jgi.p|Nanoce1779_2|330773, mRNA_2515 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|330773
Unique NamemRNA_2515
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1344
Alignment locationscaffold_5:534653..536174 -

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Properties
Property NameValue
TranscriptId330859
TrackFilteredModels2
ProteinId330773
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:534653..536174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|330773gene_2515Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|330773mRNA_2515-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2515CDS_2515Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2515 ID=mRNA_2515|Name=jgi.p|Nanoce1779_2|330773|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp
AACCGCTAGTCTGTCTCCCCGATTCCAAGCCCGGAGGCAAACATATACTC
TACACGTGCAGAGAGCAGAGATATTAAAGAGGGTCTGAAACTGTGGTCGA
CTGAGAGCGAAAGAAACGTCCCAATAACGACACCGAAGGATAAAGATAGA
CAAGCGTGTATAGAATCAGAACTAGAAGGTGAAAAAAAAGGAGGAACGAT
CGACAAGCTACGAAGCAACGAACATGCTGACTACAAGGCCAATGTCGACA
ACTCCTCGCATGGGGAGGCAGCTGCAGCGTTACGAAGGCGATGTGCGGCT
TATCAGTGGATGCATTCCCCTGACGCAAGATGGCAACGTCGTCTTAATCA
GCTCGAGGAGTGGAAGATGGATTCTTCCCAAGGGAGGATGGGAAAGGGAC
GAGACAGCGCGGGAGGCAGCGGCCAGGGAGACATACGAGGAGAGTGGAGT
GCGTGGGTTTGTGGGCCTTGAACCTTTGGCTGAAATTTCATATCGAAGCA
AGAGAGGTGAGGCGTGCCAACTGTTGCTGTTCATGATGGAGGTGACAGAG
ATACTGACGGAGTGGCCTGAATCTTCGGTGCGGCAGCGGAAGCTTTTCTC
CTTGAGCGACGCTATCAACGTGTGTGGAAAGGAGGAGCACCGAGGCGCGC
TACGTGAACTTTTGCAAATCTTGCCACATTACCAGCTGCACGGTGCAGGT
AGCCACCTTGACACCAACTTTGGGCCCAGGCTGAGAGCTGATGCCGCGAT
GCCAACGGTGGCAACATGTACCCGCAGCAGCAGCAGCGCGATGCAACAGG
TGGCAACATGTGCCCCCAGCAGCAGCGGCAGCAGCAGCAGCAGTAGCAGC
AGCAGCAGCAGCAGCAGCGGTGGGAATGTGGCGGGGCCCATGTCCATCTC
CTCCAGGCGCTTGGTTGTCGATGACCAAAAGGAGTAGGCCGTGCAGAAAC
AAGAACAAGGAATAAGAAGAAGACATTGTTGATATATTATAAAAAGGAGG
AAGGGCTTAAGGGTTTACTTAGAATGTGCGGACAGGTTTCTGGGACATTA
ATGGCAGATACGGAGAAAAGAGTCAAAGGTAGAGAACTTTTAATGTGTAG
TAGACATTTTTAATCATTTAATTTTATTCAGGTCTGGATGGTTTTGATGA
ACACCAAGAAAGGAGCTCGGCTGCGTTGTCCTCCGAGGCAGGAGGTTGGT
TTTGACGGGAGTAGCAACGATGAAGTGAAACAACCTTGAAGCGGTTGGAG
GATGTGTCCTCTAGTTCAGGCTGGTCACTGCTACTCTTAATTCTCGCTCT
