Properties
| Property Name | Value |
|---|
| TranscriptId | 580720 |
| Track | FilteredModels2 |
| ProteinId | 580634 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:536808..538800 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2516 ID=mRNA_2516|Name=jgi.p|Nanoce1779_2|580634|organism=Nannochloropsis oceanica|type=mRNA|length=1384bp
ACAGAGCAAGCGGGCCTCTTCTTGGCCTTGCTTTGGAGGAGGACCGAGGA
GGACGGGACGCACACTTGTGTAAACAGCCATCAGGAGCACTACAACCGGG
AATAGAAATACATAACATGGCAGACATGCACTCGACATCGGCAGCTGGTG
AGCTCGAAGAGCTGATGCAGGACACAGTCAAGTTTATCGGTGGTGTGGCA
GACAAGCTTTGGACTGCGGGGACCTCGGCCAAGGACATGCTGTTGGATGG
GGAGAAGAAGGGAGATGGCAACAAAAGCAAAGAAAGGAGTAGCCTAGGCT
TTTACGAATGCAATGGTGTCATGGAGACCAAGTCGTTTGAAGATCTGGAC
ATGCTGGAAAGTGGACATGCGCGTGAATACATTACCGACGAGTGTCTGCT
GCCCTGTCCGACCCTGAAGCGGTGGTCGACCTGCAACGTCGTCAAGGACG
GCAAGACCGCCTTTCGCATGTACCTAGATGAAACTCATACCCGCTTTATG
CTAAGCGCCAAGCGAGTGGGTGACTCCTTTTACATTTCCCAGTACGAATC
CTTCCCCGATAGCGTGGATGACGTGCCCGACCTTTATTACTGCGCGGTGC
TACGGACCTGCTCGGAGGGGCACTTCAAGCTTTTTCTGAACGGCTGTGAA
GCGTGCGATAGAAAGACAGACAAATACACGTGTGGCTCCGGGGATCGATG
CGATGACCGTCAGCTCTTGGCGGAGATCAATCATTCCGTGCGAAGAGTCA
AGGAGGCTAACGCGGACATGCGCTGTCTCTCAATCAAATTGCCCAAGATT
CACGAAGACAAACAGTCCAGGGAGGTTTGGTGCCCCAGAATGAACCAATT
GCGGAGGCAGGTAGGAGACCTCGACAAAGCCGGGCACGTCCGCTTGATGA
ATAAGCTTCCCGAATGGAACGAAGCACTGCAAAGTCTAGTCCTCCGATTC
AATAAGGGAAGAGTACTAGCGCCTTCGGCCAAGAACTTCTTGATATGTAT
GATGGCTGGGCAGGATAAGCGGGAGGGGGTGTTGCAGTTTGGAAAGACTC
GCAAAAGGCGGTATGCTTTGGACTTCCGTCATCCTATCAGTCCTCTGCAG
GCTTTTGGGATCTGTCTTTCATTATTTAAATGGAACATCTAGGGTGGAGA
CTGTGTGTGTATGTGCGGTGCAGATCGTACGGTCTCACCGGAAAGGTCAA
GGTGAAGATCCACCTATGACTTTTTTTTAGGGCCGGCACGGCTAGTGGCT
TTCTCGATACATCCAGTAGACAAAATTTTAATGATTGAGGGGAAGGAGTA
CAGGAAGTAGTAAAATGAATCGAATTGCTAACGAACAAAATTCCCGTAAG
CATTTGTTTTTTGCCCACGCTTCCTTATTTGGTG back to topprotein sequence of jgi.p|Nanoce1779_2|580634 >mRNA_2516-protein ID=mRNA_2516-protein|Name=jgi.p|Nanoce1779_2|580634|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MADMHSTSAAGELEELMQDTVKFIGGVADKLWTAGTSAKDMLLDGEKKGD
GNKSKERSSLGFYECNGVMETKSFEDLDMLESGHAREYITDECLLPCPTL
KRWSTCNVVKDGKTAFRMYLDETHTRFMLSAKRVGDSFYISQYESFPDSV
DDVPDLYYCAVLRTCSEGHFKLFLNGCEACDRKTDKYTCGSGDRCDDRQL
LAEINHSVRRVKEANADMRCLSIKLPKIHEDKQSREVWCPRMNQLRRQVG
DLDKAGHVRLMNKLPEWNEALQSLVLRFNKGRVLAPSAKNFLICMMAGQD
