jgi.p|Nanoce1779_2|580658, mRNA_2522 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580658
Unique NamemRNA_2522
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1585
Alignment locationscaffold_5:552763..554347 -

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Properties
Property NameValue
TranscriptId580744
TrackFilteredModels2
ProteinId580658
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:552763..554347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580658gene_2522Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580658mRNA_2522-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2522CDS_2522Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2522 ID=mRNA_2522|Name=jgi.p|Nanoce1779_2|580658|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp
ACAGGCATGCTCAATTTTGCAACAAGCGCCAGGTGATCGCTGGGGTGGTG
GCAAAAACTAGACGCTCGCGAGCAGTGGGTAGCGGGGATGCTCAATGGGC
GGGCTCTTATACTTCGTGCGAGGCATTCTTCTTCTCTTGGTGATTTGTCC
GGTCCAGCTGCCTGTCCATCGTGAAGGATCATCCAGGGTTGTCCTTTGTG
CCGCTGCAAGCAATGTAGTAGATGGGGAAGGAGGCTTCGGCACGAGGCCG
CCGCCGCCTTTGGCCCCACCTTCATCTTGGAGCATCGAGGGCAGAGGGGA
CGAGGAGGAGGACGACGATCACTCTACCTGGCTGTCAGATCTCAGCTCTA
CTCCTAGCATGTCATTTCCTCAGCCTCATGTCCCACCGCGTGGCAGTAGA
TCGATTGACAACGAGATAGAAGAGAGTGTAGATGCAAATGATTACGAGCA
TTACAAGTCGGAGGAGGACGTCGGAAAAGAGGAGGACGACGACGATAGCC
TCGATGCCCTTTTTTCAGCCCCAGAGCTGGAAGACAGGCGAACACAAAGC
AGCTGGATACATCGTTTTTGCCGTACCCCTGGGAATGAACTTTTTTGTGT
CGTCCCTGCTTCTTTTCTGGCGGATGAGTTCAACTGGTTGGGCCTCCCTT
CAGACCTGGCCGCCATCAACCTGCTGCTTGGCAACGTCGTCGACAAAGGC
GACAAGTTGACCGTCAGTGTCAGTAAGGACAGTAGGGTGCCATTTGCATG
GGATGATGTCATCGCTCAACGGATGTATGGACTCATTCATGCACGGTTTA
TCGTGACGCAGAAAGGCCTAAACGCAATGCGGGAGAAATATGAGCACGGG
CATTTCGGCCGCTGTCCCCGCCTGGCCTGCGACGAACAAGTCCTGCTGCC
TGTAGGTGTTCGGGACGAAGAGGGGAGGGGAAGACAAGAAAAGGCGGACG
AGGGGCATAGCCAGAGGGATTATAAAGGATGCGTCAATCTCTATTGCCCA
CGCTGTCGAGAGCTGTACCGGCCGGCCGACCCGTATCATCAGCAGCTCAA
TGGCGCTTACTGGGGTACCAGCTTCGCTCATCTCTTTATACTGGCCTTTC
CTGATCTATGTCTTGTGCCATCTTTACGCGATGATTCTTTGATGGGGGCA
GAAAATGGGGATCATTCGACGACGACAGGGATCAGTTCCAGGGGCAGCAG
CAGCAGCAGCAGCACGGGAAAGTATGTGCCGCGGGTATTTGGCTTTCGTG
TAGAAGTTGATTGCAAAAGGAACAAAATCCTGTGGCCCGGATATCAGAAG
GGAAGAACTGCAGCAGACTCCAATCCTCCGCCACTGTATCCCGCAGAGCA
GTGTCGGCCGTATGGCCGATCACCCTTGTCACTGAGCAGACAAAGAATGG
TCATTGTCAAAATGAAGTTCGGTTTCCGGGAGATTTCCCATTTGTGGTGT
AAGCGCTGGTGGAAGGAAATGAGGAAGATGAGATGCCGAGCACCAAGATG
