGGCT
GATTACTGGGCGCCCACCATAATCACACCGGAATGGCGCAATGTTATTTC
TGCCTCCGATGCTCCGTGGATCGTTCGTGCTTGCTTGACAAGCACCTGGC
TTGCTCGGCCTTTTATCCGCTTTTTGCTGTGGCTAAAGCACCCGCTCGGC
CCGATCGCGCATGCCCTGACTCGCCTTACCATTAGCCCAAATCATCTGAC
GGGCACTCTTAAGAGTAATGTAGTTCCTGGCTCGGTAGCAATAGAGGTAG
ACGGACGGCTTATGCCTGGTCAGGATGAAGCGTATTTAGTCAAGCAGGTG
GAGAGGGCGTTGGGCAAGCGGCGCATGGCTTCAGGGGAGTACGAGATCAA
TATTAAACATTTTTTTCCCGCTACCACGAGCACGATCGACACGCCTTTGT
GGAGGGCAATGGAGAAGGCGGCGGGTGTACTTGTGCCTGGGGCGAAGTTT
GTATGTGGCTTGCTGACGGGTGCGACGGACTCGAGGTTTTTCCGGCGGGA
TTGTGGAGCGGTTGCGTATGGGACGTCATTGTTTTGCCCAACCTTGACAA
TGGATAGATTGGTAGAGATGATTCATGGAAACAACGAGCGGATTCCAATT
GAAAGTATTGGTATGTCGGTGCAGTATTTTGTCTTGACGAGTTTGTATAT
GCTTGGTGGGAGCGTGGAAGAAAGAGGAGAAGAAGAGGCCGCGAAAGACT
GACAAAACGGAATACATAGGTTGATGGATTAAAATATCGAGAGAGCAGAT
AAATCAAGGAGATTGTGATGTATGTTGCTTGCTGGTCTTTTGGTAGTTGA
CGATCGCGGAGGGAAAGTACGGAGAGGCGAACAACTTCTCTGCGCAGAAT
CCAGAGGACTGCTCAAAAACATGCTGAGAAGCGACTTCATCACCACCTCT
GGCGTGTGGAAGAAAGTCACACCGGGATGGAAATGTCTCCTTGGTATAGC
CTTGTTCGGAATCTGTAAGAAAGGCGGAATTTGACAACAGCAAATACCAA
ATTCGACCCCGGGCAAAATGTTTATGTTGAGTAGGACGCACAAAATGTCG
TGTCGGCTCTTCTTGTAAAATTTCGAGTCCATCTACATTGGGAACTGTTT
CCAACTTGTCCATAATCGTGCCCCCGCTCCTCCTCACCCCCCCTCACCCC
CCCCGCAAATGTTTAAGAAGCTTGGGGTAATGAATAAGGTAGAGAAGAGA
ATAAAAGTGGCAGAAAGGATCAGAAATTAAAGTGAAGAAAGAACTCGACA
AGGAAATGGAGTGAATGCAGCTTTTCAAAAGTCTGTGCTC

protein sequence of jgi.p|Nanoce1779_2|576708

>mRNA_253-protein ID=mRNA_253-protein|Name=jgi.p|Nanoce1779_2|576708|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MSTVHPELKELLGQTPSELTDKLEEQTLVLLQALIRNACVNRGDGECQEI
KNIQTLAAFLDKYGLPYQIHHPSNRPNRPSLIAEYRGDGGEGPRLMLGPA
HVDVVPVNEAAWKVPPFEGRVVNGELWGRGAIDMLNTVAAQAVAFACLAT
SRVPLRGTLLFCAVSDEEAGGADGAAFLMKDRVLRGVFKSDYCMTEFGGA
TLIDRNRRPTTTYFHVNGEKGMTSFEVLCKGTPGHGSLPLNGDNALVKAA
GAIKCLADYWAPTIITPEWRNVISASDAPWIVRACLTSTWLARPFIRFLL
WLKHPLGPIAHALTRLTISPNHLTGTLKSNVVPGSVAIEVDGRLMPGQDE
AYLVKQVERALGKRRMASGEYEINIKHFFPATTSTIDTPLWRAMEKAAGV
LVPGAKFVCGLLTGATDSRFFRRDCGAVAYGTSLFCPTLTMDRLVEMIHG
NNERIPIESIGMSVQYFVLTSLYMLGGSVEERGEEEAAKD*

