jgi.p|Nanoce1779_2|537303, mRNA_252 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|537303
Unique NamemRNA_252
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length943
Alignment locationscaffold_3:627929..629252 -

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Properties
Property NameValue
TranscriptId537389
TrackFilteredModels2
ProteinId537303
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:627929..629252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|537303gene_252Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|537303mRNA_252-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_252CDS_252Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_252 ID=mRNA_252|Name=jgi.p|Nanoce1779_2|537303|organism=Nannochloropsis oceanica|type=mRNA|length=943bp
CAGCGTCAGAATTCCAGAACTATCTATCCCCTTGCAGCAGCCCAGCATGG
AGGACGGCGGCGACAGCTTCACTCCCTTCGCATTGCTTATCATTGATCCA
CAGGCCGATTTCCACCAGGGTGGCTCTTTGGCAGTGCCAGGTGCCGATGA
TGACGCGCAACGCATTCAGAATTTTGTGGAGGGGAACTTAGATAACATCA
CCAATATCTACGTGACGTTGGACTCCCATCAGCGGGTCCACATCAGTCAC
CCTTTATTCTGGAAAGATGCAAATGGGGCATCTCCGGCGCCTTTCACGCC
TATCTTGCACACCGACGTCGTGGCTGGGAAGTGGATGGCTGCAGACGAGA
CCCTGAAGGCGTATGCGGAAGATTACACCCTGCAATTGGAGACGTCTTCG
GGCAAGTTTCAGCACATTGTTTGGCCCGAGCATTGCTTGATTGGCAGTCC
GGGTCATTGTGTGGTACCTCCTGTCTTGGCTGCAATTCACGCTTGGTCCG
CTCATACCCGCAAGCCCATTCGTTACTACTGGAAAGGCACCAACATCCGC
ACCGAAATGTACAGCGTTTTCAAAGCCGAAGTTCCCGTCCCTGGCTGTGC
GGAAACAGAAGTTAACGAAGCGTTGGTGCGGGAGTTAGTCGCGGAGCCTC
GGGTTATGATTTGTGGGCAAGCCTTGTCTCACTGTGTTAATTTTTCGACG
CGAGACCTTCTTGCGGCCTGGCCCGAGGGGAGGATGGATGACTTAACGTT
GTTGGCGGGGATGAGCTCTCCGGTGATAGGTTTTGAGGGGCAGGCAGTAG
AGTTCTTAGGCCTGTTGAAGGAAAAGGGGGTTCGGGTCGTGGCGGAGGTG
AAGTAGGAGGAATATAGAGAAAGGGGAAGAGGAGAGCGTATGTGGGCAAG
AAACATGCCAAAGACAAAGCGGGAATGTTTAAATAAAAAATTA
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protein sequence of jgi.p|Nanoce1779_2|537303

>mRNA_252-protein ID=mRNA_252-protein|Name=jgi.p|Nanoce1779_2|537303|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MEDGGDSFTPFALLIIDPQADFHQGGSLAVPGADDDAQRIQNFVEGNLDN
ITNIYVTLDSHQRVHISHPLFWKDANGASPAPFTPILHTDVVAGKWMAAD
ETLKAYAEDYTLQLETSSGKFQHIVWPEHCLIGSPGHCVVPPVLAAIHAW
SAHTRKPIRYYWKGTNIRTEMYSVFKAEVPVPGCAETEVNEALVRELVAE
PRVMICGQALSHCVNFSTRDLLAAWPEGRMDDLTLLAGMSSPVIGFEGQA
VEFLGLLKEKGVRVVAEVK*
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mRNA from alignment at scaffold_3:627929..629252-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_252 ID=mRNA_252|Name=jgi.p|Nanoce1779_2|537303|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp|location=Sequence derived from alignment at scaffold_3:627929..629252- (Nannochloropsis oceanica)
