jgi.p|Nanoce1779_2|580668, mRNA_2525 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580668
Unique NamemRNA_2525
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1083
Alignment locationscaffold_5:560393..561475 -

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Properties
Property NameValue
TranscriptId580754
TrackFilteredModels2
ProteinId580668
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:560393..561475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580668gene_2525Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580668mRNA_2525-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2525CDS_2525Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2525 ID=mRNA_2525|Name=jgi.p|Nanoce1779_2|580668|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp
TGTGAAATATGTATTTCTTTATTTCCTTCTCTGTGTCGCTTTCCTTCCGC
ATATTCCTTTTTTCACTTGTCTCTTTGTTTGTTGAACGATAATTAGATCG
TAAGACACTTATTTTTCTCTTCTATTATTGTGCTTCTAAATGTTTTCGAT
CTCACCCCTCTCACCGTCTCCATTCCTCCTGCATCATAAACCTTTGCGTC
ATCCAAGCGCTATCGATTCGTATACTTTAGGCATCTTCTATGCACGGAGA
TATGATCAGATAAAGAATTTAAGTGGTACAAACACCACGAAGCACAGGAC
ATGGACCTACCCTACAGTGGTGATTTTTGTGTTTCTGCCCATTTCATTAT
TATCACACACAAACACCAGCCCTCACCCCCCCCTTCACAAAATTGCACAG
GCCCTACTGATGCCGCAGCGTTTGCTTATTATTATTTACAGAAAAGGGAG
ATGGGGGGGGATACTCCACAAGCGTGGTCGCTCTATCGAAAGAAGATTAT
GTGGGGAGGAAGGGTGCCCTGCACACACACTCAGTGAAAATGATTTACGA
AGAAAGGAAAACATCATTATATCACACGCACAATGGCGAGAAACGATCAT
AACAAAAGCCATTTCTCTACTGCTGCCGCAATATATTCAGGTGCTTCAAT
TCCGCCACGACTGACTAACGGCAAGCATTGCTTGCCCAAAATACGGCATT
TCGTTCAAAATTATCACACGAATCACTCCTCTGATCATCCGGCCCCAGAC
CCGCCATCAGATCCACATACAAGCGATGTGCTGTTAGGCCCAGTCAGACC
ACCTGTCTACCGCTAGAGGTGGTAAGGAGCGGGCTGCCCCGAACACTGGT
GGTGGTGTCCAACTCGCTGGCGCGAGGCTTCAAGCCGCTTCGGAGGCCAC
CCGCCACCGCTGTTTGTTGCGACAACGTGTCCCCGGAGGCGTGCACTTGG
TTCCCAAACACGTGAAGGGTGCAGACGCAGACCAGGAGGAAAGTGGTGGC
GGCGACCTTCTGGGGTTAGTGCTACCGGGGATGTTCTCCGTAAATGTGCC
ATTATGAAGTCTTGGCGTATGAAGGGATCCTGT
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protein sequence of jgi.p|Nanoce1779_2|580668

>mRNA_2525-protein ID=mRNA_2525-protein|Name=jgi.p|Nanoce1779_2|580668|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MFSISPLSPSPFLLHHKPLRHPSAIDSYTLGIFYARRYDQIKNLSGTNTT
KHRTWTYPTVVIFVFLPISLLSHTNTSPHPPLHKIAQALLMPQRLLIIIY
RKGRWGGILHKRGRSIERRLCGEEGCPAHTLSENDLRRKENIIISHAQWR
ETIITKAISLLLPQYIQVLQFRHD*
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mRNA from alignment at scaffold_5:560393..561475-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2525 ID=mRNA_2525|Name=jgi.p|Nanoce1779_2|580668|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp|location=Sequence derived from alignment at scaffold_5:560393..561475- (Nannochloropsis oceanica)
TGTGAAATATGTATTTCTTTATTTCCTTCTCTGTGTCGCTTTCCTTCCGC
ATATTCCTTTTTTCACTTGTCTCTTTGTTTGTTGAACGATAATTAGATCG
TAAGACACTTATTTTTCTCTTCTATTATTGTGCTTCTAAATGTTTTCGAT
CTCACCCCTCTCACCGTCTCCATTCCTCCTGCATCATAAACCTTTGCGTC
ATCCAAGCGCTATCGATTCGTATACTTTAGGCATCTTCTATGCACGGAGA
TATGATCAGATAAAGAATTTAAGTGGTACAAACACCACGAAGCACAGGAC
ATGGACCTACCCTACAGTGGTGATTTTTGTGTTTCTGCCCATTTCATTAT
TATCACACACAAACACCAGCCCTCACCCCCCCCTTCACAAAATTGCACAG
GCCCTACTGATGCCGCAGCGTTTGCTTATTATTATTTACAGAAAAGGGAG
ATGGGGGGGGATACTCCACAAGCGTGGTCGCTCTATCGAAAGAAGATTAT
GTGGGGAGGAAGGGTGCCCTGCACACACACTCAGTGAAAATGATTTACGA
AGAAAGGAAAACATCATTATATCACACGCACAATGGCGAGAAACGATCAT
AACAAAAGCCATTTCTCTACTGCTGCCGCAATATATTCAGGTGCTTCAAT
TCCGCCACGACTGACTAACGGCAAGCATTGCTTGCCCAAAATACGGCATT
TCGTTCAAAATTATCACACGAATCACTCCTCTGATCATCCGGCCCCAGAC
CCGCCATCAGATCCACATACAAGCGATGTGCTGTTAGGCCCAGTCAGACC
ACCTGTCTACCGCTAGAGGTGGTAAGGAGCGGGCTGCCCCGAACACTGGT
GGTGGTGTCCAACTCGCTGGCGCGAGGCTTCAAGCCGCTTCGGAGGCCAC
CCGCCACCGCTGTTTGTTGCGACAACGTGTCCCCGGAGGCGTGCACTTGG
TTCCCAAACACGTGAAGGGTGCAGACGCAGACCAGGAGGAAAGTGGTGGC
GGCGACCTTCTGGGGTTAGTGCTACCGGGGATGTTCTCCGTAAATGTGCC
ATTATGAAGTCTTGGCGTATGAAGGGATCCTGT
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Coding sequence (CDS) from alignment at scaffold_5:560393..561475-

>mRNA_2525 ID=mRNA_2525|Name=jgi.p|Nanoce1779_2|580668|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at scaffold_5:560393..561475- (Nannochloropsis oceanica)
ATGTTTTCGATCTCACCCCTCTCACCGTCTCCATTCCTCCTGCATCATAA
ACCTTTGCGTCATCCAAGCGCTATCGATTCGTATACTTTAGGCATCTTCT
ATGCACGGAGATATGATCAGATAAAGAATTTAAGTGGTACAAACACCACG
AAGCACAGGACATGGACCTACCCTACAGTGGTGATTTTTGTGTTTCTGCC
CATTTCATTATTATCACACACAAACACCAGCCCTCACCCCCCCCTTCACA
AAATTGCACAGGCCCTACTGATGCCGCAGCGTTTGCTTATTATTATTTAC
AGAAAAGGGAGATGGGGGGGGATACTCCACAAGCGTGGTCGCTCTATCGA
AAGAAGATTATGTGGGGAGGAAGGGTGCCCTGCACACACACTCAGTGAAA
ATGATTTACGAAGAAAGGAAAACATCATTATATCACACGCACAATGGCGA
GAAACGATCATAACAAAAGCCATTTCTCTACTGCTGCCGCAATATATTCA
GGTGCTTCAATTCCGCCACGACTGA
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Synonyms
Publications