Properties
| Property Name | Value |
|---|
| TranscriptId | 580767 |
| Track | FilteredModels2 |
| ProteinId | 580681 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:568448..569818 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2529 ID=mRNA_2529|Name=jgi.p|Nanoce1779_2|580681|organism=Nannochloropsis oceanica|type=mRNA|length=1371bp
AGTGGGTGGCAGACTCATGGATAAAAAAGATTTCATCGAGACCCAGCATG
GACTCTCTCCGAAATAATTATTTACTGATAAAACTTAAACGGCGGAGCAT
CTGAGATGAGGTCGTCATCTGTCTCCATCGTGCCCCCCACATGGCCAGCT
CACACTCGCGTAGACTCACATGTCCTGTATCCTTCCCGACGCCCTACACA
GCCATGACCACCACCACCACAGCACTTTTACGCCTCCGCTACATTGCTTC
CACCAATACTCAAGCGAACGCAATTTGCGAAGAGCTTGCCTTGGCTCTCC
GCCTGTCTACATCTCAGGCCTCCTCCTCTAATGCATCGCCCCACTCTTGT
CTGCAATTGGGTAATGCATTGCTTGAATTTACGCCCTTGCCTCTTTGGAT
GACTTTGGCCAGACATTCAACCATGCTGAAGCGCCCACAAGTGGCGCGGC
TGTGTGGTATTGATGTTTTCACAAATTCCGCTATCATGACCCCTGCCCCC
TTGTCTTCTTCATACCACGACGCGCGGGCTTGGCTACTCGAGGACCGACC
CATAGTCACCCCAACAGTGCGTACCGTTCCTTCGACCAGCAGCGTATCCT
TGGCTTCCACCATGAGTCCGCAAGTACGAGAAATCGTGCTAGGGGCGGGT
GCGAATTTGGCCGAGCTGGCCAGCATCATCACGGATGAAGTCGGTGCTCA
TCCATGCCCAGGCCTGCCACATGTCTATGCTTTACACGACGGAATGAAGG
GCAATAGTGCAGGTAATAAAGCACCCTTAAATGCCAACAGCATCATTGAC
GCCCCGGGCTTCCTCAAGCAGGCGCAATCACCGCAGCAGCAGCATTCCTC
CCTGTCACTCCAACGCAACAGCATCGCCTTACGCCTTCTACACTCGCCCA
TGTCAGCATTGGTCCTTCAGGTAGAATCAGGTGGGCTGGCTGCAGCCAAG
GAGGATCTGTGGCATCGTGGAGTAAAGTTTGAGGAGATAGGAGGCACGGG
TGCGGCAGAGGGACAGATTTTGCTTTCCTCTCCGCATTTGCATGGCTTGG
ATGTACGGATCTGTGATGGTGAGGCAGCTCTTTCTCCTTTTTTCAACGAG
GGAGATGAGGTCCTGTGCGAGCACGTACTTGAGGAGCTGAATCCTGCAAT
TTCCAAATCGCTGGCCGCCGTGGGGGAAGGTTGGAAGCAAGCCTCATCAC
CCGCCGCGGCGTACCGACAAATGGGAACGGGTATGGGGGACTGCTGGTCG
GAGTTCCGCTCTCAATTGAAGCGGCCTGGGGGGTTCTTCATGTCTTCCTC
ATCATCGTTTGGGTCCTCTTCAAAGTGAAAGGAATTGGATCGAGAAAAGG
AAGATTTTCGGAAACAAGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|580681 >mRNA_2529-protein ID=mRNA_2529-protein|Name=jgi.p|Nanoce1779_2|580681|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MASSHSRRLTCPVSFPTPYTAMTTTTTALLRLRYIASTNTQANAICEELA
LALRLSTSQASSSNASPHSCLQLGNALLEFTPLPLWMTLARHSTMLKRPQ
VARLCGIDVFTNSAIMTPAPLSSSYHDARAWLLEDRPIVTPTVRTVPSTS
SVSLASTMSPQVREIVLGAGANLAELASIITDEVGAHPCPGLPHVYALHD
GMKGNSAGNKAPLNANSIIDAPGFLKQAQSPQQQHSSLSLQRNSIALRLL
HSPMSALVLQVESGGLAAAKEDLWHRGVKFEEIGGTGAAEGQILLSSPHL
HGLDVRICDGEAALSPFFNEGDEVLCEHVLEELNPAISKSLAAVGEGWKQ
ASSPAAAYRQMGTGMGDCWSEFRSQLKRPGGFFMSSSSSFGSSSK* back to topmRNA from alignment at scaffold_5:568448..569818- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2529 ID=mRNA_2529|Name=jgi.p|Nanoce1779_2|580681|organism=Nannochloropsis oceanica|type=mRNA|length=1371bp|location=Sequence derived from alignment at scaffold_5:568448..569818- (Nannochloropsis oceanica)
AGTGGGTGGCAGACTCATGGATAAAAAAGATTTCATCGAGACCCAGCATG
GACTCTCTCCGAAATAATTATTTACTGATAAAACTTAAACGGCGGAGCAT
