jgi.p|Nanoce1779_2|580654, mRNA_2521 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580654
Unique Name	mRNA_2521
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2005
Alignment location	scaffold_5:550414..552792 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580740
Track	FilteredModels2
ProteinId	580654

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:550414..552792 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580654	gene_2521	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580654	mRNA_2521-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2521	CDS_2521	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:550414..552792+
coding sequence from alignment at scaffold_5:550414..552792+

mRNA sequence

>mRNA_2521 ID=mRNA_2521|Name=jgi.p|Nanoce1779_2|580654|organism=Nannochloropsis oceanica|type=mRNA|length=2005bp
CAGTAAACATCTGCAGGTAGTAGGGTCGCAATCTGAGACCTCCTCCCATT
CAACCTTGAGGAAGCGGAATGCCGTCAAGTCACCTTGCTGCACACCCGGT
AAGGCTGGTCTTTCTCCACATCCTCTTCTACTGTGACCTGCTTTCCTACC
CCCCACCCACCACGTAGCGAGTGCGGCCCACCTAGGGTCCTGCCTCTCTC
TTCGAACTTATCCTCTCTCCTCTTACTGCGACGTTTTTCTCGTACAATAA
TTTGTTGCTGGCGATGCTGCTGCTGCTGCTGGTGATGATGTTACTCCTCC
TCATCTTCGTCCTCCTCGTCGTCCTTCTCTCCCTCTTCGTCCTCTTCCTT
TCTGCTGGAATAATCGCGGGTCTTGTGACGTTTTTGGCTAGTGTGCTGTT
GATGCGATTTCCAATTCTGCTGAATAGCCCCATACTAAGCCTGCCCTTGC
ATCTCGGTACTAGGACTTTACCCACCAGATGGCAGCCGCCGTGCCGCCCG
GCCCGATGCCGTCACTCTCTCCGCCACTCCTTCCCTCCTCGTCCTCCTCT
TCCTCCTCCTCTTCTCGAGGCTGGATGTACTCATCCTTGCCCCCAATGGT
GCTACACCTTTTGAACGCTCTTCGGCCCCGCGCTCCCGTCTCTCTGCCCT
TTTCCGAATTTTTAAAGCACGCTCAGGAAGGAAAGCTGGCAAGGGTCTTG
ATGAGCCAAGACCGATTTGAGGTGCAAATGAAGGCCACGGCCGCAGGTGC
CGCCGGTGCTGCTGCTGCTGTGCAACTCGCCCGGCCTCAAGCGTACCGAA
CTTTTGTCATCCCACACTTGGACCGTCAATGGATCGTCGAGATGCTGCAG
AAGAATGGCGTACAGTTTGGAACCGCCACGCCTTCATGGGGGCGGCGCAT
CATGACGCTGTTGCTGACTCTCGCTCCGTTCTTATATCTTGCTTTGGTGT
ACAAGATGATGAACAAGCTTTACAATCCCAACGATAGCGTGGGAAAAGAA
CAGAAGGACGCCAAGCAAAATCAAAAGAAGCGGCTGGTCACTTTCAAAGA
TGTGGCGGGCATCGACACGGCGAAGCTGGAGCTGTCGGAGGTGGTTGAAT
TCCTGAGAGATAGCACTCGTTACGACGCCATTGGTGCCCGATTACCCAAG
GGTATCCTGCTGTCAGGAGCTCCAGGGACTGGCAAGACCCTCCTCGCGAG
AGCAGTCGCAAACGAGGCGGGTGTGTCTTTCATCAGCTGCTCAGCGAGTG
ACTTTGTAGAAATGCTCGTAGGAAGAGGAGCGGCACGTGTGCGTGATTTG
TTTCAACGAGGGAGGGTCAATGCTCCCTGTATTATTTTCATTGACGAGCT
AGACGCCTTGGCAAAAGCCCGAGGGTCCTTCTCGTCTAACGATGAACGGG
ACCAGACGCTGAACCAGCTGCTTTGTGAAATGGATGGGTTCGAAGGAGGG
GAGACTTGTGTACTTGTCATTGCTGCTACAAATAGACCAGAGGTTATTGA
CTCAGCCTTGATCCGCCCTGGTCGTTTCGATCGACACATCGCCGTGGGCC
TGCCAGATACAAGGGGCCGACGCGCGATTTTGGAAGTGCATTCTCGCAAC
ATCCGCTTATCCCCCGCTGTGGACCTCATGAAAATTGCTCGATGCTCTAA
GGGGTTTTCAGGAGCGGAGCTAAGTAACATCATTAACGAAGGTGCACTTC
TCGCCGTTCGAGCGGGGCTAGGGGCCGTGACACAGGCATGCTTGGAAGAG
GCCTTGGAACGAAATAATCAAACAAGGCGATTGGCGGCCCAAGTGGATGG
AAATGGCAGTGGCACTGATGGCGGGAACTCGTTTCTGTATCAGCTTCATC
ACCACATTAATAATAGCAATAATCGACTACCACACGAACCGACATCGTAG
CGATAACCGAATGAAAAATGAGAGTCACACTATACAGGATTCACCGAAAA
AGCTATGTTAATAAAAACAAGAAACTCTACAAAGACAAAAACTCGATTGA
TTTAA

