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Properties
| Property Name | Value |
|---|
| TranscriptId | 580732 |
| Track | FilteredModels2 |
| ProteinId | 580646 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:546538..549157 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2520 ID=mRNA_2520|Name=jgi.p|Nanoce1779_2|580646|organism=Nannochloropsis oceanica|type=mRNA|length=2608bp
ACAGCGCAAGAACCTTTACGCCTTTGATCATCATCAGCAACATTAGCATC
GTCGTCGTCCCACTTGCCAGCTAGCACGACGGCTGTGGCAGCCGCATTAG
CACTTACCCACACCATAGCCCAAGGAGCCGCTCCCTTACATCGTCGCCGC
GAGAGTTGATCCACCAGAAGATCGTATCATCGAACTCCAAGCCACACATT
TATTAGCATGCAACCTTCATCTCTTGGCAGAGTTACAGTCCTGGTCCTTG
TGAGCTTTACCCAGGTTTGGACTGGTGTCGAGGCACAGCCCGGGTGGGGT
TGGGAAGCACAATGCATCGGGCAGTGGCTGCAGTGCGGCGGCTTAAATTA
CTGGGGTCCCACCAACTGTTGTGAGGGTCATCAATGTGAGTACGTGAACG
ACTACTGGTGGCAGTGCAACCCCACCGAGGCAGCACCGGTCAGGCCTGTT
GCCCCCGCTGCGCCAGCCGGCCCCGTCGTTACGCCTGGATCTCCACCCCC
AGCAGCAGTCCCAGTTAGCCCAGCTGCTACGGATGCACCAGTTGCGCCGT
CTGAGACTCCTGTTGTGGTCAATCCACCTGTAGATGCACCGGTTGAAGTG
AGACCACCAGGCGCTGTGCCGGTCACCGTCCCGGATGCACCGGCCGTGGT
CACGCCACCTGCTCCTGATGTTCCTGCTACCGTTCCTCCTGTTACTACTC
CACCAGTGTCACCTGCGCCGACGGTAGCACCTACGCAATTCCCCACCGAA
GCGGGCCCGCCCTTTTGGGAACAAGACTGTTTCCGCGTACGTAAAAATGT
TTTGTCGCTGACCCCTGAGGAGCTGGCTGACTTTTTAGAAGCGCTACAGG
CTCTTAAAAATAATGGGGTGTACGATACAATTACATCCGTCCACGGTAAT
CCAACTACCTTCAATCTCTTTCACGGGAACGATTATTTCTTGCCTTGGCA
TCGTTGGTACGTGTTACAGATTGAGAATGCGGTGCGGGATTTAGGGGGGA
AGTTTGCTTGTTTTTCGATGCCTTATTGGGATTGGACGTTGGACGCGGGG
AGGGAGACGCAGTCTCCTATTTGGGACTTTTTTGGACCTATGGGGAAAAA
GAACGACTCGTTCTGTATGAGGGAGGGGCCGTTTGCCGAGTGGAAGAATA
GTAAAGGGGGCTGTTTGAAGCGGGTTGGCTCGGACTCGTATCGCTTTTTC
TCCCCGGCGGAGGTCTTGGATCTGATCATGGGTAAGACGGATCTGGTAGG
TGGCTTCCGGCCTGCCTTTGAGGCTGGTGCACATTCTCGTCCGCATCTGT
TCATTGGTGGAGCAATGAATAGTTTTGCTAGCCCCGACGACCCCATTTTC
TGGCTGCATCACACCTTTGTCGATAAAATCTGGTCGATGTGGCAGGACTG
TCACAACTTGCTCGACCCCTTTAATATTACAGAGACGAGTTTCAAAGCTG