CAGCGTCAGAATTCCAGAACTATCTATCCCCTTGCAGCAGCCCAGCATGG
AGGACGGCGGCGACAGCTTCACTCCCTTCGCATTGCTTATCATTGATCCA
CAGGTGTGTTATCGGGCATGATAAGTCACCACCACAACCTTCCCATCTCC
TCGCCTTACTAAAAAAGCAGCTTTCCTCCCTTCGTTTTCCAGGCCGATTT
CCACCAGGGTGGCTCTTTGGCAGTGCCAGGTGCCGATGATGACGCGCAAC
GCATTCAGAATTTTGTGGAGGGGAACTTAGATAACATCACCAATATCTAC
GTGACGTTGGACTCCCATCAGGTGAGCAGATGGGCTCGGGTCGGAAGTGG
GAGACGGAGCTCCGAGCTCTGATGGATTTGATGAGTGCTGATCTAGCCGT
CCTTCAACATCGCAGCGGGTCCACATCAGTCACCCTTTATTCTGGAAAGA
TGCAAATGGGGCATCTCCGGCGCCTTTCACGCCTATCTTGCACACCGACG
TCGTGGCTGGGAAGTGGATGGCTGCAGACGAGACCCTGAAGGCGTATGCG
GAAGATTACACCCTGCAATTGGAGACGTCTTCGGGCAAGTTTCAGCACAT
TGTTTGGCCCGAGCATTGCTTGATTGGCAGTCCGGGTCATTGTGTGGTAC
CTCCTGTCTTGGCTGGTACGTGCGTGCATGGCCGTGTTACAAGGGTCATA
AAAGCGTTGAATGATGCAAACAATGGTTGGCGCGCAGAACATCTCCCATT
TGAGACCTAACACGCACTTTTCCGCGCCAACCTGTCTCCTACGGCTTGCT
ATTCTTAGCTGTATATAATTCTACGGTCTCTTGCTTACCTTTTCCTTTCT
TACCCCCCACCAGCAATTCACGCTTGGTCCGCTCATACCCGCAAGCCCAT
TCGTTACTACTGGAAAGGCACCAACATCCGCACCGAAATGTACAGCGTTT
TCAAAGCCGAAGTTCCCGTCCCTGGCTGTGCGGAAACAGAAGTTAACGAA
GCGTTGGTGCGGGAGTTAGTCGCGGAGCCTCGGGTTATGATTTGTGGGCA
AGCCTTGTCTCACTGTGTTAATTTTTCGACGCGAGACCTTCTTGCGGCCT
GGCCCGAGGGGAGGATGGATGACTTAACGTTGTTGGCGGGGATGAGCTCT
CCGGTGATAGGTTTTGAGGGGCAGGCAGTAGAGTTCTTAGGCCTGTTGAA
GGAAAAGGGGGTTCGGGTCGTGGCGGAGGTGAAGTAGGAGGAATATAGAG
AAAGGGGAAGAGGAGAGCGTATGTGGGCAAGAAACATGCCAAAGACAAAG
CGGGAATGTTTAAATAAAAAATTA
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Coding sequence (CDS) from alignment at scaffold_3:627929..629252-

>mRNA_252 ID=mRNA_252|Name=jgi.p|Nanoce1779_2|537303|organism=Nannochloropsis oceanica|type=CDS|length=3240bp|location=Sequence derived from alignment at scaffold_3:627929..629252- (Nannochloropsis oceanica)
CAATTCACGCTTGGTCCGCTCATACCCGCAAGCCCATTCGTTACTACTGG
AAAGGCACCAACATCCGCACCGAAATGTACAGCGTTTTCAAAGCCGAAGT
TCCCGTCCCTGGCTGTGCGGAAACAGAAGTTAACGAAGCGTTGGTGCGGG
AGTTAGTCGCGGAGCCTCGGGTTATGATTTGTGGGCAAGCCTTGTCTCAC
TGTGTTAATTTTTCGACGCGAGACCTTCTTGCGGCCTGGCCCGAGGGGAG
GATGGATGACTTAACGTTGTTGGCGGGGATGAGCTCTCCGGTGATAGGTT
TTGAGGGGCAGGCAGTAGAGTTCTTAGGCCTGTTGAAGGAAAAGGGGGTT
CGGGTCGTGGCGGAGGTGAAGTAGCGGGTCCACATCAGTCACCCTTTATT
CTGGAAAGATGCAAATGGGGCATCTCCGGCGCCTTTCACGCCTATCTTGC
ACACCGACGTCGTGGCTGGGAAGTGGATGGCTGCAGACGAGACCCTGAAG
GCGTATGCGGAAGATTACACCCTGCAATTGGAGACGTCTTCGGGCAAGTT
TCAGCACATTGTTTGGCCCGAGCATTGCTTGATTGGCAGTCCGGGTCATT
GTGTGGTACCTCCTGTCTTGGCTGGCCGATTTCCACCAGGGTGGCTCTTT
GGCAGTGCCAGGTGCCGATGATGACGCGCAACGCATTCAGAATTTTGTGG
AGGGGAACTTAGATAACATCACCAATATCTACGTGACGTTGGACTCCCAT
CAGATGGAGGACGGCGGCGACAGCTTCACTCCCTTCGCATTGCTTATCAT