protein sequence of jgi.p|Nanoce1779_2|580654

>mRNA_2521-protein ID=mRNA_2521-protein|Name=jgi.p|Nanoce1779_2|580654|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MAAAVPPGPMPSLSPPLLPSSSSSSSSSSRGWMYSSLPPMVLHLLNALRP
RAPVSLPFSEFLKHAQEGKLARVLMSQDRFEVQMKATAAGAAGAAAAVQL
ARPQAYRTFVIPHLDRQWIVEMLQKNGVQFGTATPSWGRRIMTLLLTLAP
FLYLALVYKMMNKLYNPNDSVGKEQKDAKQNQKKRLVTFKDVAGIDTAKL
ELSEVVEFLRDSTRYDAIGARLPKGILLSGAPGTGKTLLARAVANEAGVS
FISCSASDFVEMLVGRGAARVRDLFQRGRVNAPCIIFIDELDALAKARGS
FSSNDERDQTLNQLLCEMDGFEGGETCVLVIAATNRPEVIDSALIRPGRF
DRHIAVGLPDTRGRRAILEVHSRNIRLSPAVDLMKIARCSKGFSGAELSN
IINEGALLAVRAGLGAVTQACLEEALERNNQTRRLAAQVDGNGSGTDGGN
SFLYQLHHHINNSNNRLPHEPTS*