AGGTTTTGCTGCCCCCTCTCGCTCTTTATTTTATTGATATGTTT
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protein sequence of jgi.p|Nanoce1779_2|330773

>mRNA_2515-protein ID=mRNA_2515-protein|Name=jgi.p|Nanoce1779_2|330773|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MLTTRPMSTTPRMGRQLQRYEGDVRLISGCIPLTQDGNVVLISSRSGRWI
LPKGGWERDETAREAAARETYEESGVRGFVGLEPLAEISYRSKRGEACQL
LLFMMEVTEILTEWPESSVRQRKLFSLSDAINVCGKEEHRGALRELLQIL
PHYQLHGAGSHLDTNFGPRLRADAAMPTVATCTRSSSSAMQQVATCAPSS
SGSSSSSSSSSSSSSGGNVAGPMSISSRRLVVDDQKE*
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mRNA from alignment at scaffold_5:534653..536174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2515 ID=mRNA_2515|Name=jgi.p|Nanoce1779_2|330773|organism=Nannochloropsis oceanica|type=mRNA|length=1522bp|location=Sequence derived from alignment at scaffold_5:534653..536174- (Nannochloropsis oceanica)
AACCGCTAGTCTGTCTCCCCGATTCCAAGCCCGGAGGCAAACATATACTC
TACACGTGCAGAGAGCAGAGATATTAAAGAGGGTCTGAAACTGTGGTCGA
CTGAGAGCGAAAGAAACGTCCCAATAACGACACCGAAGGATAAAGATAGA
CAAGCGTGTATAGAATCAGAACTAGAAGGTGAAAAAAAAGGAGGAACGAT
CGACAAGCTACGAAGCAACGAACATGCTGACTACAAGGCCAATGTCGACA
ACTCCTCGCATGGGGAGGCAGCTGCAGCGTTACGAAGGCGATGTGCGGCT
TATCAGTGGGTACGTTTACTTGGGAGACTTTCGCGCTGAAAGTGATTGAG
CGTAAGCCTATTTACCACTAGGTAAACACCAGTTGGCCCGCACACTTCTA
CACTACTTGAATCTTTCACGGCAAAAACAGTATCAATGAACTTACCTCCC
ACTCTTTTTCCCCCTCCCACGATACTTCCTTCCACAGATGCATTCCCCTG
ACGCAAGATGGCAACGTCGTCTTAATCAGCTCGAGGAGTGGAAGATGGAT
TCTTCCCAAGGGAGGATGGGAAAGGGACGAGACAGCGCGGGAGGCAGCGG
CCAGGGAGACATACGAGGAGAGTGGAGTGCGTGGGTTTGTGGGCCTTGAA
CCTTTGGCTGAAATTTCATATCGAAGCAAGAGAGGTGAGGCGTGCCAACT
GTTGCTGTTCATGATGGAGGTGACAGAGATACTGACGGAGTGGCCTGAAT
CTTCGGTGCGGCAGCGGAAGCTTTTCTCCTTGAGCGACGCTATCAACGTG
TGTGGAAAGGAGGAGCACCGAGGCGCGCTACGTGAACTTTTGCAAATCTT
GCCACATTACCAGCTGCACGGTGCAGGTAGCCACCTTGACACCAACTTTG
GGCCCAGGCTGAGAGCTGATGCCGCGATGCCAACGGTGGCAACATGTACC
CGCAGCAGCAGCAGCGCGATGCAACAGGTGGCAACATGTGCCCCCAGCAG
CAGCGGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCGGTG
GGAATGTGGCGGGGCCCATGTCCATCTCCTCCAGGCGCTTGGTTGTCGAT
GACCAAAAGGAGTAGGCCGTGCAGAAACAAGAACAAGGAATAAGAAGAAG
ACATTGTTGATATATTATAAAAAGGAGGAAGGGCTTAAGGGTTTACTTAG
AATGTGCGGACAGGTTTCTGGGACATTAATGGCAGATACGGAGAAAAGAG