TGATCCACAGCAATTCACGCTTGGTCCGCTCATACCCGCAAGCCCATTCG
TTACTACTGGAAAGGCACCAACATCCGCACCGAAATGTACAGCGTTTTCA
AAGCCGAAGTTCCCGTCCCTGGCTGTGCGGAAACAGAAGTTAACGAAGCG
TTGGTGCGGGAGTTAGTCGCGGAGCCTCGGGTTATGATTTGTGGGCAAGC
CTTGTCTCACTGTGTTAATTTTTCGACGCGAGACCTTCTTGCGGCCTGGC
CCGAGGGGAGGATGGATGACTTAACGTTGTTGGCGGGGATGAGCTCTCCG
GTGATAGGTTTTGAGGGGCAGGCAGTAGAGTTCTTAGGCCTGTTGAAGGA
AAAGGGGGTTCGGGTCGTGGCGGAGGTGAAGTAGCGGGTCCACATCAGTC
ACCCTTTATTCTGGAAAGATGCAAATGGGGCATCTCCGGCGCCTTTCACG
CCTATCTTGCACACCGACGTCGTGGCTGGGAAGTGGATGGCTGCAGACGA
GACCCTGAAGGCGTATGCGGAAGATTACACCCTGCAATTGGAGACGTCTT
CGGGCAAGTTTCAGCACATTGTTTGGCCCGAGCATTGCTTGATTGGCAGT
CCGGGTCATTGTGTGGTACCTCCTGTCTTGGCTGGCCGATTTCCACCAGG
GTGGCTCTTTGGCAGTGCCAGGTGCCGATGATGACGCGCAACGCATTCAG
AATTTTGTGGAGGGGAACTTAGATAACATCACCAATATCTACGTGACGTT
GGACTCCCATCAGATGGAGGACGGCGGCGACAGCTTCACTCCCTTCGCAT
TGCTTATCATTGATCCACAGCAATTCACGCTTGGTCCGCTCATACCCGCA
AGCCCATTCGTTACTACTGGAAAGGCACCAACATCCGCACCGAAATGTAC
AGCGTTTTCAAAGCCGAAGTTCCCGTCCCTGGCTGTGCGGAAACAGAAGT
TAACGAAGCGTTGGTGCGGGAGTTAGTCGCGGAGCCTCGGGTTATGATTT
GTGGGCAAGCCTTGTCTCACTGTGTTAATTTTTCGACGCGAGACCTTCTT
GCGGCCTGGCCCGAGGGGAGGATGGATGACTTAACGTTGTTGGCGGGGAT
GAGCTCTCCGGTGATAGGTTTTGAGGGGCAGGCAGTAGAGTTCTTAGGCC
TGTTGAAGGAAAAGGGGGTTCGGGTCGTGGCGGAGGTGAAGTAGCGGGTC
CACATCAGTCACCCTTTATTCTGGAAAGATGCAAATGGGGCATCTCCGGC
GCCTTTCACGCCTATCTTGCACACCGACGTCGTGGCTGGGAAGTGGATGG
CTGCAGACGAGACCCTGAAGGCGTATGCGGAAGATTACACCCTGCAATTG
GAGACGTCTTCGGGCAAGTTTCAGCACATTGTTTGGCCCGAGCATTGCTT
GATTGGCAGTCCGGGTCATTGTGTGGTACCTCCTGTCTTGGCTGGCCGAT
TTCCACCAGGGTGGCTCTTTGGCAGTGCCAGGTGCCGATGATGACGCGCA
ACGCATTCAGAATTTTGTGGAGGGGAACTTAGATAACATCACCAATATCT
ACGTGACGTTGGACTCCCATCAGATGGAGGACGGCGGCGACAGCTTCACT
CCCTTCGCATTGCTTATCATTGATCCACAGCAATTCACGCTTGGTCCGCT
CATACCCGCAAGCCCATTCGTTACTACTGGAAAGGCACCAACATCCGCAC
CGAAATGTACAGCGTTTTCAAAGCCGAAGTTCCCGTCCCTGGCTGTGCGG
AAACAGAAGTTAACGAAGCGTTGGTGCGGGAGTTAGTCGCGGAGCCTCGG
GTTATGATTTGTGGGCAAGCCTTGTCTCACTGTGTTAATTTTTCGACGCG
AGACCTTCTTGCGGCCTGGCCCGAGGGGAGGATGGATGACTTAACGTTGT
TGGCGGGGATGAGCTCTCCGGTGATAGGTTTTGAGGGGCAGGCAGTAGAG
TTCTTAGGCCTGTTGAAGGAAAAGGGGGTTCGGGTCGTGGCGGAGGTGAA
GTAGCGGGTCCACATCAGTCACCCTTTATTCTGGAAAGATGCAAATGGGG
CATCTCCGGCGCCTTTCACGCCTATCTTGCACACCGACGTCGTGGCTGGG
AAGTGGATGGCTGCAGACGAGACCCTGAAGGCGTATGCGGAAGATTACAC
CCTGCAATTGGAGACGTCTTCGGGCAAGTTTCAGCACATTGTTTGGCCCG
AGCATTGCTTGATTGGCAGTCCGGGTCATTGTGTGGTACCTCCTGTCTTG
GCTGGCCGATTTCCACCAGGGTGGCTCTTTGGCAGTGCCAGGTGCCGATG
ATGACGCGCAACGCATTCAGAATTTTGTGGAGGGGAACTTAGATAACATC
ACCAATATCTACGTGACGTTGGACTCCCATCAGATGGAGGACGGCGGCGA
CAGCTTCACTCCCTTCGCATTGCTTATCATTGATCCACAG
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Synonyms
Publications