|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 580723 |
| Track | FilteredModels2 |
| ProteinId | 580637 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:539736..541217 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2518 ID=mRNA_2518|Name=jgi.p|Nanoce1779_2|580637|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp
GCCCTGTTCAAGGCATCGGATGCTATTGGGCAAATAGAAGCGTTCTCCAT
CCTTCGCTCTAATGCTCGCACCGTAATCACTGCCGATATCACGGGCGGTA
AGAGCGGTACGTACCCGTGGGGCCTCGTCCTCCTCCTACAGATATGCTTG
GTGCTGAGCGACCCGGCTTCAGCAGCGATTGCTTCCACCGGGCAGGTTAT
TTGGGTGCTGGAGGTGTTGGACACGGTGGCCGCATTGGTAGGCCCTGCCT
CGCCCCCATCCATTCTACAAGATACCCTGTTGCAGGCGTCGGGGAATCTA
CAAGCGGTGTTAGAGGATGATGTAGAGGAGGGATGGTTGAAGGAGGCTAG
GGATTGGATAATGAAGGCCTTAGGTAGGCAGAAGGAACGTGCGAAACAAC
GGGCAAAGGAAATGGCATCCTTGGGAATAGGAAGTTGCAGCGACAAAAGT
AACAGCACAGATAGTAGCAGTGAGACCCCTGCTTTAGGCTCCAAAAGGGG
GGAACAGATCCAAAACAAGCAGCAGCAGCATCAAGAAGAGAACCGTCTCG
CATTCCTCATCAACCTGGCCTTCGCTATGTGCATCCAAACTCGACGACCC
GCTCCTCACCACTACGTCGCCGAGCTAACCCGTTTTTTGCTACAAGAAGT
CCTATGTCCTTACTTCCCGAAACGGGGAGTGGCCCAAGCCCAGGTACACA
GGTGCTTGCGCAGCCTCATCTCTCACCCTAATCTGTTAGCCTACCGGGCA
GGGCGGATAAGGCACTGGGACGAGGCCCGGCGGCGAGTAATGGCTACCTA
TGTCCGAGTGTCTCTGGAAGCTTACCCAACCAGCACCGCTTTCCAAGACC
TGGCTTACTGTGTAGGGGCAGTTATTGGTGCCACCCCAACAGAGGGGGAC
CCTGGCGGCCAAGCCCTCCTCCTGCATTGCCTACACCTGATTCAAGACCG
GGCTCTTGCTCTTCTTCGGCGCGAGATTCCGGGTGAAAAAGGCATGCGCG
AGGGTGGGATGGACCCTGGCCCTGCACAGCTTCGGCGACCAGAGACGCGA
AAATTGGTCAAGCTTCTATTTCAAACCCTCCTTGTGTGCCCGTTTTCGGT
GTTGGAGGTGGCATTGCAGAGTTTGGGCAAGAATTTTTTATTGCAAGGCT
TTGAAGGTCGGCCAGAAAGCTACGTGGCCGTGCTGCGAGTACTCAAGGAT
GTAGTGTTCGGGGACGTCGAGACCATGCGACAAAGTGTGCTGGCTAAATG
GTACCTCACCCACTTGCGGGAGAAGGAAAACCTCCATCAAGAAGAGCGCA
GTACTGGAGTCAAACATCGGGCAACATCAGGAATGACCATCACAAGTCGA
TTATGACATGGAAGGGGGAGGAGAAAGTGTTATGCAGAAGCATCGGCACA
AAAGCTGGGAACAAAGAACTCCAAAGTAACGTGTACATCAAGGAAGGAAG
AACTTTAAAACATGTACAAAGAGGCATGCCCT back to topprotein sequence of jgi.p|Nanoce1779_2|580637 >mRNA_2518-protein ID=mRNA_2518-protein|Name=jgi.p|Nanoce1779_2|580637|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MKALGRQKERAKQRAKEMASLGIGSCSDKSNSTDSSSETPALGSKRGEQI
QNKQQQHQEENRLAFLINLAFAMCIQTRRPAPHHYVAELTRFLLQEVLCP
YFPKRGVAQAQVHRCLRSLISHPNLLAYRAGRIRHWDEARRRVMATYVRV
SLEAYPTSTAFQDLAYCVGAVIGATPTEGDPGGQALLLHCLHLIQDRALA
LLRREIPGEKGMREGGMDPGPAQLRRPETRKLVKLLFQTLLVCPFSVLEV
ALQSLGKNFLLQGFEGRPESYVAVLRVLKDVVFGDVETMRQSVLAKWYLT
HLREKENLHQEERSTGVKHRATSGMTITSRL* back to topmRNA from alignment at scaffold_5:539736..541217- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2518 ID=mRNA_2518|Name=jgi.p|Nanoce1779_2|580637|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp|location=Sequence derived from alignment at scaffold_5:539736..541217- (Nannochloropsis oceanica)
GCCCTGTTCAAGGCATCGGATGCTATTGGGCAAATAGAAGCGTTCTCCAT