mRNA from alignment at scaffold_3:629586..631812+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_253 ID=mRNA_253|Name=jgi.p|Nanoce1779_2|576708|organism=Nannochloropsis oceanica|type=mRNA|length=2227bp|location=Sequence derived from alignment at scaffold_3:629586..631812+ (Nannochloropsis oceanica)
ACAGCCCCTAGCCCTCGTGTCTGCTCCATATGTCAACCGTCCATCCTGAG
CTGAAAGAGCTGCTTGGTCAGACGCCATCAGAGCTAACGGACAAGCTAGA
AGAGCAGACGCTGGTACTTCTTCAGGCCCTAATTCGCAACGCCTGTGTCA
ACCGCGGGGATGGGGAATGCCAGGAGATCAAAAACATCCAGACACTTGCT
GCCTTCCTCGACAAATATGGCTTGCCATATCAAATTCATCATCCTTCCAA
CCGTCCCAACCGTCCCAGTCTCATAGCTGAGTATCGTGGAGACGGAGGCG
AAGGGCCGCGTCTCATGCTTGGGCCTGCGCATGTCGATGTGGTGCCCGTG
AATGAGGCAGCGTGGAAAGTGCCACCGTTCGAAGGGCGGGTTGTGAATGG
GGAACTATGGGGCCGCGGAGCAATTGACATGTTAAACACCGTGGCAGCAC
AGGCTGTTGCATTTGCTTGCTTGGCCACTTCCCGTGTCCCGCTGCGTGGC
ACCCTCTTGTTTTGTGCCGTGTCGGATGAGGAGGCGGGAGGAGCTGATGG
TGCAGCATTTTTAATGAAGGGTAAGAAAGAGGGGATTGGAGGAAGGGAGA
AGTAGTTTGGGAATGCGCTTGCTGCCGGGCATTGAACTGTTTCCTTCTCC
TCCTGGCTCATTAGCCTAAACCCTCACTCCTATCGTCCTACCAAAAAAAT
AAACTAGACCGCGTGCTCCGCGGCGTGTTCAAGTCTGACTATTGCATGAC
TGAGTTCGGCGGCGCCACGCTCATCGATCGAAATAGGCGGCCTACTACCA
CCTACTTCCACGTTAACGGCGAGAAAGGAATGACGTCTTTCGAGGTGCTT
TGCAAGGGCACCCCCGGCCATGGCTCCCTCCCTCTAAACGGGGACAATGC
ATTGGTCAAAGCCGCAGGAGCAATCAAATGCCTGGCTGATTACTGGGCGC
CCACCATAATCACACCGGAATGGCGCAATGTTATTTCTGCCTCCGATGCT
CCGTGGATCGTTCGTGCTTGCTTGACAAGCACCTGGCTTGCTCGGCCTTT
TATCCGCTTTTTGCTGTGGCTAAAGCACCCGCTCGGCCCGATCGCGCATG
CCCTGACTCGCCTTACCATTAGCCCAAATCATCTGACGGGCACTCTTAAG
AGTAATGTAGTTCCTGGCTCGGTAGCAATAGAGGTAGACGGACGGCTTAT
GCCTGGTCAGGATGAAGCGTATTTAGTCAAGCAGGTGGAGAGGGCGTTGG
GCAAGCGGCGCATGGCTTCAGGGGAGTACGAGATCAATATTAAACATTTT
TTTCCCGCTACCACGAGCACGATCGACACGCCTTTGTGGAGGGCAATGGA
GAAGGCGGCGGGTGTACTTGTGCCTGGGGCGAAGTTTGTATGTGGCTTGC
TGACGGGTGCGACGGACTCGAGGTTTTTCCGGCGGGATTGTGGAGCGGTT
GCGTATGGGACGTCATTGTTTTGCCCAACCTTGACAATGGATAGATTGGT
AGAGATGATTCATGGAAACAACGAGCGGATTCCAATTGAAAGTATTGGTA
TGTCGGTGCAGTATTTTGTCTTGACGAGTTTGTATATGCTTGGTGGGAGC
GTGGAAGAAAGAGGAGAAGAAGAGGCCGCGAAAGACTGACAAAACGGAAT
ACATAGGTTGATGGATTAAAATATCGAGAGAGCAGATAAATCAAGGAGAT
TGTGATGTATGTTGCTTGCTGGTCTTTTGGTAGTTGACGATCGCGGAGGG
AAAGTACGGAGAGGCGAACAACTTCTCTGCGCAGAATCCAGAGGACTGCT
CAAAAACATGCTGAGAAGCGACTTCATCACCACCTCTGGCGTGTGGAAGA
AAGTCACACCGGGATGGAAATGTCTCCTTGGTATAGCCTTGTTCGGAATC
TGTAAGAAAGGCGGAATTTGACAACAGCAAATACCAAATTCGACCCCGGG
CAAAATGTTTATGTTGAGTAGGACGCACAAAATGTCGTGTCGGCTCTTCT
TGTAAAATTTCGAGTCCATCTACATTGGGAACTGTTTCCAACTTGTCCAT
AATCGTGCCCCCGCTCCTCCTCACCCCCCCTCACCCCCCCCGCAAATGTT
TAAGAAGCTTGGGGTAATGAATAAGGTAGAGAAGAGAATAAAAGTGGCAG
AAAGGATCAGAAATTAAAGTGAAGAAAGAACTCGACAAGGAAATGGAGTG
AATGCAGCTTTTCAAAAGTCTGTGCTC