KREGVLQFGKTRKRRYALDFRHPISPLQAFGICLSLFKWNI* back to topmRNA from alignment at scaffold_5:536808..538800- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2516 ID=mRNA_2516|Name=jgi.p|Nanoce1779_2|580634|organism=Nannochloropsis oceanica|type=mRNA|length=1993bp|location=Sequence derived from alignment at scaffold_5:536808..538800- (Nannochloropsis oceanica)
ACAGAGCAAGCGGGCCTCTTCTTGGCCTTGCTTTGGAGGAGGACCGAGGA
GGACGGGACGCACACTTGTGTAAACAGCCATCAGGAGCACTACAACCGGG
AATAGAAATACATAACATGGCAGACATGCACTCGACATCGGCAGCTGGTG
AGCTCGAAGAGCTGATGCAGGACACAGTCAAGTTTATCGGTGGTGTGGCA
GACAAGCTTTGGACTGCGGGGACCTCGGCCAAGGACATGCTGTTGGATGG
GGAGAAGAAGGGAGATGGCAACAAAAGCAAAGAAAGGAGTAGCCTAGGCT
TTTACGAATGCAATGGTGTCATGGAGACCAAGTCGTTTGAAGATCTGGAC
ATGCTGGTAAGGACCAAGGCCGGAGAATCTGCGCAACTGGCGTGGCACCA
GATTTTGGCTCCCAATGCTCGACAATTACATCCATTCCAACTCGACGATT
TCACCGACATCCCATTCTCCAATTTCTTCTGCCCCGTCTTCCTATCATCT
CTTCTGACTTCACAGGAAAGTGGACATGCGCGTGAATACATTACCGACGA
GTGTCTGCTGCCCTGTCCGACCCTGAAGCGGTGGTCGACCTGCAACGTCG
TCAAGGACGGCAAGACCGCCTTTCGCATGTACCTAGATGAAACTCATACC
CGCTTTATGCTAAGCGCCAAGCGAGTGGGTGACTCCTTTTACATTTCCCA
GTACGAATCCTTCCCCGATAGCGTGGATGACGTGCCCGACCTTTATTACT
GCGCGGTGCTACGGACCTGCTCGGAGGGGCACTTCAAGCTTTTTCTGAAC
GGCTGTGAAGCGTGCGATAGAAAGACAGACAAATACACGTGTGGCTCCGG
GGATCGATGCGATGACCGTCAGCTCTTGGCGGAGATCAATCATGTAAGCG
TTCCTGTCTCTCTTGGAGGATGGAACTTTATTTGAATGTGGAATGACGTC
GTACGTCAGAGAAGTGAAACATGAGGCAAACTTCAAATGATTGCGTCCCT
CATTCTCTCCTTGAACTAGAAACGAGTGTCACTTTTCCCATGGTATAACA
TTGAGGACCTCCACTGTCGCATCCTCAATTTGACTGAATACATTCTTTCA
TCACCTCTTTACCCTTCTCCTACCCGTCCCCATAGTCCGTGCGAAGAGTC
AAGGAGGCTAACGCGGACATGCGCTGTCTCTCAATCAAATTGCCCAAGAT
TCACGAAGACAAACAGTCCAGGGAGGTTTGGTGGTAAGTTTCATTCATAC
TTACATACGGGCGTACGTGTATGTGAGACATCCATGTCTAATTTCTCCTT
GATGACTTTTGATGTCATAAGAGGGGAAAGGATGATGTATGGGAAGAGGA
AAATGTTAGAGAGGATCTGTCAACCAATCATCTTCTCAACCTTGCCCCTC
TTCTTTCTTCTCCCCCCTTAAATCCAATTCCTACCACACAGCCCCAGAAT
GAACCAATTGCGGAGGCAGGTAGGAGACCTCGACAAAGCCGGGCACGTCC
GCTTGATGAATAAGCTTCCCGAATGGAACGAAGCACTGCAAAGTCTAGTC
CTCCGATTCAATAAGGGAAGAGTACTAGCGCCTTCGGCCAAGAACTTCTT
GATATGTATGATGGCTGGGCAGGATAAGCGGGAGGGGGTGTTGCAGTTTG
GAAAGACTCGCAAAAGGCGGTATGCTTTGGACTTCCGTCATCCTATCAGT
CCTCTGCAGGCTTTTGGGATCTGTCTTTCATTATTTAAATGGAACATCTA
GGGTGGAGACTGTGTGTGTATGTGCGGTGCAGATCGTACGGTCTCACCGG
AAAGGTCAAGGTGAAGATCCACCTATGACTTTTTTTTAGGGCCGGCACGG
CTAGTGGCTTTCTCGATACATCCAGTAGACAAAATTTTAATGATTGAGGG
GAAGGAGTACAGGAAGTAGTAAAATGAATCGAATTGCTAACGAACAAAAT