TATGCGATGCAAATAAGATGTAAAACGAAAACCAGAGGAAAATAAGCAAA
CAGTATTAAATCAATCGAGTTTTTGTCTTTGTAGA
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protein sequence of jgi.p|Nanoce1779_2|580658

>mRNA_2522-protein ID=mRNA_2522-protein|Name=jgi.p|Nanoce1779_2|580658|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MGGLLYFVRGILLLLVICPVQLPVHREGSSRVVLCAAASNVVDGEGGFGT
RPPPPLAPPSSWSIEGRGDEEEDDDHSTWLSDLSSTPSMSFPQPHVPPRG
SRSIDNEIEESVDANDYEHYKSEEDVGKEEDDDDSLDALFSAPELEDRRT
QSSWIHRFCRTPGNELFCVVPASFLADEFNWLGLPSDLAAINLLLGNVVD
KGDKLTVSVSKDSRVPFAWDDVIAQRMYGLIHARFIVTQKGLNAMREKYE
HGHFGRCPRLACDEQVLLPVGVRDEEGRGRQEKADEGHSQRDYKGCVNLY
CPRCRELYRPADPYHQQLNGAYWGTSFAHLFILAFPDLCLVPSLRDDSLM
GAENGDHSTTTGISSRGSSSSSSTGKYVPRVFGFRVEVDCKRNKILWPGY
QKGRTAADSNPPPLYPAEQCRPYGRSPLSLSRQRMVIVKMKFGFREISHL
WCKRWWKEMRKMRCRAPRCMRCK*
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mRNA from alignment at scaffold_5:552763..554347-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2522 ID=mRNA_2522|Name=jgi.p|Nanoce1779_2|580658|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp|location=Sequence derived from alignment at scaffold_5:552763..554347- (Nannochloropsis oceanica)
ACAGGCATGCTCAATTTTGCAACAAGCGCCAGGTGATCGCTGGGGTGGTG
GCAAAAACTAGACGCTCGCGAGCAGTGGGTAGCGGGGATGCTCAATGGGC
GGGCTCTTATACTTCGTGCGAGGCATTCTTCTTCTCTTGGTGATTTGTCC
GGTCCAGCTGCCTGTCCATCGTGAAGGATCATCCAGGGTTGTCCTTTGTG
CCGCTGCAAGCAATGTAGTAGATGGGGAAGGAGGCTTCGGCACGAGGCCG
CCGCCGCCTTTGGCCCCACCTTCATCTTGGAGCATCGAGGGCAGAGGGGA
CGAGGAGGAGGACGACGATCACTCTACCTGGCTGTCAGATCTCAGCTCTA
CTCCTAGCATGTCATTTCCTCAGCCTCATGTCCCACCGCGTGGCAGTAGA
TCGATTGACAACGAGATAGAAGAGAGTGTAGATGCAAATGATTACGAGCA
TTACAAGTCGGAGGAGGACGTCGGAAAAGAGGAGGACGACGACGATAGCC
TCGATGCCCTTTTTTCAGCCCCAGAGCTGGAAGACAGGCGAACACAAAGC
AGCTGGATACATCGTTTTTGCCGTACCCCTGGGAATGAACTTTTTTGTGT
CGTCCCTGCTTCTTTTCTGGCGGATGAGTTCAACTGGTTGGGCCTCCCTT
CAGACCTGGCCGCCATCAACCTGCTGCTTGGCAACGTCGTCGACAAAGGC
GACAAGTTGACCGTCAGTGTCAGTAAGGACAGTAGGGTGCCATTTGCATG
GGATGATGTCATCGCTCAACGGATGTATGGACTCATTCATGCACGGTTTA
TCGTGACGCAGAAAGGCCTAAACGCAATGCGGGAGAAATATGAGCACGGG
CATTTCGGCCGCTGTCCCCGCCTGGCCTGCGACGAACAAGTCCTGCTGCC
TGTAGGTGTTCGGGACGAAGAGGGGAGGGGAAGACAAGAAAAGGCGGACG
AGGGGCATAGCCAGAGGGATTATAAAGGATGCGTCAATCTCTATTGCCCA
CGCTGTCGAGAGCTGTACCGGCCGGCCGACCCGTATCATCAGCAGCTCAA
TGGCGCTTACTGGGGTACCAGCTTCGCTCATCTCTTTATACTGGCCTTTC