CTGAGATGAGGTCGTCATCTGTCTCCATCGTGCCCCCCACATGGCCAGCT
CACACTCGCGTAGACTCACATGTCCTGTATCCTTCCCGACGCCCTACACA
GCCATGACCACCACCACCACAGCACTTTTACGCCTCCGCTACATTGCTTC
CACCAATACTCAAGCGAACGCAATTTGCGAAGAGCTTGCCTTGGCTCTCC
GCCTGTCTACATCTCAGGCCTCCTCCTCTAATGCATCGCCCCACTCTTGT
CTGCAATTGGGTAATGCATTGCTTGAATTTACGCCCTTGCCTCTTTGGAT
GACTTTGGCCAGACATTCAACCATGCTGAAGCGCCCACAAGTGGCGCGGC
TGTGTGGTATTGATGTTTTCACAAATTCCGCTATCATGACCCCTGCCCCC
TTGTCTTCTTCATACCACGACGCGCGGGCTTGGCTACTCGAGGACCGACC
CATAGTCACCCCAACAGTGCGTACCGTTCCTTCGACCAGCAGCGTATCCT
TGGCTTCCACCATGAGTCCGCAAGTACGAGAAATCGTGCTAGGGGCGGGT
GCGAATTTGGCCGAGCTGGCCAGCATCATCACGGATGAAGTCGGTGCTCA
TCCATGCCCAGGCCTGCCACATGTCTATGCTTTACACGACGGAATGAAGG
GCAATAGTGCAGGTAATAAAGCACCCTTAAATGCCAACAGCATCATTGAC
GCCCCGGGCTTCCTCAAGCAGGCGCAATCACCGCAGCAGCAGCATTCCTC
CCTGTCACTCCAACGCAACAGCATCGCCTTACGCCTTCTACACTCGCCCA
TGTCAGCATTGGTCCTTCAGGTAGAATCAGGTGGGCTGGCTGCAGCCAAG
GAGGATCTGTGGCATCGTGGAGTAAAGTTTGAGGAGATAGGAGGCACGGG
TGCGGCAGAGGGACAGATTTTGCTTTCCTCTCCGCATTTGCATGGCTTGG
ATGTACGGATCTGTGATGGTGAGGCAGCTCTTTCTCCTTTTTTCAACGAG
GGAGATGAGGTCCTGTGCGAGCACGTACTTGAGGAGCTGAATCCTGCAAT
TTCCAAATCGCTGGCCGCCGTGGGGGAAGGTTGGAAGCAAGCCTCATCAC
CCGCCGCGGCGTACCGACAAATGGGAACGGGTATGGGGGACTGCTGGTCG
GAGTTCCGCTCTCAATTGAAGCGGCCTGGGGGGTTCTTCATGTCTTCCTC
ATCATCGTTTGGGTCCTCTTCAAAGTGAAAGGAATTGGATCGAGAAAAGG
AAGATTTTCGGAAACAAGGAG back to topCoding sequence (CDS) from alignment at scaffold_5:568448..569818- >mRNA_2529 ID=mRNA_2529|Name=jgi.p|Nanoce1779_2|580681|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_5:568448..569818- (Nannochloropsis oceanica)
ATGGCCAGCTCACACTCGCGTAGACTCACATGTCCTGTATCCTTCCCGAC
GCCCTACACAGCCATGACCACCACCACCACAGCACTTTTACGCCTCCGCT
ACATTGCTTCCACCAATACTCAAGCGAACGCAATTTGCGAAGAGCTTGCC
TTGGCTCTCCGCCTGTCTACATCTCAGGCCTCCTCCTCTAATGCATCGCC
CCACTCTTGTCTGCAATTGGGTAATGCATTGCTTGAATTTACGCCCTTGC
CTCTTTGGATGACTTTGGCCAGACATTCAACCATGCTGAAGCGCCCACAA
GTGGCGCGGCTGTGTGGTATTGATGTTTTCACAAATTCCGCTATCATGAC
CCCTGCCCCCTTGTCTTCTTCATACCACGACGCGCGGGCTTGGCTACTCG
AGGACCGACCCATAGTCACCCCAACAGTGCGTACCGTTCCTTCGACCAGC
AGCGTATCCTTGGCTTCCACCATGAGTCCGCAAGTACGAGAAATCGTGCT
AGGGGCGGGTGCGAATTTGGCCGAGCTGGCCAGCATCATCACGGATGAAG
TCGGTGCTCATCCATGCCCAGGCCTGCCACATGTCTATGCTTTACACGAC
GGAATGAAGGGCAATAGTGCAGGTAATAAAGCACCCTTAAATGCCAACAG
CATCATTGACGCCCCGGGCTTCCTCAAGCAGGCGCAATCACCGCAGCAGC
AGCATTCCTCCCTGTCACTCCAACGCAACAGCATCGCCTTACGCCTTCTA
CACTCGCCCATGTCAGCATTGGTCCTTCAGGTAGAATCAGGTGGGCTGGC
TGCAGCCAAGGAGGATCTGTGGCATCGTGGAGTAAAGTTTGAGGAGATAG
GAGGCACGGGTGCGGCAGAGGGACAGATTTTGCTTTCCTCTCCGCATTTG
CATGGCTTGGATGTACGGATCTGTGATGGTGAGGCAGCTCTTTCTCCTTT
TTTCAACGAGGGAGATGAGGTCCTGTGCGAGCACGTACTTGAGGAGCTGA
ATCCTGCAATTTCCAAATCGCTGGCCGCCGTGGGGGAAGGTTGGAAGCAA
GCCTCATCACCCGCCGCGGCGTACCGACAAATGGGAACGGGTATGGGGGA
CTGCTGGTCGGAGTTCCGCTCTCAATTGAAGCGGCCTGGGGGGTTCTTCA
TGTCTTCCTCATCATCGTTTGGGTCCTCTTCAAAGTGA back to top
|