jgi.p|Nanoce1779_2|331155, mRNA_2524 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|331155
Unique NamemRNA_2524
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length958
Alignment locationscaffold_5:557367..558324 -

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Properties
Property NameValue
TranscriptId331241
TrackFilteredModels2
ProteinId331155
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:557367..558324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|331155gene_2524Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|331155mRNA_2524-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2524CDS_2524Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2524 ID=mRNA_2524|Name=jgi.p|Nanoce1779_2|331155|organism=Nannochloropsis oceanica|type=mRNA|length=958bp
GTGGCTGCCACTTGTTGTTTGTTGTCTTTTTGCCTCGCTGGCCCCGAGCC
CAATTTGGTGTCCTCCTTCCTGCTCTTGGACTCTGCATTATACCGTACGG
CCAGTGTCTCGTAGCATCTGCTCGTATGTCAGATAAACAGTCTCTTTCTT
CTCCTCTCCGTCTTTATCAAGCGTTCCTCTCTCATCCTCCGCCTTCGCCC
CTCCCCATTGTACAGACCCATCACCCCCGGCCCAACGACTTCCACCCGCG
CCATGTCCAAGAAGCGGGCCGTAAACGTGGTCCTGCTTGAAGACCTGGCC
CTGCAGGGCTTTGCAGGGGAAACAGTGGCAGTCAAGCCGGGGTATGCCCG
CAACTTCCTCATCCCAGGCCGCAAGGCTGTGTACGCCACTGCCGACAACA
AAGCACTGCACGTCGTGGAACGCTCGGACGAGGAGCGGAGGCTCTTAGAA
GAACGCCGAGATTTCGTGCAGTTCAAAGCGCGGGCTGCGGATCGGGCATT
AACATTTACCCGAAAGATTTCATTGGATGGAACGAGTTTGGAGCAGCCTC
TTACCAAGGCCGAGCTAGCCGGGGCTGTGCGAAAACAGTTGAAGCGCCGA
GTGGAGGAGACTGACATTCGATTGCCCCGAGGCACGGAAGTGAATGTCTT
GGGAGATCTGGAGATCAAGGTAGAAGTGGGAGTACCACAGCTGTTGTTAT
TGCAAGAGCATCTACAGCAGCAGCAAGACGGGGGGTGTCCTACAGCGATG
GGGGAGAAGAAGGGGGGAGTCAAGGAGAAGAGAGAGGCTGTGTCTGTCAA
GGTAAATATCCTCAAGGATGAGACGAAGCGGGATCAAAGAGTCTCTCGTG
GGCCAGATGCAGAGGGAGGCGGAAAGCCGAATGAATAAAATATAGTGGAG
GGAGACGAGCCTAAGCCAAATAAGTGACAGGCAGACAAAACAAATAGAAA
GCCTTTGC
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protein sequence of jgi.p|Nanoce1779_2|331155