mRNA from alignment at scaffold_5:550414..552792+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2521 ID=mRNA_2521|Name=jgi.p|Nanoce1779_2|580654|organism=Nannochloropsis oceanica|type=mRNA|length=2379bp|location=Sequence derived from alignment at scaffold_5:550414..552792+ (Nannochloropsis oceanica)
CAGTAAACATCTGCAGGTAGTAGGGTCGCAATCTGAGACCTCCTCCCATT
CAACCTTGAGGAAGCGGAATGCCGTCAAGTCACCTTGCTGCACACCCGGT
AAGGCTGGTCTTTCTCCACATCCTCTTCTACTGTGACCTGCTTTCCTACC
CCCCACCCACCACGTAGCGAGTGCGGCCCACCTAGGGTCCTGCCTCTCTC
TTCGAACTTATCCTCTCTCCTCTTACTGCGACGTTTTTCTCGTACAATAA
TTTGTTGCTGGCGATGCTGCTGCTGCTGCTGGTGATGATGTTACTCCTCC
TCATCTTCGTCCTCCTCGTCGTCCTTCTCTCCCTCTTCGTCCTCTTCCTT
TCTGCTGGAATAATCGCGGGTCTTGTGACGTTTTTGGCTAGTGTGCTGTT
GATGCGATTTCCAATTCTGCTGAATAGGTAGTGTTGTCGCACCTATACTC
ACCGTCTCGCCGGCGGTTCATGGTGTTTCACGTGCGTGTACGCCTGTCTA
CAATATTCAATAATGAGTTGCGGTGGTAGGAGCGTGAGAGAAGCTCCCCC
CCCCCCAAAAGTATGGCGGGGAGATCGATCAAACGGACATTTGTTTTGGG
GGGAATGTCCACCTTTGCGGAAGCTGGCACACCTACCTAGCACTTCAACG
ATCCACCACGATGGCGAATACACGTTGTCAGACATCCTTTCAAATCTCTT
ACGCCCGCTCTTTCTATCCCTACGCACAGCCCCATACTAAGCCTGCCCTT
GCATCTCGGTACTAGGACTTTACCCACCAGATGGCAGCCGCCGTGCCGCC
CGGCCCGATGCCGTCACTCTCTCCGCCACTCCTTCCCTCCTCGTCCTCCT
CTTCCTCCTCCTCTTCTCGAGGCTGGATGTACTCATCCTTGCCCCCAATG
GTGCTACACCTTTTGAACGCTCTTCGGCCCCGCGCTCCCGTCTCTCTGCC
CTTTTCCGAATTTTTAAAGCACGCTCAGGAAGGAAAGCTGGCAAGGGTCT
TGATGAGCCAAGACCGATTTGAGGTGCAAATGAAGGCCACGGCCGCAGGT
GCCGCCGGTGCTGCTGCTGCTGTGCAACTCGCCCGGCCTCAAGCGTACCG
AACTTTTGTCATCCCACACTTGGACCGTCAATGGATCGTCGAGATGCTGC
AGAAGAATGGCGTACAGTTTGGAACCGCCACGCCTTCATGGGGGCGGCGC
ATCATGACGCTGTTGCTGACTCTCGCTCCGTTCTTATATCTTGCTTTGGT
GTACAAGATGATGAACAAGCTTTACAATCCCAACGATAGCGTGGGAAAAG
AACAGAAGGACGCCAAGCAAAATCAAAAGAAGCGGCTGGTCACTTTCAAA
GATGTGGCGGGCATCGACACGGCGAAGCTGGAGCTGTCGGAGGTGGTTGA
ATTCCTGAGAGATAGCACTCGTTACGACGCCATTGGTGCCCGATTACCCA
AGGGTAAGTGAAACATAACATTTCAATTAATGAAAAGACCAGCATCGTCC
CTCACCCGCTCGCCCCCTCCTTTAGGTATCCTGCTGTCAGGAGCTCCAGG
GACTGGCAAGACCCTCCTCGCGAGAGCAGTCGCAAACGAGGCGGGTGTGT
CTTTCATCAGCTGCTCAGCGAGTGACTTTGTAGAAATGCTCGTAGGAAGA
GGAGCGGCACGTGTGCGTGATTTGTTTCAACGAGGGAGGGTCAATGCTCC
CTGTATTATTTTCATTGACGAGCTAGACGCCTTGGCAAAAGCCCGAGGGT
CCTTCTCGTCTAACGATGAACGGGACCAGACGCTGAACCAGCTGCTTTGT
GAAATGGATGGGTTCGAAGGAGGGGAGACTTGTGTACTTGTCATTGCTGC
TACAAATAGACCAGAGGTTATTGACTCAGCCTTGATCCGCCCTGGTCGTT
TCGATCGACACATCGCCGTGGGCCTGCCAGATACAAGGGGCCGACGCGCG
ATTTTGGAAGTGCATTCTCGCAACATCCGCTTATCCCCCGCTGTGGACCT
CATGAAAATTGCTCGATGCTCTAAGGGGTTTTCAGGAGCGGAGCTAAGTA
ACATCATTAACGAAGGTGCACTTCTCGCCGTTCGAGCGGGGCTAGGGGCC
GTGACACAGGCATGCTTGGAAGAGGCCTTGGAACGAAATAATCAAACAAG
GCGATTGGCGGCCCAAGTGGATGGAAATGGCAGTGGCACTGATGGCGGGA
ACTCGTTTCTGTATCAGCTTCATCACCACATTAATAATAGCAATAATCGA
CTACCACACGAACCGACATCGTAGCGATAACCGAATGAAAAATGAGAGTC
ACACTATACAGGATTCACCGAAAAAGCTATGTTAATAAAAACAAGAAACT
CTACAAAGACAAAAACTCGATTGATTTAA