TCCCGTAAGCATTTGTTTTTTGCCCACGCTTCCTTATTTGGTG back to topCoding sequence (CDS) from alignment at scaffold_5:536808..538800- >mRNA_2516 ID=mRNA_2516|Name=jgi.p|Nanoce1779_2|580634|organism=Nannochloropsis oceanica|type=CDS|length=4104bp|location=Sequence derived from alignment at scaffold_5:536808..538800- (Nannochloropsis oceanica)
CCCCAGAATGAACCAATTGCGGAGGCAGGTAGGAGACCTCGACAAAGCCG
GGCACGTCCGCTTGATGAATAAGCTTCCCGAATGGAACGAAGCACTGCAA
AGTCTAGTCCTCCGATTCAATAAGGGAAGAGTACTAGCGCCTTCGGCCAA
GAACTTCTTGATATGTATGATGGCTGGGCAGGATAAGCGGGAGGGGGTGT
TGCAGTTTGGAAAGACTCGCAAAAGGCGGTATGCTTTGGACTTCCGTCAT
CCTATCAGTCCTCTGCAGGCTTTTGGGATCTGTCTTTCATTATTTAAATG
GAACATCTAGTCCGTGCGAAGAGTCAAGGAGGCTAACGCGGACATGCGCT
GTCTCTCAATCAAATTGCCCAAGATTCACGAAGACAAACAGTCCAGGGAG
GTTTGGTGGAAAGTGGACATGCGCGTGAATACATTACCGACGAGTGTCTG
CTGCCCTGTCCGACCCTGAAGCGGTGGTCGACCTGCAACGTCGTCAAGGA
CGGCAAGACCGCCTTTCGCATGTACCTAGATGAAACTCATACCCGCTTTA
TGCTAAGCGCCAAGCGAGTGGGTGACTCCTTTTACATTTCCCAGTACGAA
TCCTTCCCCGATAGCGTGGATGACGTGCCCGACCTTTATTACTGCGCGGT
GCTACGGACCTGCTCGGAGGGGCACTTCAAGCTTTTTCTGAACGGCTGTG
AAGCGTGCGATAGAAAGACAGACAAATACACGTGTGGCTCCGGGGATCGA
TGCGATGACCGTCAGCTCTTGGCGGAGATCAATCATATGGCAGACATGCA
CTCGACATCGGCAGCTGGTGAGCTCGAAGAGCTGATGCAGGACACAGTCA
AGTTTATCGGTGGTGTGGCAGACAAGCTTTGGACTGCGGGGACCTCGGCC
AAGGACATGCTGTTGGATGGGGAGAAGAAGGGAGATGGCAACAAAAGCAA
AGAAAGGAGTAGCCTAGGCTTTTACGAATGCAATGGTGTCATGGAGACCA
AGTCGTTTGAAGATCTGGACATGCTGCCCCAGAATGAACCAATTGCGGAG
GCAGGTAGGAGACCTCGACAAAGCCGGGCACGTCCGCTTGATGAATAAGC
TTCCCGAATGGAACGAAGCACTGCAAAGTCTAGTCCTCCGATTCAATAAG
GGAAGAGTACTAGCGCCTTCGGCCAAGAACTTCTTGATATGTATGATGGC
TGGGCAGGATAAGCGGGAGGGGGTGTTGCAGTTTGGAAAGACTCGCAAAA
GGCGGTATGCTTTGGACTTCCGTCATCCTATCAGTCCTCTGCAGGCTTTT
GGGATCTGTCTTTCATTATTTAAATGGAACATCTAGTCCGTGCGAAGAGT
CAAGGAGGCTAACGCGGACATGCGCTGTCTCTCAATCAAATTGCCCAAGA
TTCACGAAGACAAACAGTCCAGGGAGGTTTGGTGGAAAGTGGACATGCGC
GTGAATACATTACCGACGAGTGTCTGCTGCCCTGTCCGACCCTGAAGCGG
TGGTCGACCTGCAACGTCGTCAAGGACGGCAAGACCGCCTTTCGCATGTA
CCTAGATGAAACTCATACCCGCTTTATGCTAAGCGCCAAGCGAGTGGGTG
ACTCCTTTTACATTTCCCAGTACGAATCCTTCCCCGATAGCGTGGATGAC
GTGCCCGACCTTTATTACTGCGCGGTGCTACGGACCTGCTCGGAGGGGCA
CTTCAAGCTTTTTCTGAACGGCTGTGAAGCGTGCGATAGAAAGACAGACA
AATACACGTGTGGCTCCGGGGATCGATGCGATGACCGTCAGCTCTTGGCG
GAGATCAATCATATGGCAGACATGCACTCGACATCGGCAGCTGGTGAGCT
CGAAGAGCTGATGCAGGACACAGTCAAGTTTATCGGTGGTGTGGCAGACA