TCAAAGGTAGAGAACTTTTAATGTGTAGTAGACATTTTTAATCATTTAAT
TTTATTCAGGTCTGGATGGTTTTGATGAACACCAAGAAAGGAGCTCGGCT
GCGTTGTCCTCCGAGGCAGGAGGTTGGTTTTGACGGGAGTAGCAACGATG
AAGTGAAACAACCTTGAAGCGGTTGGAGGATGTGTCCTCTAGTTCAGGCT
GGTCACTGCTACTCTTAATTCTCGCTCTAGGTTTTGCTGCCCCCTCTCGC
TCTTTATTTTATTGATATGTTT
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Coding sequence (CDS) from alignment at scaffold_5:534653..536174-

>mRNA_2515 ID=mRNA_2515|Name=jgi.p|Nanoce1779_2|330773|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_5:534653..536174- (Nannochloropsis oceanica)
ATGCATTCCCCTGACGCAAGATGGCAACGTCGTCTTAATCAGCTCGAGGA
GTGGAAGATGGATTCTTCCCAAGGGAGGATGGGAAAGGGACGAGACAGCG
CGGGAGGCAGCGGCCAGGGAGACATACGAGGAGAGTGGAGTGCGTGGGTT
TGTGGGCCTTGAACCTTTGGCTGAAATTTCATATCGAAGCAAGAGAGGTG
AGGCGTGCCAACTGTTGCTGTTCATGATGGAGGTGACAGAGATACTGACG
GAGTGGCCTGAATCTTCGGTGCGGCAGCGGAAGCTTTTCTCCTTGAGCGA
CGCTATCAACGTGTGTGGAAAGGAGGAGCACCGAGGCGCGCTACGTGAAC
TTTTGCAAATCTTGCCACATTACCAGCTGCACGGTGCAGGTAGCCACCTT
GACACCAACTTTGGGCCCAGGCTGAGAGCTGATGCCGCGATGCCAACGGT
GGCAACATGTACCCGCAGCAGCAGCAGCGCGATGCAACAGGTGGCAACAT
GTGCCCCCAGCAGCAGCGGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGC
AGCAGCAGCGGTGGGAATGTGGCGGGGCCCATGTCCATCTCCTCCAGGCG
CTTGGTTGTCGATGACCAAAAGGAGTAGATGCTGACTACAAGGCCAATGT
CGACAACTCCTCGCATGGGGAGGCAGCTGCAGCGTTACGAAGGCGATGTG
CGGCTTATCAGTGGATGCATTCCCCTGACGCAAGATGGCAACGTCGTCTT
AATCAGCTCGAGGAGTGGAAGATGGATTCTTCCCAAGGGAGGATGGGAAA
GGGACGAGACAGCGCGGGAGGCAGCGGCCAGGGAGACATACGAGGAGAGT
GGAGTGCGTGGGTTTGTGGGCCTTGAACCTTTGGCTGAAATTTCATATCG
AAGCAAGAGAGGTGAGGCGTGCCAACTGTTGCTGTTCATGATGGAGGTGA
CAGAGATACTGACGGAGTGGCCTGAATCTTCGGTGCGGCAGCGGAAGCTT
TTCTCCTTGAGCGACGCTATCAACGTGTGTGGAAAGGAGGAGCACCGAGG
CGCGCTACGTGAACTTTTGCAAATCTTGCCACATTACCAGCTGCACGGTG
CAGGTAGCCACCTTGACACCAACTTTGGGCCCAGGCTGAGAGCTGATGCC
GCGATGCCAACGGTGGCAACATGTACCCGCAGCAGCAGCAGCGCGATGCA
ACAGGTGGCAACATGTGCCCCCAGCAGCAGCGGCAGCAGCAGCAGCAGTA
GCAGCAGCAGCAGCAGCAGCAGCGGTGGGAATGTGGCGGGGCCCATGTCC
ATCTCCTCCAGGCGCTTGGTTGTCGATGACCAAAAGGAGTAGATGCTGAC
TACAAGGCCAATGTCGACAACTCCTCGCATGGGGAGGCAGCTGCAGCGTT
ACGAAGGCGATGTGCGGCTTATCAGTGG
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Synonyms
Publications