CTGATCTATGTCTTGTGCCATCTTTACGCGATGATTCTTTGATGGGGGCA
GAAAATGGGGATCATTCGACGACGACAGGGATCAGTTCCAGGGGCAGCAG
CAGCAGCAGCAGCACGGGAAAGTATGTGCCGCGGGTATTTGGCTTTCGTG
TAGAAGTTGATTGCAAAAGGAACAAAATCCTGTGGCCCGGATATCAGAAG
GGAAGAACTGCAGCAGACTCCAATCCTCCGCCACTGTATCCCGCAGAGCA
GTGTCGGCCGTATGGCCGATCACCCTTGTCACTGAGCAGACAAAGAATGG
TCATTGTCAAAATGAAGTTCGGTTTCCGGGAGATTTCCCATTTGTGGTGT
AAGCGCTGGTGGAAGGAAATGAGGAAGATGAGATGCCGAGCACCAAGATG
TATGCGATGCAAATAAGATGTAAAACGAAAACCAGAGGAAAATAAGCAAA
CAGTATTAAATCAATCGAGTTTTTGTCTTTGTAGA
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Coding sequence (CDS) from alignment at scaffold_5:552763..554347-

>mRNA_2522 ID=mRNA_2522|Name=jgi.p|Nanoce1779_2|580658|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_5:552763..554347- (Nannochloropsis oceanica)
ATGGGCGGGCTCTTATACTTCGTGCGAGGCATTCTTCTTCTCTTGGTGAT
TTGTCCGGTCCAGCTGCCTGTCCATCGTGAAGGATCATCCAGGGTTGTCC
TTTGTGCCGCTGCAAGCAATGTAGTAGATGGGGAAGGAGGCTTCGGCACG
AGGCCGCCGCCGCCTTTGGCCCCACCTTCATCTTGGAGCATCGAGGGCAG
AGGGGACGAGGAGGAGGACGACGATCACTCTACCTGGCTGTCAGATCTCA
GCTCTACTCCTAGCATGTCATTTCCTCAGCCTCATGTCCCACCGCGTGGC
AGTAGATCGATTGACAACGAGATAGAAGAGAGTGTAGATGCAAATGATTA
CGAGCATTACAAGTCGGAGGAGGACGTCGGAAAAGAGGAGGACGACGACG
ATAGCCTCGATGCCCTTTTTTCAGCCCCAGAGCTGGAAGACAGGCGAACA
CAAAGCAGCTGGATACATCGTTTTTGCCGTACCCCTGGGAATGAACTTTT
TTGTGTCGTCCCTGCTTCTTTTCTGGCGGATGAGTTCAACTGGTTGGGCC
TCCCTTCAGACCTGGCCGCCATCAACCTGCTGCTTGGCAACGTCGTCGAC
AAAGGCGACAAGTTGACCGTCAGTGTCAGTAAGGACAGTAGGGTGCCATT
TGCATGGGATGATGTCATCGCTCAACGGATGTATGGACTCATTCATGCAC
GGTTTATCGTGACGCAGAAAGGCCTAAACGCAATGCGGGAGAAATATGAG
CACGGGCATTTCGGCCGCTGTCCCCGCCTGGCCTGCGACGAACAAGTCCT
GCTGCCTGTAGGTGTTCGGGACGAAGAGGGGAGGGGAAGACAAGAAAAGG
CGGACGAGGGGCATAGCCAGAGGGATTATAAAGGATGCGTCAATCTCTAT
TGCCCACGCTGTCGAGAGCTGTACCGGCCGGCCGACCCGTATCATCAGCA
GCTCAATGGCGCTTACTGGGGTACCAGCTTCGCTCATCTCTTTATACTGG
CCTTTCCTGATCTATGTCTTGTGCCATCTTTACGCGATGATTCTTTGATG
GGGGCAGAAAATGGGGATCATTCGACGACGACAGGGATCAGTTCCAGGGG
CAGCAGCAGCAGCAGCAGCACGGGAAAGTATGTGCCGCGGGTATTTGGCT
TTCGTGTAGAAGTTGATTGCAAAAGGAACAAAATCCTGTGGCCCGGATAT
CAGAAGGGAAGAACTGCAGCAGACTCCAATCCTCCGCCACTGTATCCCGC
AGAGCAGTGTCGGCCGTATGGCCGATCACCCTTGTCACTGAGCAGACAAA
GAATGGTCATTGTCAAAATGAAGTTCGGTTTCCGGGAGATTTCCCATTTG
TGGTGTAAGCGCTGGTGGAAGGAAATGAGGAAGATGAGATGCCGAGCACC
AAGATGTATGCGATGCAAATAA
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Synonyms
Publications