Coding sequence (CDS) from alignment at scaffold_5:550414..552792+

>mRNA_2521 ID=mRNA_2521|Name=jgi.p|Nanoce1779_2|580654|organism=Nannochloropsis oceanica|type=CDS|length=2844bp|location=Sequence derived from alignment at scaffold_5:550414..552792+ (Nannochloropsis oceanica)
ATGGCAGCCGCCGTGCCGCCCGGCCCGATGCCGTCACTCTCTCCGCCACT
CCTTCCCTCCTCGTCCTCCTCTTCCTCCTCCTCTTCTCGAGGCTGGATGT
ACTCATCCTTGCCCCCAATGGTGCTACACCTTTTGAACGCTCTTCGGCCC
CGCGCTCCCGTCTCTCTGCCCTTTTCCGAATTTTTAAAGCACGCTCAGGA
AGGAAAGCTGGCAAGGGTCTTGATGAGCCAAGACCGATTTGAGGTGCAAA
TGAAGGCCACGGCCGCAGGTGCCGCCGGTGCTGCTGCTGCTGTGCAACTC
GCCCGGCCTCAAGCGTACCGAACTTTTGTCATCCCACACTTGGACCGTCA
ATGGATCGTCGAGATGCTGCAGAAGAATGGCGTACAGTTTGGAACCGCCA
CGCCTTCATGGGGGCGGCGCATCATGACGCTGTTGCTGACTCTCGCTCCG
TTCTTATATCTTGCTTTGGTGTACAAGATGATGAACAAGCTTTACAATCC
CAACGATAGCGTGGGAAAAGAACAGAAGGACGCCAAGCAAAATCAAAAGA
AGCGGCTGGTCACTTTCAAAGATGTGGCGGGCATCGACACGGCGAAGCTG
GAGCTGTCGGAGGTGGTTGAATTCCTGAGAGATAGCACTCGTTACGACGC
CATTGGTGCCCGATTACCCAAGGGTATCCTGCTGTCAGGAGCTCCAGGGA
CTGGCAAGACCCTCCTCGCGAGAGCAGTCGCAAACGAGGCGGGTGTGTCT
TTCATCAGCTGCTCAGCGAGTGACTTTGTAGAAATGCTCGTAGGAAGAGG
AGCGGCACGTGTGCGTGATTTGTTTCAACGAGGGAGGGTCAATGCTCCCT
GTATTATTTTCATTGACGAGCTAGACGCCTTGGCAAAAGCCCGAGGGTCC
TTCTCGTCTAACGATGAACGGGACCAGACGCTGAACCAGCTGCTTTGTGA
AATGGATGGGTTCGAAGGAGGGGAGACTTGTGTACTTGTCATTGCTGCTA
CAAATAGACCAGAGGTTATTGACTCAGCCTTGATCCGCCCTGGTCGTTTC
GATCGACACATCGCCGTGGGCCTGCCAGATACAAGGGGCCGACGCGCGAT
TTTGGAAGTGCATTCTCGCAACATCCGCTTATCCCCCGCTGTGGACCTCA
TGAAAATTGCTCGATGCTCTAAGGGGTTTTCAGGAGCGGAGCTAAGTAAC
ATCATTAACGAAGGTGCACTTCTCGCCGTTCGAGCGGGGCTAGGGGCCGT
GACACAGGCATGCTTGGAAGAGGCCTTGGAACGAAATAATCAAACAAGGC