Coding sequence (CDS) from alignment at scaffold_3:629586..631812+

>mRNA_253 ID=mRNA_253|Name=jgi.p|Nanoce1779_2|576708|organism=Nannochloropsis oceanica|type=CDS|length=2946bp|location=Sequence derived from alignment at scaffold_3:629586..631812+ (Nannochloropsis oceanica)
ATGTCAACCGTCCATCCTGAGCTGAAAGAGCTGCTTGGTCAGACGCCATC
AGAGCTAACGGACAAGCTAGAAGAGCAGACGCTGGTACTTCTTCAGGCCC
TAATTCGCAACGCCTGTGTCAACCGCGGGGATGGGGAATGCCAGGAGATC
AAAAACATCCAGACACTTGCTGCCTTCCTCGACAAATATGGCTTGCCATA
TCAAATTCATCATCCTTCCAACCGTCCCAACCGTCCCAGTCTCATAGCTG
AGTATCGTGGAGACGGAGGCGAAGGGCCGCGTCTCATGCTTGGGCCTGCG
CATGTCGATGTGGTGCCCGTGAATGAGGCAGCGTGGAAAGTGCCACCGTT
CGAAGGGCGGGTTGTGAATGGGGAACTATGGGGCCGCGGAGCAATTGACA
TGTTAAACACCGTGGCAGCACAGGCTGTTGCATTTGCTTGCTTGGCCACT
TCCCGTGTCCCGCTGCGTGGCACCCTCTTGTTTTGTGCCGTGTCGGATGA
GGAGGCGGGAGGAGCTGATGGTGCAGCATTTTTAATGAAGGACCGCGTGC
TCCGCGGCGTGTTCAAGTCTGACTATTGCATGACTGAGTTCGGCGGCGCC
ACGCTCATCGATCGAAATAGGCGGCCTACTACCACCTACTTCCACGTTAA
CGGCGAGAAAGGAATGACGTCTTTCGAGGTGCTTTGCAAGGGCACCCCCG
GCCATGGCTCCCTCCCTCTAAACGGGGACAATGCATTGGTCAAAGCCGCA
GGAGCAATCAAATGCCTGGCTGATTACTGGGCGCCCACCATAATCACACC
GGAATGGCGCAATGTTATTTCTGCCTCCGATGCTCCGTGGATCGTTCGTG
CTTGCTTGACAAGCACCTGGCTTGCTCGGCCTTTTATCCGCTTTTTGCTG
TGGCTAAAGCACCCGCTCGGCCCGATCGCGCATGCCCTGACTCGCCTTAC
CATTAGCCCAAATCATCTGACGGGCACTCTTAAGAGTAATGTAGTTCCTG
GCTCGGTAGCAATAGAGGTAGACGGACGGCTTATGCCTGGTCAGGATGAA
GCGTATTTAGTCAAGCAGGTGGAGAGGGCGTTGGGCAAGCGGCGCATGGC
TTCAGGGGAGTACGAGATCAATATTAAACATTTTTTTCCCGCTACCACGA
GCACGATCGACACGCCTTTGTGGAGGGCAATGGAGAAGGCGGCGGGTGTA
CTTGTGCCTGGGGCGAAGTTTGTATGTGGCTTGCTGACGGGTGCGACGGA
CTCGAGGTTTTTCCGGCGGGATTGTGGAGCGGTTGCGTATGGGACGTCAT
TGTTTTGCCCAACCTTGACAATGGATAGATTGGTAGAGATGATTCATGGA