ACCAAATAGATGTCGAACTGGCATACGCCCCCGGGGTCACCACCCGCACC
ATGTGGTCCACCCGCAACTTGGGCTATGCCTACGAGACAGATATTATGTC
CGCCTACACTTTTCTCAACACCTGTCACTGGTTCAGCCTCAAACCCAACC
CCAGTCTGGACCTCGATCAACCATCCCCCCGCATGCCTGACCCGCCGTTG
GCCGACCCTGCTGTTGTGCCAGTAGATCCTGCAACATTGCCTGCGCCTGC
CCAACCACAAAAGCAGCAGGTGGATAGCAGCGACAATTATCGTACCAAAA
GCCCTAAACTACGAGGCAAGCAGGCTGTTGCGGCGCCACCGAAAGTGCAG
CAGCAGCAGCAGCAGCAGCACTTGTCGTCAGCTGTAGTCTTGACACCAGC
ACAAGGTGGATTCGTGGCTACAAAAGAATGGGCAGCTGCTCAAGCGGCTG
TAGCACCTTTTGAGCCGCATGGGAAGGGTTTAATTGTTGAAGAGAATCGC
GTGTTTACAGCTTGTATGGCGCGTGTACAGCGAGGCGAAAAGAGTGCGAC
CCGCGATGAGTGCCGCAGGGAAGTGTTGAAGCGGGATTGTGAGATGTTGG
GTTTCATTTGTGATTTGCCTGAGACTTATAGGGATGGCATGCACATGGAG
GCAGATGAAAATGTGTTTAAAGAGGGTAGTATGTGTGCGCGTTCGTGTCA
ACGGCGCCTTTAAGGGAGAAGGAGCGGGCATGACTTGGAAGAGAAAAATA
GGTATTTGGAAAGAGAGAAGTAGATGGGTAGGAAAGAGAGAAGGGTTGTG
TGTATGATCGTTGGAGACGACCAGGGGCAGAGGAAATAGAGTAAAAGAGT
GACTTGTTTGCACAGATGACAAAAGAAGGGGAGAAGGACAACCTGTACGC
GTATCCTGATTTTACGTTAATGAATATCGACTTCAATATCATGTCGGTGG
CTCAGACTGTACATTTTTCATCCGGAAAAAAGGAAGAGGACCAGTGAAAT
GATTGTCGCGGGTAACTGTTTCCAGAGGATGGAATAGGATGTAATCGATT
TTACAACCAAGTACACAATTTTGCTGTGCCCGTCGGTTGTAATTCCTACA
ACTGTGAGAATAGCTGGAGCAAAATGTGGAAGAAGAAATAATCTAATCTA
TTTTTTCA back to topprotein sequence of jgi.p|Nanoce1779_2|580646 >mRNA_2520-protein ID=mRNA_2520-protein|Name=jgi.p|Nanoce1779_2|580646|organism=Nannochloropsis oceanica|type=polypeptide|length=652bp
MQPSSLGRVTVLVLVSFTQVWTGVEAQPGWGWEAQCIGQWLQCGGLNYWG
PTNCCEGHQCEYVNDYWWQCNPTEAAPVRPVAPAAPAGPVVTPGSPPPAA
VPVSPAATDAPVAPSETPVVVNPPVDAPVEVRPPGAVPVTVPDAPAVVTP
PAPDVPATVPPVTTPPVSPAPTVAPTQFPTEAGPPFWEQDCFRVRKNVLS
LTPEELADFLEALQALKNNGVYDTITSVHGNPTTFNLFHGNDYFLPWHRW
YVLQIENAVRDLGGKFACFSMPYWDWTLDAGRETQSPIWDFFGPMGKKND
SFCMREGPFAEWKNSKGGCLKRVGSDSYRFFSPAEVLDLIMGKTDLVGGF
RPAFEAGAHSRPHLFIGGAMNSFASPDDPIFWLHHTFVDKIWSMWQDCHN
LLDPFNITETSFKADQIDVELAYAPGVTTRTMWSTRNLGYAYETDIMSAY
TFLNTCHWFSLKPNPSLDLDQPSPRMPDPPLADPAVVPVDPATLPAPAQP