>mRNA_2524-protein ID=mRNA_2524-protein|Name=jgi.p|Nanoce1779_2|331155|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MSKKRAVNVVLLEDLALQGFAGETVAVKPGYARNFLIPGRKAVYATADNK
ALHVVERSDEERRLLEERRDFVQFKARAADRALTFTRKISLDGTSLEQPL
TKAELAGAVRKQLKRRVEETDIRLPRGTEVNVLGDLEIKVEVGVPQLLLL
QEHLQQQQDGGCPTAMGEKKGGVKEKREAVSVKVNILKDETKRDQRVSRG
PDAEGGGKPNE*
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mRNA from alignment at scaffold_5:557367..558324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2524 ID=mRNA_2524|Name=jgi.p|Nanoce1779_2|331155|organism=Nannochloropsis oceanica|type=mRNA|length=958bp|location=Sequence derived from alignment at scaffold_5:557367..558324- (Nannochloropsis oceanica)
GTGGCTGCCACTTGTTGTTTGTTGTCTTTTTGCCTCGCTGGCCCCGAGCC
CAATTTGGTGTCCTCCTTCCTGCTCTTGGACTCTGCATTATACCGTACGG
CCAGTGTCTCGTAGCATCTGCTCGTATGTCAGATAAACAGTCTCTTTCTT
CTCCTCTCCGTCTTTATCAAGCGTTCCTCTCTCATCCTCCGCCTTCGCCC
CTCCCCATTGTACAGACCCATCACCCCCGGCCCAACGACTTCCACCCGCG
CCATGTCCAAGAAGCGGGCCGTAAACGTGGTCCTGCTTGAAGACCTGGCC
CTGCAGGGCTTTGCAGGGGAAACAGTGGCAGTCAAGCCGGGGTATGCCCG
CAACTTCCTCATCCCAGGCCGCAAGGCTGTGTACGCCACTGCCGACAACA
AAGCACTGCACGTCGTGGAACGCTCGGACGAGGAGCGGAGGCTCTTAGAA
GAACGCCGAGATTTCGTGCAGTTCAAAGCGCGGGCTGCGGATCGGGCATT
AACATTTACCCGAAAGATTTCATTGGATGGAACGAGTTTGGAGCAGCCTC
TTACCAAGGCCGAGCTAGCCGGGGCTGTGCGAAAACAGTTGAAGCGCCGA
GTGGAGGAGACTGACATTCGATTGCCCCGAGGCACGGAAGTGAATGTCTT
GGGAGATCTGGAGATCAAGGTAGAAGTGGGAGTACCACAGCTGTTGTTAT
TGCAAGAGCATCTACAGCAGCAGCAAGACGGGGGGTGTCCTACAGCGATG
GGGGAGAAGAAGGGGGGAGTCAAGGAGAAGAGAGAGGCTGTGTCTGTCAA
GGTAAATATCCTCAAGGATGAGACGAAGCGGGATCAAAGAGTCTCTCGTG
GGCCAGATGCAGAGGGAGGCGGAAAGCCGAATGAATAAAATATAGTGGAG
GGAGACGAGCCTAAGCCAAATAAGTGACAGGCAGACAAAACAAATAGAAA
GCCTTTGC
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Coding sequence (CDS) from alignment at scaffold_5:557367..558324-

>mRNA_2524 ID=mRNA_2524|Name=jgi.p|Nanoce1779_2|331155|organism=Nannochloropsis oceanica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_5:557367..558324- (Nannochloropsis oceanica)
ATGTCCAAGAAGCGGGCCGTAAACGTGGTCCTGCTTGAAGACCTGGCCCT
GCAGGGCTTTGCAGGGGAAACAGTGGCAGTCAAGCCGGGGTATGCCCGCA
ACTTCCTCATCCCAGGCCGCAAGGCTGTGTACGCCACTGCCGACAACAAA
GCACTGCACGTCGTGGAACGCTCGGACGAGGAGCGGAGGCTCTTAGAAGA
ACGCCGAGATTTCGTGCAGTTCAAAGCGCGGGCTGCGGATCGGGCATTAA
CATTTACCCGAAAGATTTCATTGGATGGAACGAGTTTGGAGCAGCCTCTT
ACCAAGGCCGAGCTAGCCGGGGCTGTGCGAAAACAGTTGAAGCGCCGAGT
GGAGGAGACTGACATTCGATTGCCCCGAGGCACGGAAGTGAATGTCTTGG
GAGATCTGGAGATCAAGGTAGAAGTGGGAGTACCACAGCTGTTGTTATTG
CAAGAGCATCTACAGCAGCAGCAAGACGGGGGGTGTCCTACAGCGATGGG
GGAGAAGAAGGGGGGAGTCAAGGAGAAGAGAGAGGCTGTGTCTGTCAAGG
TAAATATCCTCAAGGATGAGACGAAGCGGGATCAAAGAGTCTCTCGTGGG
CCAGATGCAGAGGGAGGCGGAAAGCCGAATGAATAA
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Synonyms
Publications