AGCTTTGGACTGCGGGGACCTCGGCCAAGGACATGCTGTTGGATGGGGAG
AAGAAGGGAGATGGCAACAAAAGCAAAGAAAGGAGTAGCCTAGGCTTTTA
CGAATGCAATGGTGTCATGGAGACCAAGTCGTTTGAAGATCTGGACATGC
TGCCCCAGAATGAACCAATTGCGGAGGCAGGTAGGAGACCTCGACAAAGC
CGGGCACGTCCGCTTGATGAATAAGCTTCCCGAATGGAACGAAGCACTGC
AAAGTCTAGTCCTCCGATTCAATAAGGGAAGAGTACTAGCGCCTTCGGCC
AAGAACTTCTTGATATGTATGATGGCTGGGCAGGATAAGCGGGAGGGGGT
GTTGCAGTTTGGAAAGACTCGCAAAAGGCGGTATGCTTTGGACTTCCGTC
ATCCTATCAGTCCTCTGCAGGCTTTTGGGATCTGTCTTTCATTATTTAAA
TGGAACATCTAGTCCGTGCGAAGAGTCAAGGAGGCTAACGCGGACATGCG
CTGTCTCTCAATCAAATTGCCCAAGATTCACGAAGACAAACAGTCCAGGG
AGGTTTGGTGGAAAGTGGACATGCGCGTGAATACATTACCGACGAGTGTC
TGCTGCCCTGTCCGACCCTGAAGCGGTGGTCGACCTGCAACGTCGTCAAG
GACGGCAAGACCGCCTTTCGCATGTACCTAGATGAAACTCATACCCGCTT
TATGCTAAGCGCCAAGCGAGTGGGTGACTCCTTTTACATTTCCCAGTACG
AATCCTTCCCCGATAGCGTGGATGACGTGCCCGACCTTTATTACTGCGCG
GTGCTACGGACCTGCTCGGAGGGGCACTTCAAGCTTTTTCTGAACGGCTG
TGAAGCGTGCGATAGAAAGACAGACAAATACACGTGTGGCTCCGGGGATC
GATGCGATGACCGTCAGCTCTTGGCGGAGATCAATCATATGGCAGACATG
CACTCGACATCGGCAGCTGGTGAGCTCGAAGAGCTGATGCAGGACACAGT
CAAGTTTATCGGTGGTGTGGCAGACAAGCTTTGGACTGCGGGGACCTCGG
CCAAGGACATGCTGTTGGATGGGGAGAAGAAGGGAGATGGCAACAAAAGC
AAAGAAAGGAGTAGCCTAGGCTTTTACGAATGCAATGGTGTCATGGAGAC
CAAGTCGTTTGAAGATCTGGACATGCTGCCCCAGAATGAACCAATTGCGG
AGGCAGGTAGGAGACCTCGACAAAGCCGGGCACGTCCGCTTGATGAATAA
GCTTCCCGAATGGAACGAAGCACTGCAAAGTCTAGTCCTCCGATTCAATA
AGGGAAGAGTACTAGCGCCTTCGGCCAAGAACTTCTTGATATGTATGATG
GCTGGGCAGGATAAGCGGGAGGGGGTGTTGCAGTTTGGAAAGACTCGCAA
AAGGCGGTATGCTTTGGACTTCCGTCATCCTATCAGTCCTCTGCAGGCTT
TTGGGATCTGTCTTTCATTATTTAAATGGAACATCTAGTCCGTGCGAAGA
GTCAAGGAGGCTAACGCGGACATGCGCTGTCTCTCAATCAAATTGCCCAA
GATTCACGAAGACAAACAGTCCAGGGAGGTTTGGTGGAAAGTGGACATGC
GCGTGAATACATTACCGACGAGTGTCTGCTGCCCTGTCCGACCCTGAAGC
GGTGGTCGACCTGCAACGTCGTCAAGGACGGCAAGACCGCCTTTCGCATG
TACCTAGATGAAACTCATACCCGCTTTATGCTAAGCGCCAAGCGAGTGGG
TGACTCCTTTTACATTTCCCAGTACGAATCCTTCCCCGATAGCGTGGATG
ACGTGCCCGACCTTTATTACTGCGCGGTGCTACGGACCTGCTCGGAGGGG
CACTTCAAGCTTTTTCTGAACGGCTGTGAAGCGTGCGATAGAAAGACAGA
CAAATACACGTGTGGCTCCGGGGATCGATGCGATGACCGTCAGCTCTTGG
CGGAGATCAATCATATGGCAGACATGCACTCGACATCGGCAGCTGGTGAG
CTCGAAGAGCTGATGCAGGACACAGTCAAGTTTATCGGTGGTGTGGCAGA
CAAGCTTTGGACTGCGGGGACCTCGGCCAAGGACATGCTGTTGGATGGGG
AGAAGAAGGGAGATGGCAACAAAAGCAAAGAAAGGAGTAGCCTAGGCTTT
TACGAATGCAATGGTGTCATGGAGACCAAGTCGTTTGAAGATCTGGACAT
GCTG back to top
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