QKQQVDSSDNYRTKSPKLRGKQAVAAPPKVQQQQQQQHLSSAVVLTPAQG
GFVATKEWAAAQAAVAPFEPHGKGLIVEENRVFTACMARVQRGEKSATRD
ECRREVLKRDCEMLGFICDLPETYRDGMHMEADENVFKEGSMCARSCQRR
L* back to topmRNA from alignment at scaffold_5:546538..549157- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2520 ID=mRNA_2520|Name=jgi.p|Nanoce1779_2|580646|organism=Nannochloropsis oceanica|type=mRNA|length=2620bp|location=Sequence derived from alignment at scaffold_5:546538..549157- (Nannochloropsis oceanica)
ACAGCGCAAGAACCTTTACGCCTTTGATCATCATCAGCAACATTAGCATC
GTCGTCGTCCCACTTGCCAGCTAGCACGACGGCTGTGGCAGCCGCATTAG
CACTTACCCACACCATAGCCCAAGGAGCCGCTCCCTTACATCGTCGCCGC
GAGAGTTGATCCACCAGAAGATCGTATCATCGAACTCCAAGCCACACATT
TATTAGCATGCAACCTTCATCTCTTGGCAGAGTTACAGTCCTGGTCCTTG
TGAGCTTTACCCAGGTTTGGACTGGTGTCGAGGCACAGCCCGGGTGGGGT
TGGGAAGCACAATGCATCGGGCAGTGGCTGCAGTGCGGCGGCTTAAATTA
CTGGGGTCCCACCAACTGTTGTGAGGGTCATCAATGTGAGTACGTGAACG
ACTACTGGTGGCAGTGCAACCCCACCGAGGCAGCACCGGTCAGGCCTGTT
GCCCCCGCTGCGCCAGCCGGCCCCGTCGTTACGCCTGGATCTCCACCCCC
AGCAGCAGTCCCAGTTAGCCCAGCTGCTACGGATGCACCAGTTGCGCCGT
CTGAGACTCCTGTTGTGGTCAATCCACCTGTAGATGCACCGGTTGAAGTG
AGACCACCAGGCGCTGTGCCGGTCACCGTCCCGGATGCACCGGCCGTGGT
CACGCCACCTGCTCCTGATGTTCCTGCTACCGTTCCTCCTGTTACTACTC
CACCAGTGTCACCTGCGCCGACGGTAGCACCTACGCAATTCCCCACCGAA
GCGGGCCCGCCCTTTTGGGAACAAGACTGTTTCCGCGTACGTAAAAATGT
TTTGTCGCTGACCCCTGAGGAGCTGGCTGACTTTTTAGAAGCGCTACAGG
CTCTTAAAAATAATGGGGTGTACGATACAATTACATCCGTCCACGGTAAT
CCAACTACCTTCAATCTCTTTCACGGGAACGATTATTTCTTGCCTTGGCA
TCGTTGGTACGTGTTACAGATTGAGAATGCGGTGCGGGATTTAGGGGGGA
AGTTTGCTTGTTTTTCGATGCCTTATTGGGATTGGACGTTGGACGCGGGG
AGGGAGACGCAGTCTCCTATTTGGGACTTTTTTGGACCTATGGGGAAAAA
GAACGACTCGTTCTGTATGAGGGAGGGGCCGTTTGCCGAGTGGAAGAATA
GTAAAGGGGGCTGTTTGAAGCGGGTTGGCTCGGACTCGTATCGCTTTTTC
TCCCCGGCGGAGGTCTTGGATCTGATCATGGGTAAGACGGATCTGGTAGG
TGGCTTCCGGCCTGCCTTTGAGGCTGGTGCACATTCTCGTCCGCATCTGT
TCATTGGTGGAGCAATGAATAGTTTTGCTAGCCCCGACGACCCCATTTTC
