jgi.p|Nanoce1779_2|580636, mRNA_2517 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580636
Unique NamemRNA_2517
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length185
Alignment locationscaffold_5:538849..539033 +

Link to JBrowse

Properties
Property NameValue
TranscriptId580722
TrackFilteredModels2
ProteinId580636
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:538849..539033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580636gene_2517Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580636mRNA_2517-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2517CDS_2517Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2517 ID=mRNA_2517|Name=jgi.p|Nanoce1779_2|580636|organism=Nannochloropsis oceanica|type=mRNA|length=185bp
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTGTTTGTGT
GGGTGTGTGTGGGTGTGGGTGTGTGGGTGGGTGGGTGTGTGGGTGTGGGT
TTGGGTGTGTGGGTGTGTGGGTGTTCGTGTGGGTAGGTGCGTGGATGGAG
ATGGCTGGAAAGCGTCAGGGTACTGTAGACAGTGA
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protein sequence of jgi.p|Nanoce1779_2|580636

>mRNA_2517-protein ID=mRNA_2517-protein|Name=jgi.p|Nanoce1779_2|580636|organism=Nannochloropsis oceanica|type=polypeptide|length=61bp
VCVCVCVCVCVCVFVCVGVCGCGCVGGWVCGCGFGCVGVWVFVWVGAWME
MAGKRQGTVDS
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mRNA from alignment at scaffold_5:538849..539033+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2517 ID=mRNA_2517|Name=jgi.p|Nanoce1779_2|580636|organism=Nannochloropsis oceanica|type=mRNA|length=185bp|location=Sequence derived from alignment at scaffold_5:538849..539033+ (Nannochloropsis oceanica)
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTGTTTGTGT
GGGTGTGTGTGGGTGTGGGTGTGTGGGTGGGTGGGTGTGTGGGTGTGGGT
TTGGGTGTGTGGGTGTGTGGGTGTTCGTGTGGGTAGGTGCGTGGATGGAG
ATGGCTGGAAAGCGTCAGGGTACTGTAGACAGTGA
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Coding sequence (CDS) from alignment at scaffold_5:538849..539033+

>mRNA_2517 ID=mRNA_2517|Name=jgi.p|Nanoce1779_2|580636|organism=Nannochloropsis oceanica|type=CDS|length=185bp|location=Sequence derived from alignment at scaffold_5:538849..539033+ (Nannochloropsis oceanica)
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTGTTTGTGT
GGGTGTGTGTGGGTGTGGGTGTGTGGGTGGGTGGGTGTGTGGGTGTGGGT
TTGGGTGTGTGGGTGTGTGGGTGTTCGTGTGGGTAGGTGCGTGGATGGAG
ATGGCTGGAAAGCGTCAGGGTACTGTAGACAGTGA
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Synonyms
Publications