CCTTCGCTCTAATGCTCGCACCGTAATCACTGCCGATATCACGGGCGGTA
AGAGCGGTACGTACCCGTGGGGCCTCGTCCTCCTCCTACAGATATGCTTG
GTGCTGAGCGACCCGGCTTCAGCAGCGATTGCTTCCACCGGGCAGGTTAT
TTGGGTGCTGGAGGTGTTGGACACGGTGGCCGCATTGGTAGGCCCTGCCT
CGCCCCCATCCATTCTACAAGATACCCTGTTGCAGGCGTCGGGGAATCTA
CAAGCGGTGTTAGAGGATGATGTAGAGGAGGGATGGTTGAAGGAGGCTAG
GGATTGGATAATGAAGGCCTTAGGTAGGCAGAAGGAACGTGCGAAACAAC
GGGCAAAGGAAATGGCATCCTTGGGAATAGGAAGTTGCAGCGACAAAAGT
AACAGCACAGATAGTAGCAGTGAGACCCCTGCTTTAGGCTCCAAAAGGGG
GGAACAGATCCAAAACAAGCAGCAGCAGCATCAAGAAGAGAACCGTCTCG
CATTCCTCATCAACCTGGCCTTCGCTATGTGCATCCAAACTCGACGACCC
GCTCCTCACCACTACGTCGCCGAGCTAACCCGTTTTTTGCTACAAGAAGT
CCTATGTCCTTACTTCCCGAAACGGGGAGTGGCCCAAGCCCAGGTACACA
GGTGCTTGCGCAGCCTCATCTCTCACCCTAATCTGTTAGCCTACCGGGCA
GGGCGGATAAGGCACTGGGACGAGGCCCGGCGGCGAGTAATGGCTACCTA
TGTCCGAGTGTCTCTGGAAGCTTACCCAACCAGCACCGCTTTCCAAGACC
TGGCTTACTGTGTAGGGGCAGTTATTGGTGCCACCCCAACAGAGGGGGAC
CCTGGCGGCCAAGCCCTCCTCCTGCATTGCCTACACCTGATTCAAGACCG
GGCTCTTGCTCTTCTTCGGCGCGAGATTCCGGGTGAAAAAGGCATGCGCG
AGGGTGGGATGGACCCTGGCCCTGCACAGCTTCGGCGACCAGAGACGCGA
AAATTGGTCAAGCTTCTATTTCAAACCCTCCTTGTGTGCCCGTTTTCGGT
GTTGGAGGTGGCATTGCAGAGTTTGGGCAAGAATTTTTTATTGCAAGGCT
TTGAAGGTCGGCCAGAAAGCTACGTGGCCGTGCTGCGAGTACTCAAGGAT
GTAGTGTTCGGGGACGTCGAGACCATGCGACAAAGTGTGCTGGCTAAATG
GTACCTCACCCACTTGCGGGAGAAGGAAAACCTCCATCAAGAAGAGCGCA
GTACTGGAGTCAAACATCGGGCAACATCAGGAATGACCATCACAAGTCGA
TTATGACATGGAAGGGGGAGGAGAAAGTGTTATGCAGAAGCATCGGCACA
AAAGCTGGGAACAAAGAACTCCAAAGTAACGTGTACATCAAGGAAGGAAG
AACTTTAAAACATGTACAAAGAGGCATGCCCT back to topCoding sequence (CDS) from alignment at scaffold_5:539736..541217- >mRNA_2518 ID=mRNA_2518|Name=jgi.p|Nanoce1779_2|580637|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_5:539736..541217- (Nannochloropsis oceanica)
ATGAAGGCCTTAGGTAGGCAGAAGGAACGTGCGAAACAACGGGCAAAGGA
AATGGCATCCTTGGGAATAGGAAGTTGCAGCGACAAAAGTAACAGCACAG
ATAGTAGCAGTGAGACCCCTGCTTTAGGCTCCAAAAGGGGGGAACAGATC
CAAAACAAGCAGCAGCAGCATCAAGAAGAGAACCGTCTCGCATTCCTCAT
CAACCTGGCCTTCGCTATGTGCATCCAAACTCGACGACCCGCTCCTCACC
ACTACGTCGCCGAGCTAACCCGTTTTTTGCTACAAGAAGTCCTATGTCCT
TACTTCCCGAAACGGGGAGTGGCCCAAGCCCAGGTACACAGGTGCTTGCG
CAGCCTCATCTCTCACCCTAATCTGTTAGCCTACCGGGCAGGGCGGATAA
GGCACTGGGACGAGGCCCGGCGGCGAGTAATGGCTACCTATGTCCGAGTG
TCTCTGGAAGCTTACCCAACCAGCACCGCTTTCCAAGACCTGGCTTACTG
TGTAGGGGCAGTTATTGGTGCCACCCCAACAGAGGGGGACCCTGGCGGCC
AAGCCCTCCTCCTGCATTGCCTACACCTGATTCAAGACCGGGCTCTTGCT
CTTCTTCGGCGCGAGATTCCGGGTGAAAAAGGCATGCGCGAGGGTGGGAT
GGACCCTGGCCCTGCACAGCTTCGGCGACCAGAGACGCGAAAATTGGTCA
AGCTTCTATTTCAAACCCTCCTTGTGTGCCCGTTTTCGGTGTTGGAGGTG
GCATTGCAGAGTTTGGGCAAGAATTTTTTATTGCAAGGCTTTGAAGGTCG
GCCAGAAAGCTACGTGGCCGTGCTGCGAGTACTCAAGGATGTAGTGTTCG
GGGACGTCGAGACCATGCGACAAAGTGTGCTGGCTAAATGGTACCTCACC
CACTTGCGGGAGAAGGAAAACCTCCATCAAGAAGAGCGCAGTACTGGAGT
CAAACATCGGGCAACATCAGGAATGACCATCACAAGTCGATTATGA back to top
|