TGGCTGCATCACACCTTTGTCGATAAAATCTGGTCGATGTGGCAGGACTG
TCACAACTTGCTCGACCCCTTTAATATTACAGAGACGAGTTTCAAAGCTG
ACCAAATAGATGTCGAACTGGCATACGCCCCCGGGGTCACCACCCGCACC
ATGTGGTCCACCCGCAACTTGGGCTATGCCTACGAGACAGATATTATGTC
CGCCTACACTTTTCTCAACACCTGTCACTGGTTCAGCCTCAAACCCAACC
CCAGTCTGGACCTCGATCAACCATCCCCCCGCATGCCTGACCCGCCGTTG
GCCGACCCTGCTGTTGTGCCAGTAGATCCTGCAACATTGCCTGCGCCTGC
CCAACCACAAAAGCAGCAGGTGGATAGCAGCGACAATTATCGTACCAAAA
GCCCTAAACTACGAGGCAAGCAGGCTGTTGCGGCGCCACCGAAAGTGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACTTGTCGTCAGCTGTAGT
CTTGACACCAGCACAAGGTGGATTCGTGGCTACAAAAGAATGGGCAGCTG
CTCAAGCGGCTGTAGCACCTTTTGAGCCGCATGGGAAGGGTTTAATTGTT
GAAGAGAATCGCGTGTTTACAGCTTGTATGGCGCGTGTACAGCGAGGCGA
AAAGAGTGCGACCCGCGATGAGTGCCGCAGGGAAGTGTTGAAGCGGGATT
GTGAGATGTTGGGTTTCATTTGTGATTTGCCTGAGACTTATAGGGATGGC
ATGCACATGGAGGCAGATGAAAATGTGTTTAAAGAGGGTAGTATGTGTGC
GCGTTCGTGTCAACGGCGCCTTTAAGGGAGAAGGAGCGGGCATGACTTGG
AAGAGAAAAATAGGTATTTGGAAAGAGAGAAGTAGATGGGTAGGAAAGAG
AGAAGGGTTGTGTGTATGATCGTTGGAGACGACCAGGGGCAGAGGAAATA
GAGTAAAAGAGTGACTTGTTTGCACAGATGACAAAAGAAGGGGAGAAGGA
CAACCTGTACGCGTATCCTGATTTTACGTTAATGAATATCGACTTCAATA
TCATGTCGGTGGCTCAGACTGTACATTTTTCATCCGGAAAAAAGGAAGAG
GACCAGTGAAATGATTGTCGCGGGTAACTGTTTCCAGAGGATGGAATAGG
ATGTAATCGATTTTACAACCAAGTACACAATTTTGCTGTGCCCGTCGGTT
GTAATTCCTACAACTGTGAGAATAGCTGGAGCAAAATGTGGAAGAAGAAA
TAATCTAATCTATTTTTTCA back to topCoding sequence (CDS) from alignment at scaffold_5:546538..549157- >mRNA_2520 ID=mRNA_2520|Name=jgi.p|Nanoce1779_2|580646|organism=Nannochloropsis oceanica|type=CDS|length=3912bp|location=Sequence derived from alignment at scaffold_5:546538..549157- (Nannochloropsis oceanica)
GCAGCAGCAGCACTTGTCGTCAGCTGTAGTCTTGACACCAGCACAAGGTG
GATTCGTGGCTACAAAAGAATGGGCAGCTGCTCAAGCGGCTGTAGCACCT
TTTGAGCCGCATGGGAAGGGTTTAATTGTTGAAGAGAATCGCGTGTTTAC
AGCTTGTATGGCGCGTGTACAGCGAGGCGAAAAGAGTGCGACCCGCGATG
AGTGCCGCAGGGAAGTGTTGAAGCGGGATTGTGAGATGTTGGGTTTCATT
TGTGATTTGCCTGAGACTTATAGGGATGGCATGCACATGGAGGCAGATGA