GATTGGCGGCCCAAGTGGATGGAAATGGCAGTGGCACTGATGGCGGGAAC
TCGTTTCTGTATCAGCTTCATCACCACATTAATAATAGCAATAATCGACT
ACCACACGAACCGACATCGTAGATGGCAGCCGCCGTGCCGCCCGGCCCGA
TGCCGTCACTCTCTCCGCCACTCCTTCCCTCCTCGTCCTCCTCTTCCTCC
TCCTCTTCTCGAGGCTGGATGTACTCATCCTTGCCCCCAATGGTGCTACA
CCTTTTGAACGCTCTTCGGCCCCGCGCTCCCGTCTCTCTGCCCTTTTCCG
AATTTTTAAAGCACGCTCAGGAAGGAAAGCTGGCAAGGGTCTTGATGAGC
CAAGACCGATTTGAGGTGCAAATGAAGGCCACGGCCGCAGGTGCCGCCGG
TGCTGCTGCTGCTGTGCAACTCGCCCGGCCTCAAGCGTACCGAACTTTTG
TCATCCCACACTTGGACCGTCAATGGATCGTCGAGATGCTGCAGAAGAAT
GGCGTACAGTTTGGAACCGCCACGCCTTCATGGGGGCGGCGCATCATGAC
GCTGTTGCTGACTCTCGCTCCGTTCTTATATCTTGCTTTGGTGTACAAGA
TGATGAACAAGCTTTACAATCCCAACGATAGCGTGGGAAAAGAACAGAAG
GACGCCAAGCAAAATCAAAAGAAGCGGCTGGTCACTTTCAAAGATGTGGC
GGGCATCGACACGGCGAAGCTGGAGCTGTCGGAGGTGGTTGAATTCCTGA
GAGATAGCACTCGTTACGACGCCATTGGTGCCCGATTACCCAAGGGTATC
CTGCTGTCAGGAGCTCCAGGGACTGGCAAGACCCTCCTCGCGAGAGCAGT
CGCAAACGAGGCGGGTGTGTCTTTCATCAGCTGCTCAGCGAGTGACTTTG
TAGAAATGCTCGTAGGAAGAGGAGCGGCACGTGTGCGTGATTTGTTTCAA
CGAGGGAGGGTCAATGCTCCCTGTATTATTTTCATTGACGAGCTAGACGC
CTTGGCAAAAGCCCGAGGGTCCTTCTCGTCTAACGATGAACGGGACCAGA
CGCTGAACCAGCTGCTTTGTGAAATGGATGGGTTCGAAGGAGGGGAGACT
TGTGTACTTGTCATTGCTGCTACAAATAGACCAGAGGTTATTGACTCAGC
CTTGATCCGCCCTGGTCGTTTCGATCGACACATCGCCGTGGGCCTGCCAG
ATACAAGGGGCCGACGCGCGATTTTGGAAGTGCATTCTCGCAACATCCGC
TTATCCCCCGCTGTGGACCTCATGAAAATTGCTCGATGCTCTAAGGGGTT
TTCAGGAGCGGAGCTAAGTAACATCATTAACGAAGGTGCACTTCTCGCCG
TTCGAGCGGGGCTAGGGGCCGTGACACAGGCATGCTTGGAAGAGGCCTTG
GAACGAAATAATCAAACAAGGCGATTGGCGGCCCAAGTGGATGGAAATGG
CAGTGGCACTGATGGCGGGAACTCGTTTCTGTATCAGCTTCATCACCACA
TTAATAATAGCAATAATCGACTACCACACGAACCGACATCGTAG

Synonyms

Publications