AACAACGAGCGGATTCCAATTGAAAGTATTGGTATGTCGGTGCAGTATTT
TGTCTTGACGAGTTTGTATATGCTTGGTGGGAGCGTGGAAGAAAGAGGAG
AAGAAGAGGCCGCGAAAGACTGAATGTCAACCGTCCATCCTGAGCTGAAA
GAGCTGCTTGGTCAGACGCCATCAGAGCTAACGGACAAGCTAGAAGAGCA
GACGCTGGTACTTCTTCAGGCCCTAATTCGCAACGCCTGTGTCAACCGCG
GGGATGGGGAATGCCAGGAGATCAAAAACATCCAGACACTTGCTGCCTTC
CTCGACAAATATGGCTTGCCATATCAAATTCATCATCCTTCCAACCGTCC
CAACCGTCCCAGTCTCATAGCTGAGTATCGTGGAGACGGAGGCGAAGGGC
CGCGTCTCATGCTTGGGCCTGCGCATGTCGATGTGGTGCCCGTGAATGAG
GCAGCGTGGAAAGTGCCACCGTTCGAAGGGCGGGTTGTGAATGGGGAACT
ATGGGGCCGCGGAGCAATTGACATGTTAAACACCGTGGCAGCACAGGCTG
TTGCATTTGCTTGCTTGGCCACTTCCCGTGTCCCGCTGCGTGGCACCCTC
TTGTTTTGTGCCGTGTCGGATGAGGAGGCGGGAGGAGCTGATGGTGCAGC
ATTTTTAATGAAGGACCGCGTGCTCCGCGGCGTGTTCAAGTCTGACTATT
GCATGACTGAGTTCGGCGGCGCCACGCTCATCGATCGAAATAGGCGGCCT
ACTACCACCTACTTCCACGTTAACGGCGAGAAAGGAATGACGTCTTTCGA
GGTGCTTTGCAAGGGCACCCCCGGCCATGGCTCCCTCCCTCTAAACGGGG
ACAATGCATTGGTCAAAGCCGCAGGAGCAATCAAATGCCTGGCTGATTAC
TGGGCGCCCACCATAATCACACCGGAATGGCGCAATGTTATTTCTGCCTC
CGATGCTCCGTGGATCGTTCGTGCTTGCTTGACAAGCACCTGGCTTGCTC
GGCCTTTTATCCGCTTTTTGCTGTGGCTAAAGCACCCGCTCGGCCCGATC
GCGCATGCCCTGACTCGCCTTACCATTAGCCCAAATCATCTGACGGGCAC
TCTTAAGAGTAATGTAGTTCCTGGCTCGGTAGCAATAGAGGTAGACGGAC
GGCTTATGCCTGGTCAGGATGAAGCGTATTTAGTCAAGCAGGTGGAGAGG
GCGTTGGGCAAGCGGCGCATGGCTTCAGGGGAGTACGAGATCAATATTAA
ACATTTTTTTCCCGCTACCACGAGCACGATCGACACGCCTTTGTGGAGGG
CAATGGAGAAGGCGGCGGGTGTACTTGTGCCTGGGGCGAAGTTTGTATGT
GGCTTGCTGACGGGTGCGACGGACTCGAGGTTTTTCCGGCGGGATTGTGG
AGCGGTTGCGTATGGGACGTCATTGTTTTGCCCAACCTTGACAATGGATA
GATTGGTAGAGATGATTCATGGAAACAACGAGCGGATTCCAATTGAAAGT
ATTGGTATGTCGGTGCAGTATTTTGTCTTGACGAGTTTGTATATGCTTGG
TGGGAGCGTGGAAGAAAGAGGAGAAGAAGAGGCCGCGAAAGACTGA

Synonyms

Publications