AAATGTGTTTAAAGAGGGTAGTATGTGTGCGCGTTCGTGTCAACGGCGCC
TTTAAATGCAACCTTCATCTCTTGGCAGAGTTACAGTCCTGGTCCTTGTG
AGCTTTACCCAGGTTTGGACTGGTGTCGAGGCACAGCCCGGGTGGGGTTG
GGAAGCACAATGCATCGGGCAGTGGCTGCAGTGCGGCGGCTTAAATTACT
GGGGTCCCACCAACTGTTGTGAGGGTCATCAATGTGAGTACGTGAACGAC
TACTGGTGGCAGTGCAACCCCACCGAGGCAGCACCGGTCAGGCCTGTTGC
CCCCGCTGCGCCAGCCGGCCCCGTCGTTACGCCTGGATCTCCACCCCCAG
CAGCAGTCCCAGTTAGCCCAGCTGCTACGGATGCACCAGTTGCGCCGTCT
GAGACTCCTGTTGTGGTCAATCCACCTGTAGATGCACCGGTTGAAGTGAG
ACCACCAGGCGCTGTGCCGGTCACCGTCCCGGATGCACCGGCCGTGGTCA
CGCCACCTGCTCCTGATGTTCCTGCTACCGTTCCTCCTGTTACTACTCCA
CCAGTGTCACCTGCGCCGACGGTAGCACCTACGCAATTCCCCACCGAAGC
GGGCCCGCCCTTTTGGGAACAAGACTGTTTCCGCGTACGTAAAAATGTTT
TGTCGCTGACCCCTGAGGAGCTGGCTGACTTTTTAGAAGCGCTACAGGCT
CTTAAAAATAATGGGGTGTACGATACAATTACATCCGTCCACGGTAATCC
AACTACCTTCAATCTCTTTCACGGGAACGATTATTTCTTGCCTTGGCATC
GTTGGTACGTGTTACAGATTGAGAATGCGGTGCGGGATTTAGGGGGGAAG
TTTGCTTGTTTTTCGATGCCTTATTGGGATTGGACGTTGGACGCGGGGAG
GGAGACGCAGTCTCCTATTTGGGACTTTTTTGGACCTATGGGGAAAAAGA
ACGACTCGTTCTGTATGAGGGAGGGGCCGTTTGCCGAGTGGAAGAATAGT
AAAGGGGGCTGTTTGAAGCGGGTTGGCTCGGACTCGTATCGCTTTTTCTC
CCCGGCGGAGGTCTTGGATCTGATCATGGGTAAGACGGATCTGGTAGGTG
GCTTCCGGCCTGCCTTTGAGGCTGGTGCACATTCTCGTCCGCATCTGTTC
ATTGGTGGAGCAATGAATAGTTTTGCTAGCCCCGACGACCCCATTTTCTG
GCTGCATCACACCTTTGTCGATAAAATCTGGTCGATGTGGCAGGACTGTC
ACAACTTGCTCGACCCCTTTAATATTACAGAGACGAGTTTCAAAGCTGAC
CAAATAGATGTCGAACTGGCATACGCCCCCGGGGTCACCACCCGCACCAT
GTGGTCCACCCGCAACTTGGGCTATGCCTACGAGACAGATATTATGTCCG
CCTACACTTTTCTCAACACCTGTCACTGGTTCAGCCTCAAACCCAACCCC
AGTCTGGACCTCGATCAACCATCCCCCCGCATGCCTGACCCGCCGTTGGC
CGACCCTGCTGTTGTGCCAGTAGATCCTGCAACATTGCCTGCGCCTGCCC
AACCACAAAAGCAGCAGGTGGATAGCAGCGACAATTATCGTACCAAAAGC
CCTAAACTACGAGGCAAGCAGGCTGTTGCGGCGCCACCGAAAGTGCAGCA
GCAGCAGCAGCAGCAGCACTTGTCGTCAGCTGTAGTCTTGACACCAGCAC
AAGGTGGATTCGTGGCTACAAAAGAATGGGCAGCTGCTCAAGCGGCTGTA
GCACCTTTTGAGCCGCATGGGAAGGGTTTAATTGTTGAAGAGAATCGCGT
GTTTACAGCTTGTATGGCGCGTGTACAGCGAGGCGAAAAGAGTGCGACCC
GCGATGAGTGCCGCAGGGAAGTGTTGAAGCGGGATTGTGAGATGTTGGGT
TTCATTTGTGATTTGCCTGAGACTTATAGGGATGGCATGCACATGGAGGC
AGATGAAAATGTGTTTAAAGAGGGTAGTATGTGTGCGCGTTCGTGTCAAC
GGCGCCTTTAAATGCAACCTTCATCTCTTGGCAGAGTTACAGTCCTGGTC
CTTGTGAGCTTTACCCAGGTTTGGACTGGTGTCGAGGCACAGCCCGGGTG
GGGTTGGGAAGCACAATGCATCGGGCAGTGGCTGCAGTGCGGCGGCTTAA
ATTACTGGGGTCCCACCAACTGTTGTGAGGGTCATCAATGTGAGTACGTG
AACGACTACTGGTGGCAGTGCAACCCCACCGAGGCAGCACCGGTCAGGCC
TGTTGCCCCCGCTGCGCCAGCCGGCCCCGTCGTTACGCCTGGATCTCCAC
CCCCAGCAGCAGTCCCAGTTAGCCCAGCTGCTACGGATGCACCAGTTGCG
CCGTCTGAGACTCCTGTTGTGGTCAATCCACCTGTAGATGCACCGGTTGA
AGTGAGACCACCAGGCGCTGTGCCGGTCACCGTCCCGGATGCACCGGCCG
TGGTCACGCCACCTGCTCCTGATGTTCCTGCTACCGTTCCTCCTGTTACT
ACTCCACCAGTGTCACCTGCGCCGACGGTAGCACCTACGCAATTCCCCAC
CGAAGCGGGCCCGCCCTTTTGGGAACAAGACTGTTTCCGCGTACGTAAAA
ATGTTTTGTCGCTGACCCCTGAGGAGCTGGCTGACTTTTTAGAAGCGCTA
CAGGCTCTTAAAAATAATGGGGTGTACGATACAATTACATCCGTCCACGG
TAATCCAACTACCTTCAATCTCTTTCACGGGAACGATTATTTCTTGCCTT
GGCATCGTTGGTACGTGTTACAGATTGAGAATGCGGTGCGGGATTTAGGG
GGGAAGTTTGCTTGTTTTTCGATGCCTTATTGGGATTGGACGTTGGACGC
GGGGAGGGAGACGCAGTCTCCTATTTGGGACTTTTTTGGACCTATGGGGA
AAAAGAACGACTCGTTCTGTATGAGGGAGGGGCCGTTTGCCGAGTGGAAG
AATAGTAAAGGGGGCTGTTTGAAGCGGGTTGGCTCGGACTCGTATCGCTT
TTTCTCCCCGGCGGAGGTCTTGGATCTGATCATGGGTAAGACGGATCTGG
TAGGTGGCTTCCGGCCTGCCTTTGAGGCTGGTGCACATTCTCGTCCGCAT
CTGTTCATTGGTGGAGCAATGAATAGTTTTGCTAGCCCCGACGACCCCAT
TTTCTGGCTGCATCACACCTTTGTCGATAAAATCTGGTCGATGTGGCAGG
ACTGTCACAACTTGCTCGACCCCTTTAATATTACAGAGACGAGTTTCAAA
GCTGACCAAATAGATGTCGAACTGGCATACGCCCCCGGGGTCACCACCCG
CACCATGTGGTCCACCCGCAACTTGGGCTATGCCTACGAGACAGATATTA
TGTCCGCCTACACTTTTCTCAACACCTGTCACTGGTTCAGCCTCAAACCC
AACCCCAGTCTGGACCTCGATCAACCATCCCCCCGCATGCCTGACCCGCC
GTTGGCCGACCCTGCTGTTGTGCCAGTAGATCCTGCAACATTGCCTGCGC
CTGCCCAACCACAAAAGCAGCAGGTGGATAGCAGCGACAATTATCGTACC
AAAAGCCCTAAACTACGAGGCAAGCAGGCTGTTGCGGCGCCACCGAAAGT
GCAGCAGCAGCA back to top
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